BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62820.1 Length=679 Score E Sequences producing significant alignments: (Bits) Value Ahg907160 jgi|Araly1|907160|Al_scaffold_0002_241 695 0.0 > Ahg907160 jgi|Araly1|907160|Al_scaffold_0002_241 Length=450 Score = 695 bits (376), Expect = 0.0 Identities = 420/442 (95%), Gaps = 0/442 (0%) Strand=Plus/Plus Query 87 CAAGGATGGTTTGAGCAACGACCAAGTCTCATCAATGAAGGAAGCATTCATGCTATTCGA 146 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 9 CAAGGATGGTTTGAGCGACGACCAAGTCTCATCAATGAAGGAAGCATTCACGCTCTTCGA 68 Query 147 CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGGTCACTCGG 206 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 69 CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGATCACTCGG 128 Query 207 CGGCAATCCAACAGAATCACAACTCAAATCAATCATAACGACGGAGAATCTCTCGTCTCC 266 |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 129 CGGCAATCCAACAGAATCACAACTTAAATCGATCATCGCGACGGAGAATCTCTCGTCTCC 188 Query 267 GTTCGATTTCAATCGATTCCTAGATCTAATGGCGAAACATCTGAAAACAGAGCCGTTCGA 326 ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 189 GTTTGATTTCAATCGATTCATAGATCTAATGGCGAAACATCTGAAAACAGAACCGTTTGA 248 Query 327 TCGCCAGCTTCGTGATGCGTTCAAAGTGCTTGACAAGGAAGGTACTGGATTCGTTGCTGT 386 ||||||||||||||||||||||||||| || || || ||||||||||||||||||||||| Sbjct 249 TCGCCAGCTTCGTGATGCGTTCAAAGTACTCGATAAAGAAGGTACTGGATTCGTTGCTGT 308 Query 387 GGCAGATCTGAGACATATACTTACGAGTATCGGTGAGAAATTGCAGCCGAGTGAGTTTGA 446 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 309 TGCAGATCTGAGGCATATACTTACGAGTATTGGTGAGAAATTGCAGCCGAGTGAATTCGA 368 Query 447 TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGGTATGAGGATTTTAT 506 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 369 TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGTTATGAGGATTTTAT 428 Query 507 TGCTAGAATGGTTGCTAAGTAA 528 |||||||||||||||||||||| Sbjct 429 TGCTAGAATGGTTGCTAAGTAA 450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24932387718 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5