BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62810.1
Length=2860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475070 jgi|Araly1|475070|fgenesh2_kg.2__200__AT1G62810.1 3591 0.0
Ahg484808 jgi|Araly1|484808|fgenesh2_kg.5__800__AT3G43670.1 1339 0.0
Ahg347467 jgi|Araly1|347467|fgenesh1_pg.C_scaffold_5000859 1319 0.0
Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918 91.6 3e-17
> Ahg475070 jgi|Araly1|475070|fgenesh2_kg.2__200__AT1G62810.1
Length=2346
Score = 3591 bits (1944), Expect = 0.0
Identities = 2222/2355 (94%), Gaps = 23/2355 (1%)
Strand=Plus/Plus
Query 3 CCTAAACCAATTGCATGGTTAGAATAAATTAGTAAAATATCTCATAGATGCGATCAAGCG 62
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1 CCTAAACCAATTGCATGGTTAGAATAAATTAGTAACATATCTCATAGATGCGATCAAACG 60
Query 63 TACAGGACTTTGAAAAGCGTTAATTATTGTTTATTTCTTATTTAACATGTTGTTTAACTG 122
|| |||||||| |||| | || ||||||||||||||| |||||||||||| | ||||
Sbjct 61 TATAGGACTTTAAAAAACCTTCATTATTGTTTATTTC---TTTAACATGTTGCTCGACTG 117
Query 123 GACTAAGTAATTATTTA-------TCTCAGC-TTTTATAAGTAACTTTCCAAAAGATAGT 174
||||||||||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct 118 GACTAAGTAATTATTTATCTGTTCTCTCAGCTTTTTATAAGTAACTTTGTGAAAGATAGT 177
Query 175 CAAAAACTCTCACTCAATCGATGGCAGAACCATCTTTTGCTCGTCTGTTTCTCTTGTTCT 234
||||| ||||||||||| |||||||||||||||||||| |||| || | |||||||||||
Sbjct 178 CAAAAGCTCTCACTCAAACGATGGCAGAACCATCTTTTTCTCGCCTCTCTCTCTTGTTCT 237
Query 235 TCAGCTTTCTCCTTATCTTTGCCACCTACTCTTGGGTCTTT-GGACCCGACTCAGGCTTC 293
||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||
Sbjct 238 TCAGCTTTCTCCTTATCTTCGCCACCTATTCTTGGGT-TTTGGGACCCGACTCAGGCTTC 296
Query 294 TTGTTCGGTACTCGTGTCCGGAAAACTCTCGGCTCGAATCGTCAAGTCCACGTTGACCAC 353
||||||||||| || ||||||||||||||||| ||||||| | ||||||| ||||| |||
Sbjct 297 TTGTTCGGTACCCGGGTCCGGAAAACTCTCGGGTCGAATCCTAAAGTCCATGTTGATCAC 356
Query 354 TCTTTAGAAAAGCCTCATCATCCACTTGATCCACTAACGGTGCGAGAAATCAATAGAG-T 412
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 357 TCTTCAGAAAAGCCTCATCATCCACTTGATCCACTAACGGTGCGAGAAATCTCGAGAGTT 416
Query 413 CAGAACAATACTCTCGAACCATGACCCGGGTTTTGGTTCCGGGTCGGCCACGATTCACTC 472
| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 C-GAACCATACTCTCGGGTCATGACCCGGGTTTTGGTTCCGGGTCGGCCACGATTCACTC 475
Query 473 CATGGCTCTCGATGAGCCGGAGAAGTCACGTGTCGTCCAGTGGAAGAAGGGAAATAAGCT 532
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 476 CATGGCTCTCGATGAGCCAGAGAAGACACGTGTCGTTCAGTGGAAGAAGGGAAATAAGCT 535
Query 533 TCTGTCACGAAGAGCTGCGGTCGTAGCTTATTGGGGTGGTCAAACACATGAGATAACGGT 592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCGTCACGAAGAGCTGCGGTCGTAGCTTATTGGGGTGGTCAAACACATGAGATAACGGT 595
Query 593 GGATCTTGATTCGGGTCGGGTAGTTTCTGATG-TGATTAACCGGACTTCAGGGTATCCGA 651
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 596 GGATCTTGATTCGGGTCGGGTCGTTTCTGATGTTG-TTAACCGGACTTCAGGGTATCCGA 654
Query 652 TTCTCACCTTGAACGACGTCTTCGCTGCTTCGCAGGTTCCTTTGAAGAGCTTGGAATTTA 711
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 655 CTCTCACCTTGAACGACGTCTTCGCGGCTTCGCAGGTTCCTTTGAAGAGCTTGGAATTCA 714
Query 712 ACCGCTCCATTGAAGCTCGTGGGGTTAAGTTTTCCGATTTAGCTTGCATCACACCGTTTG 771
||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 715 ACCGCTCGATCGAAGCGCGTGGGGTTAAGTTTTCCGATTTAGCTTGCATTACACCGTTTG 774
Query 772 CCGGATGGTTTGGATC-GGAGGAAGAAGGACGTAGAGTCATAAGAGTTCAATGTTTCACG 830
| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 775 CGGGATGGTTTGGA-CATGAGGAAGAAGGACGTAGAGTCATAAGAGTCCAATGTTACACG 833
Query 831 TTACAAGGCACTACCAATTATTTTATGAGACCACTCGAAGGACTTTATGTAACGGTCGAT 890
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 834 TTACAAGGCACTACTAATTATTTTATGAGACCACTCGAAGGTCTTTATGTAACGGTCGAC 893
Query 891 CTAGACAAATTGGAGGTTATCAAGATCATCGATAAAGGCCCAATTCCAATTCCCAAAGCC 950
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 894 CTAGACAAATTGGAAGTTATCAAGATCGTCGATAAAGGCCCAATTCCGATTCCCAAAGCC 953
Query 951 TCCGGTACAGAATACCGGTTTGGTGTTCAGAATAAACCGGTGCATATGGATCGTATTAAC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 TCCGGTACAGAATACCGGTTTGGTGTTCAGAATAAACCGGTGCATATGGATCGAATTAAC 1013
Query 1011 CCGATTTCGATGGAGCAACCTGACGGTCCCAGTTTTAGGGTCGAAGATGGGCATTTGGTT 1070
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 1014 CCGATTTCGATGGAGCAACCGGATGGTCCTAGTTTTAGGGTCGAAGATGGACATTTGGTT 1073
Query 1071 AAGTGGGCTAATTGGGTTTTCCATGTTAAAGCTGACCAACGAGCCGGTATGATCATATCT 1130
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1074 AAGTGGGCTAATTGGGTTTTCCATGTTAAAGCAGACCAACGAGCCGGTATGATCATATCT 1133
Query 1131 CAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGTGATGTACAAAGGATTC 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1134 CAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGTGATGTACAAAGGGTTC 1193
Query 1191 CCATCAGAGTTGTTTGTACCGTACATGGA-CCCTGAGGAAGGATGGTACTACAAAGGTTA 1249
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1194 CCATCAGAGTTGTTTGTACCGTACATGGATCCC-GAGGAAGGATGGTACTACAAAGGTTA 1252
Query 1250 TATGGATGCAGGCGAGCTCGGTTTAGGACCCACGGCAATGCCGCTCGTGCCTCTCAACGA 1309
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1253 TATGGATGCAGGCGAGCTCGGTTTAGGACCCACAGCCATGCCGCTCGTGCCCCTCAACGA 1312
Query 1310 TTGCCCTCGAAATTCTTACTATATAGACGGTGTTTTCGCCTCTCCAGACGGCAAACCCAT 1369
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1313 TTGCCCTCGAAATGCTTACTACATAGACGGTGTTTTCGCCTCTCCAGACGGCACACCCAT 1372
Query 1370 TGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGCGATATCAGCTGGCGACA 1429
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1373 TGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGCGACATCAGCTGGCGACA 1432
Query 1430 TTCTGAGATCCTTTTTGCCAATGCCGATATAAGAGAGTCAAGGCCAAAAGTTACATTGGT 1489
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTCTGAGATCCTTTTTACCAATGCCGATATAAGAGAGTCAAGGCCAAAAGTTACATTGGT 1492
Query 1490 AGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATATTTTCGATTGGGAGTTTCAGAC 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATATTTTCGATTGGGAGTTTCAGAC 1552
Query 1550 TGATGGTTTGATCCGTGTTACGGTCGCGGCTTCGGGAATGTTAATGGTGAAAGGGACACC 1609
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TGATGGTTTAATCCGTGTTACGGTCGCGGCTTCGGGAATGTTAATGGTGAAAGGGACACC 1612
Query 1610 TTACGATAATGTAGATGACTTAGGTGATAGGGAGGATGATGCTGGACCGTTGATCTCTGA 1669
||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1613 TTATGATAATGTAGATGACTTAGGTGATATGGAGGATGATTCTGGACCGTTGATCTCTGA 1672
Query 1670 GAATGTGATTGGAGTCGTTCATGATCATTTCATAACGTTTCATCTAGACATGGATATTGA 1729
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1673 GAATGTGATTGGAGTCGTCCATGATCATTTCATAACGTTTCATCTAGACATGGACATTGA 1732
Query 1730 TGGACCGATGAATAATTCTTTGGTT-AAGGTTCATCTAGAGAAGCAGAGAGTTCCAACAG 1788
|||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1733 TGGACCAATGAATAATTCTTT-GTTCAAGGTTCATCTAGAGAAGCAGAGAGTTCCAACAG 1791
Query 1789 GAAAATCGCCAAGGAAGAGTTACTTGAAGGTCAAGAAATATATAGCCAAGACTGAGAAAG 1848
|||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1792 GAAAATCGCCGAGGAAGAGTTACTTGAAGATCAAGAAATACATAGCCAAGACTGAGAAAG 1851
Query 1849 ATGCTCAGATCAAGTTGAGCCTCTATGACCCATATGAATTCCACATTGTGAACCCGAACC 1908
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1852 ATGCTCAGATCAAATTGAGCATTTATGACCCATATGAATTCCACATTGTGAACCCGAACC 1911
Query 1909 GAAAATCTCGGGTAGGAAACCCGGCTGGTTACAGGATCGTACCGGGTGGTAATGCAGCGA 1968
||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1912 GAAAATCTCGGATCGGAAACCTGGCTGGTTACAGGATCATACCGGGTGGTAATGCAGCGA 1971
Query 1969 GTTTGCTTGATCACGATGATCCTCCTCAAATTCGAGGTGCATTCACTAATAATCAGATAT 2028
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1972 GTTTGCTTGATCACGACGATCCTCCTCAAATTCGAGGTGCATTCACCAATAATCAGATAT 2031
Query 2029 GGGTGACTCCATATAACCGGTCAGAACAATATGCCGGAGGAGTTCTAATTTACCAGAGCC 2088
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2032 GGGTGACTCCATATAACCGGTCAGAACAATTTGCTGGAGGAGTTCTAATTTACCAGAGCC 2091
Query 2089 AAGGTGATGACACACTACAAGTTTGGTCAGACCGGGACCGTTCGATCGAAAACAAGGACA 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 AAGGTGATGACACACTACAAGTTTGGTCAGACCGGGACCGTTCGATCGAAAACAAGGACA 2151
Query 2149 TAGTACTGTGGTACACACTAGGGTTCCATCACGTACCTTGTCAAGAAGATTATCCAGTTA 2208
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2152 TAGTGCTGTGGTACACACTAGGGTTCCATCACGTACCTTGCCAAGAAGATTATCCGGTTA 2211
Query 2209 TGCCAACCGTTGCGGCTAGCTTTGAACTTAAACCAGCAAATTTCTTTGAATCCAATCCGA 2268
|||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 2212 TGCCAACCGTCGCAGCTAGCTTTGAGCTTAAACCGGCCAATTTCTTTGAATCCAATCCGA 2271
Query 2269 TTCTTGGGTCTGCTCCTTTCTTCGAAAAAGACTTACCGGTCTGTAGACCATTTGCTTCAT 2328
|||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||| |
Sbjct 2272 TTCTTGGGGCTGCTCCTTTCTTCGAAAAAGACTTACCAGTCTGTAGACCGTTGGCTTCGT 2331
Query 2329 CTTGACCGGTTCTGT 2343
||||| ||||||||
Sbjct 2332 CTTGATTGGTTCTGT 2346
> Ahg484808 jgi|Araly1|484808|fgenesh2_kg.5__800__AT3G43670.1
Length=2235
Score = 1339 bits (725), Expect = 0.0
Identities = 1592/2009 (79%), Gaps = 65/2009 (3%)
Strand=Plus/Plus
Query 357 TTAGAAAAGCCTCATCATCCACTTGATCCACTAACGGTGCGAGAAATCAATAGAGT-CAG 415
|||||||||||||| || || ||||| ||||||||| | ||||| || ||||| ||
Sbjct 164 TTAGAAAAGCCTCACCACCCGCTTGACCCACTAACGACACCTGAAATAAAGAGAGTCCA- 222
Query 416 AACAATACTCTCGAACCATGACCCGGGTTTTGGTTCCGGGTCGGCCA-CGATTCACTCCA 474
||| || |||||| ||||| |||||||| || |||||||| |||| | |||||| |||
Sbjct 223 AACCATTCTCTCGGGTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATC-ATTCACGCCA 281
Query 475 TGGCTCTCGATGAGCCGGAGAAGTC-ACGTGTCGTCCAGTGGAAGAAGGGAAATAAG-CT 532
|||||||||| |||||||||||| | ||||||||||| ||||||||| || || | ||
Sbjct 282 TGGCTCTCGACGAGCCGGAGAAG-CAACGTGTCGTCCGGTGGAAGAAAGGTGAT-CGTCT 339
Query 533 TCTGTCACGAAGAGCTGCGG-TCGTAGCTTAT-TGGGGTGGTC-AAACACATGAGATAAC 589
| | | |||||||| | || || | || || | || | | | || | | | ||
Sbjct 340 CCCGCCGCGAAGAGCAGAGGTTC-TTGC-GATGTCTAACGG-CGAGAGTCACGTGCTCAC 396
Query 590 GGTGGATCTTGATTCGGGTCGGGTAGTTTCTGATGTGATTAACCGGACTTCAGGGTATCC 649
|||||||||| ||||||||||||| ||||| ||| || | |||| |||| ||||||||
Sbjct 397 GGTGGATCTTAATTCGGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGTATCC 456
Query 650 GATTCTCACCTTGAACGACGTCTTCGCTGCT-TCGCAGGTTCCTTTGAAGAGCTTGGAAT 708
|||||| ||| |||| ||| || |||| | | || |||||||||| |||||| |||| |
Sbjct 457 GATTCTTACCATGAAAGACATCATCGCAG-TCTCACAGGTTCCTTACAAGAGCGTGGAGT 515
Query 709 TTAACCGCTCCATTGAAGCTCGTGGGGTTAAGTTTTCCGATTTAG-CTTGCATCACACCG 767
| || ||||| || || | |||||| || ||| |||| ||| | ||| || ||||||
Sbjct 516 TCAATCGCTCAATCGAGGGGCGTGGGATTCCGTTCTCCGGTTT-GATTTGTATTACACCG 574
Query 768 TTTGCCGGATGGTTTGGATCGGAGGAAGAAGGACGTA-GAGTCAT-AAGAGTTCAATGTT 825
|| ||||| |||| |||| |||| ||||||||||| | ||||||| |||| | |||||||
Sbjct 575 TTCGCCGGTTGGTATGGACCGGACGAAGAAGGACG-ACGAGTCATAAAGA-TCCAATGTT 632
Query 826 TCACGTTA-CAAGGCACTACCAATTAT-TTTATGAGACC-ACTCGAAGGACTTTATGTAA 882
|| | | |||| |||| ||||| | | |||||||| | | |||||||||||| |||
Sbjct 633 TCTC-AAAGCAAGACACTGTCAATT-TCTACATGAGACCTA-TTGAAGGACTTTATTTAA 689
Query 883 CGGTCGATCTAGACAAATTGGAGGTTATCAAGATCATCGATAAAGGCCCAATTCCAATTC 942
|||||||| | || ||| | ||| | |||||||| | || || || || |||| |||
Sbjct 690 CGGTCGATATGGATAAACTAGAGATCATCAAGATTGTAGACAATGGACCGGTTCCGGTTC 749
Query 943 CCAAAGCCT-CCGGTACAGAATACCGGTTTGG-TGTTCAGAAT-AAACCGGTGCATATGG 999
|| ||| || ||||||| ||||| | | ||| | ||| ||| ||| |||| |||||||
Sbjct 750 CC-AAGTCTACCGGTACGGAATATAGATATGGAT-TTCTTAATGAAA-CGGTACATATGG 806
Query 1000 ATCGTATTAACCCGATTTCGATGGAGCAACCTGACGGTCCCAGTTTT-AGGGTCGAAGAT 1058
| ||| | || || || |||||||||||||| |||||||| |||||| | ||| || |||
Sbjct 807 ACCGTGTCAATCCAATGTCGATGGAGCAACCGGACGGTCCAAGTTTTCA-GGTTGAGGAT 865
Query 1059 GGGCATTTGGTTAAGTGGGCTAATTGG-GTTTTCCATGTTAAAGCTGACCAACGAGCCGG 1117
|| | |||||||||||||| |||||| ||| ||| | ||| | |||||||| |||||
Sbjct 866 GGATACTTGGTTAAGTGGGCGAATTGGAAATTT-CATATCAAACCGGACCAACGTGCCGG 924
Query 1118 TATGATCATATCTCAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGTGAT 1177
||||||||| || ||||| || |||||||| ||| ||||||||||| |||||||||| ||
Sbjct 925 TATGATCATCTCACAGGCTACAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGTAAT 984
Query 1178 GTACAAAGGATTCCCATCAGAGTTGTTTGTACCGTACATGGACCCTGAGGA-AGGATGGT 1236
||||||||| || | ||||||||||| |||||||| ||||| || | ||| ||| ||||
Sbjct 985 GTACAAAGGTTTTGCGTCAGAGTTGTTCGTACCGTATATGGATCCAG-GGACAGGTTGGT 1043
Query 1237 ACTACAAAG-GTTATATGGATGCAGGCGAGCTCGGTTTAGGACCCACGGCAATGCCGCTC 1295
||| ||||| | || |||||||| || ||| | ||||||||||| | |||||||||||
Sbjct 1044 ACTCCAAAGCG-TACATGGATGCTGGAGAGTTTGGTTTAGGACCTTCTGCAATGCCGCTT 1102
Query 1296 GTGCCTCTCAACGATTGCCCTCGAAATTCTTACTATATAGACGGTGTT-TTCGCCTCTCC 1354
||||| |||||||| || |||||||| |||||||||| || ||| || ||||| |||||
Sbjct 1103 GTGCCGCTCAACGACTGTCCTCGAAACGCTTACTATATTGATGGT-TTCTTCGCTTCTCC 1161
Query 1355 AGACGGCAAACCCATTGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGCGA 1414
| |||| || || |||||||||| ||||| |||||||| |||||||| || || ||
Sbjct 1162 TCAAGGCATTCCAATCCTTCAACCTAAGATGATCTGCTTGTTCGAACGCTACGCGGGTGA 1221
Query 1415 TATCAGCTGGCGACATTCTGAGATCCTTTTTGCC-AATGCCGATATAAGAGAGTCAAGGC 1473
|| || ||||| || |||||||| | || | || | | ||||||| ||| ||||||
Sbjct 1222 CATTAGTTGGCGCCACTCTGAGATTC-TTCTCCCTGGTACAGATATAAAAGAATCAAGGG 1280
Query 1474 CAAAAGTTACATTGGTAGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATAT-TTTC 1532
|||| || || |||| ||| ||||||| ||| ||||| || || || ||||| |||
Sbjct 1281 CAAAGGTGACGCTGGTGGCTAGAATGGCTTGTTCAGTTGGGAACTATGATTATATATTT- 1339
Query 1533 GATTGGGAGTTTCAGACT-GATGGTTTGATCCGTGTTACGGTCGCGGCTTC-GGGAATGT 1590
|||||||||||||| | | ||||||||||| |||||||||||||| || || ||| ||||
Sbjct 1340 GATTGGGAGTTTCA-AATGGATGGTTTGATTCGTGTTACGGTCGCTGCCTCAGGG-ATGT 1397
Query 1591 TAATGGTGAAAGGGACACCTTACGATAATGT-AGATGACTTAGGTGATAGGGAGGATGAT 1649
| ||||||||||| || ||||| | || || | | ||||| ||||| | |||| |||
Sbjct 1398 TGATGGTGAAAGGAACGGCTTACCAAAACGTCA-AAGACTTGGGTGAGAAAGAGGCGGAT 1456
Query 1650 GCTGGACCGTTGATCTCTGAGAATGTGATTGGAGTCGTTCATGATCATTTCATAACGTTT 1709
|||||||||||||||| || || || || |||||||| || |||||||| ||| |||||
Sbjct 1457 TCTGGACCGTTGATCTCAGAAAACGTTATAGGAGTCGTCCACGATCATTTTATATCGTTT 1516
Query 1710 CATCTAGACATGGATATTGA-TGGACCGATGAATAATTCTTTGGTTAAGGTTCATCTAGA 1768
|||||||||||||| ||||| || | | || || || || |||||||||||||||||
Sbjct 1517 CATCTAGACATGGACATTGACGGGTCAG-CCAACAACTCCTTCGTTAAGGTTCATCTAGA 1575
Query 1769 GAAGCAGAGAGTTCCAACAGGAAAATCGCCAAGGAAGAGTTACTTGAAGGTCAAGAAATA 1828
|||||||||| |||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 1576 GAAGCAGAGACTTCCGCCTGGAAAATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATA 1635
Query 1829 TATAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCCTCTATGACCCATATGAATT 1888
| ||||||||||||||||||||||||||||||| |||||||| |||||||| || || ||
Sbjct 1636 TGTAGCCAAGACTGAGAAAGATGCTCAGATCAAATTGAGCCTGTATGACCCCTACGAGTT 1695
Query 1889 CCACATTGTGAACCCGAACCGAAAATCTCGGGTAGGAAACCCGGCTGGTTACAGGATCGT 1948
||| |||||||||| ||| | ||||| |||| |||||||||||||||| | | ||
Sbjct 1696 CCATTTTGTGAACCCTAACAGGCGGTCTCGTTTAGGGAACCCGGCTGGTTACAAGCTTGT 1755
Query 1949 ACCGGGTGGTAATGCAGCGAGTTTGCTTGATCACGATGATCCTCCTCAAATTCGAGGTGC 2008
|| ||||||||||| || |||||||| ||||| |||||||| ||||||||| |||| ||
Sbjct 1756 GCCTGGTGGTAATGCTGCAAGTTTGCTCGATCATGATGATCCACCTCAAATTAGAGGCGC 1815
Query 2009 ATTCACTAATAATCAGATATGGGTGACTCCATATAACCGGTCAGAACAATATGCCGGAGG 2068
||||| || ||||||||||||||||||| |||||| | ||||| |||| ||||||||
Sbjct 1816 TTTCACAAACAATCAGATATGGGTGACTCGGTATAACAGATCAGAGCAATGGGCCGGAGG 1875
Query 2069 AG-TTCTAATTTACCAGAGCCAAGGTGATGACACACTACAAGTTTGGTCAGACCGGGACC 2127
| || | || |||||||||| ||||| |||||||||||||||||||| ||| | || |
Sbjct 1876 -GCTTTTGATGTACCAGAGCCGTGGTGAAGACACACTACAAGTTTGGTCCGACAGAGATC 1934
Query 2128 GTTCGATCGAAAACAAGGACATAGTACTGTGGTACACACTAGGGTTCCATCACGTACCTT 2187
|||| || || |||||||||||||| ||||||| |||||||| ||||||||| |||| |
Sbjct 1935 GTTCCATTGAGAACAAGGACATAGTGTTGTGGTATACACTAGGATTCCATCACATACCGT 1994
Query 2188 GTCAAGAAGATTATCCAGTTATGCCAACCGTTGCGGCTAGCTTTGAACTTAAACCAG-CA 2246
| |||||||||| ||||||||||||||| | || ||||||| ||||| ||||| | ||
Sbjct 1995 GCCAAGAAGATTTTCCAGTTATGCCAACAATAGCATCTAGCTTCGAACTGAAACCGGTCA 2054
Query 2247 AATTTCTTTGAATCCAATCCGATTCTTGGG-TCTGCTCCTTTCTTCGAAAAAGACTTACC 2305
| |||||| ||||| || ||| | |||||| ||| | ||||||||||| |||||||||||
Sbjct 2055 A-TTTCTTCGAATCGAACCCGGTACTTGGGATCT-CACCTTTCTTCGAGAAAGACTTACC 2112
Query 2306 G---GTCTGTAGACCATTTGCTTCATCTT 2331
|||||| |||| | |||||||||
Sbjct 2113 ACCAGTCTGTTGACCGGATCCTTCATCTT 2141
> Ahg347467 jgi|Araly1|347467|fgenesh1_pg.C_scaffold_5000859
Length=2064
Score = 1319 bits (714), Expect = 0.0
Identities = 1578/1992 (79%), Gaps = 72/1992 (4%)
Strand=Plus/Plus
Query 357 TTAGAAAAGCCTCATCATCCACTTGATCCACTAACGGTGC-GA-GAAATCAATAGAGTCA 414
||||| |||||||| || || ||||| |||||||| || | | ||||| || ||||||
Sbjct 106 TTAGAGAAGCCTCACCACCCGCTTGACCCACTAAC-GT-CACATGAAATAAAGAGAGTCC 163
Query 415 GAACAATACTCT-CGAACCATGACCCGGGTTTTGGTTCCGGGTCGGCCA-CGATTCACTC 472
|||| || |||| || ||||| |||||||| || |||||||| |||| | |||||| |
Sbjct 164 GAACCATTCTCTCCG-GTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATC-ATTCACGC 221
Query 473 CATGGCTCTCGATGAGCCGGAGAAGTC-ACGTGTCGTCCAGTGGAAGAAGGGAAATAAG- 530
|||||||||||| |||||||||||| | ||||||||||| ||||||||| || || |
Sbjct 222 CATGGCTCTCGACGAGCCGGAGAAG-CAACGTGTCGTCCGGTGGAAGAAAGGTGAT-CGT 279
Query 531 CTTCTGTCACGAAGAGCTGCGG-TCGTAGCTTAT-TGGGGTGGTC-AAACACATGAGATA 587
|| | | | |||||||| | || || | || || | || | | | || | | |
Sbjct 280 CTCCCGCCGCGAAGAGCGGAGGTTC-TTGC-GATGTCTAACGG-CGAGAGTCACGTGCTC 336
Query 588 ACGGTGGATCTTGATTCGGGTCGGGTAGTTTCTGATGTGATTAACCGGACTTCAGGGTAT 647
|| ||||||||| | || |||||||| ||||| ||| || | |||| |||| ||||||
Sbjct 337 ACTGTGGATCTTAAATCCGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGTAT 396
Query 648 CCGATTCTCACCTTGAACGACGTCTTCGCTGCTTCGCAGGTTCCTTTGAAGAGCT-TGGA 706
|||||||| ||| |||| ||| || ||||||| ||||||||||| || ||||| | ||||
Sbjct 397 CCGATTCTTACCATGAATGACATCGTCGCTGCCTCGCAGGTTCCGTTCAAGAG-TGTGGA 455
Query 707 ATTTAACCGCTCCATTGAAGCTCGTGGGGTTAAGTTTTCCGATTTAGCT-TGCATCACAC 765
||||| || || || || || |||||| || || |||||||| | | || || ||||
Sbjct 456 GTTTAATCGTTCAATCGAGGCGCGTGGGATTCCGTCCTCCGATTT-GATATGTATAACAC 514
Query 766 CGT-TTGCCGGATGGTTTGGATCGGAGGAAGAAGGACGTAGAGTCAT-AAGAGTTCAATG 823
| | || |||||||||||| |||| || ||||| || |||||||| |||| | |||||
Sbjct 515 C-TGCAGCTGGATGGTTTGGACCGGACGAGGAAGGGCGAAGAGTCATCAAGA-TCCAATG 572
Query 824 --TTTC-ACGTTACAAGGCACTACCAATTAT-TTTATGAGA-CCACTCGAAGGACTTTAT 878
|||| | | | ||| ||| ||||| | | |||||| ||| | ||||||||||||
Sbjct 573 TTTTTCAAAG--A-AAGACACCGTCAATT-TCTACATGAGACCCA-TTGAAGGACTTTAT 627
Query 879 GTAACGGTCGATCTAGACAAATTGGAGGTTATCAAGATCATCGATAAAGGCCCAATTCCA 938
||||||||||| | |||||||| || | |||||||| | || || |||| ||||
Sbjct 628 CTAACGGTCGATATGGACAAATTAGAAATCATCAAGATTGTTGACAATGGCCTGGTTCC- 686
Query 939 ATTCCCAAAGCCT-CCGGTACAGAATACCGGTTTGG-TGTTCAGAA-TAAACCGGTGCAT 995
| |||| ||| || ||||||||||||| | ||| | || ||| ||| | || |||
Sbjct 687 AGTCCCCAAGTCTACCGGTACAGAATATAGACATGGAT-TTTTGAACGAAA-CAGTACAT 744
Query 996 ATGGATCGTATTAACCCGATTTCGATGGAGCAACCTGACGGTCCCAGTTTTAGGGTCGAA 1055
||||| || | ||||| || ||||||||||| ||||||||||| ||||| | ||| |||
Sbjct 745 ATGGACCGCGTCAACCCAATGTCGATGGAGCAGCCTGACGGTCCAAGTTTCAAGGTTGAA 804
Query 1056 GATGGGCATTTGGTTAAGTGGGCTAATTGG-GTTTTCCATGTTAAAGCTGACCAACGAGC 1114
||||| | |||||||||||||| |||||| ||| ||| ||||| | |||||||| ||
Sbjct 805 GATGGATACTTGGTTAAGTGGGCGAATTGGAAATTT-CATATTAAACCGGACCAACGTGC 863
Query 1115 CGGTATGATCATATCTCAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGT 1174
|||||||||||| || ||||| | |||||||| ||| ||||||||||| ||||||||||
Sbjct 864 CGGTATGATCATCTCACAGGCTTCAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGT 923
Query 1175 GATGTACAAAGGATTCCCATCAGAGTTGTTTGTACCGTACATGGACCCTGAGGAAGGATG 1234
|||||||||||| || | || ||||||| ||||| ||||||||||| |||||||| ||
Sbjct 924 GATGTACAAAGGTTTTGCGTCGGAGTTGTACGTACCATACATGGACCCAGAGGAAGGTTG 983
Query 1235 GTACTACAAAGGTTATATGGATGCAGGCGAGCTCGGTTTAGGACCCACGGCAATGCCGCT 1294
||||| ||||| || ||||||||| || ||| | ||||||||||| || ||||||||||
Sbjct 984 GTACTCCAAAGCTTTTATGGATGCTGGAGAGTTTGGTTTAGGACCTACTTCAATGCCGCT 1043
Query 1295 CGTGCCTCTCAACGATTGCCCTCGAAATTCTTACTATATAGACGGTGT-TTTCGCCTCTC 1353
||||| || ||||| || |||||||| ||||||| || |||||| | ||| || ||||
Sbjct 1044 TGTGCCACTTAACGACTGTCCTCGAAACGCTTACTACATTGACGGTATCTTT-GCTTCTC 1102
Query 1354 C-AGACGGCAAACCCATTGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGC 1412
| | | ||| | ||||| |||| ||||| ||||| ||||||||||||||||| || |||
Sbjct 1103 CTA-AAGGCGATCCCATCCTTCAGCCTAACATGATCTGCTTGTTTGAACGCTACGCCGGC 1161
Query 1413 GATATC-AGCTGGCGACATTCTGAGATCCTTTTTGCC-AATGCCGATATAAGAGAGTCAA 1470
|| | | |||||||| || |||||||| | || | || | | |||||||| |||||||
Sbjct 1162 GACA-CTAGCTGGCGCCACTCTGAGATTC-TTCTCCCTGGTACAGATATAAGGGAGTCAA 1219
Query 1471 GGCCAAAAGTTACATTGGTAGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATA-TT 1529
|| |||| || || |||| ||| ||||||| ||||||||| || || ||||||| |
Sbjct 1220 GGGCAAAGGTGACGCTGGTGGCTAGAATGGCTTGTTCGGTTGGGAACTATGACTATACGT 1279
Query 1530 TTCGATTGGGAGTTTCAGACT-GATGGTTTGATCCGTGTTACGGTCGCGGCTTC-GGGAA 1587
|| |||||||||||||| | | ||||||||||| || ||||||||||| || || ||| |
Sbjct 1280 TT-GATTGGGAGTTTCA-AATGGATGGTTTGATTCGCGTTACGGTCGCAGCCTCAGGG-A 1336
Query 1588 TGTTAATGGTGAAAGGGACACCTTACGA-TAATGTAGATGACTTAGGTGATAGGGAGGAT 1646
|||| |||||||||||||| |||||| | || ||| | ||||| ||||| | || | |
Sbjct 1337 TGTTGATGGTGAAAGGGACGCCTTAC-ACAAACGTACAAGACTTGGGTGAGAAAGAAGCT 1395
Query 1647 GATGCTGGACCGTTGATCTCTGAGAATGTGATTGGAGTCGTTCATGATCATTTCATAACG 1706
||| ||||||| |||||||| || || || || |||||||| ||||||||||||||||||
Sbjct 1396 GATTCTGGACCTTTGATCTCAGAAAACGTTATAGGAGTCGTCCATGATCATTTCATAACG 1455
Query 1707 TTTCATCTAGACATGGATATTGATG-GACCGATGAATAATTCTTTGGTTAAGGTTCATCT 1765
|||||||||||||| || ||||| | | ||| || || || || || |||||||||||
Sbjct 1456 TTTCATCTAGACATAGACATTGACGAGCCCGCC-AACAACTCCTTCGTCAAGGTTCATCT 1514
Query 1766 AGAGAAGCAGAGAGTTCCAACAGGAAAATCGCCAAGGAAGAGTTACTTGAAGGTCAAGAA 1825
||||||||||||| |||| | || ||| || |||||||||||||||||||||||
Sbjct 1515 AGAGAAGCAGAGACTTCCGCCTGGTGGATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAA 1574
Query 1826 ATATATAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCCTCTATGACCCATATGA 1885
|||| |||||||||||||||||||||||||||||||||||||| | || ||||| || ||
Sbjct 1575 ATATGTAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCATGTACGACCCCTACGA 1634
Query 1886 ATTCCA-CATTGTGAACCCGAAC-CGAAAATCTCGGGTAGGAAACCCGGCTGGTTACAGG 1943
||||| | |||||||||| | | || ||||| |||| |||||||||||||||| |
Sbjct 1635 GTTCCATC-TTGTGAACCCTA-CTCGTCGGTCTCGTTTAGGGAACCCGGCTGGTTACAAG 1692
Query 1944 ATCGTACCGGGTGGTAATGCAGCGAGTTTGCTTGATCACGATGATCCTCCTCAAATTCGA 2003
| || || ||||||||||| || |||||||||||||| |||||||| || |||||| ||
Sbjct 1693 CTTGTGCCTGGTGGTAATGCTGCAAGTTTGCTTGATCATGATGATCCGCCACAAATTAGA 1752
Query 2004 GGTGCATTCACTAATAATCAGATATGGGTGACTCCATATAACCGGTCAGAACAATATGCC 2063
|| || ||||| || || | |||||||||||| | |||||||||||||| |||| ||
Sbjct 1753 GGGGCTTTCACAAACAACCGGATATGGGTGACACGGTATAACCGGTCAGAGCAATGGGCT 1812
Query 2064 GGAGGAGTTCTAATTTACCAGAGCCAAGGTGATGACACACTACAAGTTTGGTCAGACCGG 2123
|| || || | || |||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 1813 GGTGGCCTTTTGATGTACCAGAGCCGTGGTGAAGACACGCTACAAGTTTGGTCGGACCGG 1872
Query 2124 GACCGTTCGATCGAAAACAAGGACATAGTACTGTGGTACACACTAGGGTTCCATCACGTA 2183
|| |||||||| || ||| |||||||||| ||||||| ||| |||||||||||||||||
Sbjct 1873 GATCGTTCGATTGAGAACGAGGACATAGTGTTGTGGTATACATTAGGGTTCCATCACGTA 1932
Query 2184 CCTTGTCAAGAAGA-TTATCCAGTTATGCCAACCGTT-GCGGCTAGCTTTGAACTTAAAC 2241
|| || |||||||| || ||| ||||||||||| | | || |||||||||||||||||||
Sbjct 1933 CCGTGCCAAGAAGACTT-TCCGGTTATGCCAAC-GATAGCAGCTAGCTTTGAACTTAAAC 1990
Query 2242 CAGCAAATTTCTTTGAATCCAATCCGATTCTTGGG-TCTGCTCCTTTCTTCGAAAAAGAC 2300
| | |||||||||||||| || |||||||||||| || | ||||||||||| ||||||
Sbjct 1991 CGGTTAATTTCTTTGAATCAAACCCGATTCTTGGGATCA-CACCTTTCTTCGAGAAAGAC 2049
Query 2301 TTACCGGTCTGT 2312
|| | ||||||
Sbjct 2050 TTGCAAGTCTGT 2061
> Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918
Length=1443
Score = 91.6 bits (49), Expect = 3e-17
Identities = 168/221 (76%), Gaps = 26/221 (12%)
Strand=Plus/Plus
Query 2506 GAGAAGTTGTTCGTGTTCGAGTTATTGTAGAGC-C-------AGCATACGGGCTGTTGCT 2557
||||||||||||||| | ||||||||||||| | | ||||| |||||||||||
Sbjct 1166 GAGAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT 1225
Query 2558 TTGTTGAGTTTGCTTCT-CTTAACGAAGCAGAGAAGGCGTTGGAAACGAAGAAGGGTGA- 2615
||||||||||||||||| || | |||||| |||||||| || || || ||| ||| |
Sbjct 1226 TTGTTGAGTTTGCTTCTGCTGAT-GAAGCAAAGAAGGCGGTGCAAGTGAGGAATGGTTAT 1284
Query 2616 AACTTTTTACAGTCGTAAGATTATTCTTGACGTG-GCTGAGATGGCTCCAGACCCTTTCC 2674
|| ||||| | | | ||| | || | || | | |||| | |||| |||||||||
Sbjct 1285 AA-TTTTT----T--T--G-TTAA-CGTGGC-TGAGAT-AGATCG-TCCATACCCTTTCC 1330
Query 2675 GACTCAAGTACAACCTTGTAAAGAAGCTTTGTTACCAAGAC 2715
||||||| ||||| |||| | |||||||||| ||| |||||
Sbjct 1331 GACTCAATTACAAGCTTGCAGAGAAGCTTTGGTACGAAGAC 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107947754330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5