BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62820.1

Length=679
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907160 jgi|Araly1|907160|Al_scaffold_0002_241                     695    0.0  


> Ahg907160 jgi|Araly1|907160|Al_scaffold_0002_241
Length=450

 Score =  695 bits (376),  Expect = 0.0
 Identities = 420/442 (95%), Gaps = 0/442 (0%)
 Strand=Plus/Plus

Query  87   CAAGGATGGTTTGAGCAACGACCAAGTCTCATCAATGAAGGAAGCATTCATGCTATTCGA  146
            |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  9    CAAGGATGGTTTGAGCGACGACCAAGTCTCATCAATGAAGGAAGCATTCACGCTCTTCGA  68

Query  147  CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGGTCACTCGG  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  69   CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGATCACTCGG  128

Query  207  CGGCAATCCAACAGAATCACAACTCAAATCAATCATAACGACGGAGAATCTCTCGTCTCC  266
            |||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||
Sbjct  129  CGGCAATCCAACAGAATCACAACTTAAATCGATCATCGCGACGGAGAATCTCTCGTCTCC  188

Query  267  GTTCGATTTCAATCGATTCCTAGATCTAATGGCGAAACATCTGAAAACAGAGCCGTTCGA  326
            ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct  189  GTTTGATTTCAATCGATTCATAGATCTAATGGCGAAACATCTGAAAACAGAACCGTTTGA  248

Query  327  TCGCCAGCTTCGTGATGCGTTCAAAGTGCTTGACAAGGAAGGTACTGGATTCGTTGCTGT  386
            ||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct  249  TCGCCAGCTTCGTGATGCGTTCAAAGTACTCGATAAAGAAGGTACTGGATTCGTTGCTGT  308

Query  387  GGCAGATCTGAGACATATACTTACGAGTATCGGTGAGAAATTGCAGCCGAGTGAGTTTGA  446
             ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct  309  TGCAGATCTGAGGCATATACTTACGAGTATTGGTGAGAAATTGCAGCCGAGTGAATTCGA  368

Query  447  TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGGTATGAGGATTTTAT  506
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  369  TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGTTATGAGGATTTTAT  428

Query  507  TGCTAGAATGGTTGCTAAGTAA  528
            ||||||||||||||||||||||
Sbjct  429  TGCTAGAATGGTTGCTAAGTAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24932387718


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5