BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62830.1
Length=2713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924712 jgi|Araly1|924712|scaffold_200273.1 4023 0.0
> Ahg924712 jgi|Araly1|924712|scaffold_200273.1
Length=2564
Score = 4023 bits (2178), Expect = 0.0
Identities = 2451/2581 (95%), Gaps = 26/2581 (1%)
Strand=Plus/Plus
Query 11 TCACACACAGAGCTAGA-GCTATGTCAACAGAGACTAAAGAAACCCGACCCGAAACTAAA 69
||||||| ||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1 TCACACAGAGAGCAAGAGGC-ATGTCAACAGAGACTAAAGAAACCCGACCCG--A--AGA 55
Query 70 CCCGAAGACCTGGGAACTCATACTACTGTGGATGTACCCGGTGAAGAACCTCTCGGAGAG 129
|||| || ||| ||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 56 CCCG--GA------AACCCATTCTAATTTGGATTTACCCGGTGAAGAACCTCTCGGAAAG 107
Query 130 CTTATCGCCGACGACGTGAACGAAGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 189
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 108 CTTATCGCTGACGACGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 167
Query 190 TCACTCTCACCGAGCCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 249
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 227
Query 250 GACCAATCGCCATTAACGGAGCTTCAGCCTCTTCCTCTTCCTCCTCCTCTTCC-AGTCGA 308
|||||||||||||||||||||||||| |||| |||||||||||||||| ||| | ||||
Sbjct 228 GACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTCCTA-TCGA 286
Query 309 AGCACGAATCTCAGAATCGCTCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 368
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 287 AACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 346
Query 369 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGAGCAAGAAAAAGACGCCGTAGGAA 428
|||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 347 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGGGTAAGAAAACGACGCCGTAGGAA 406
Query 429 ACGTTTCTTCACTGAGATTAACGCAAACCCAGCTTTCTCAAGAAACCGCCGCACTAGCGT 488
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 407 GCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGT 466
Query 489 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 526
Query 549 GCTCACGGAGGAAGAAATTGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAAGC 608
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 527 GCTCACGGAGGAAGAAATCGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGC 586
Query 609 TAATTACATTGTTGTAAGGAATCACATTATTGCTCTGTGGCGATCTAATGTATCGAATTG 668
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 TAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTG 646
Query 669 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAACCTTAGTTGATAC 728
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 647 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATAC 706
Query 729 TGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 788
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 766
Query 789 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCAAATGTTGTTGTTGTAGGGGC 848
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 767 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGC 826
Query 849 GGGTTTAGCTGGTTTGGTTGCTGCTAGACAGTTGTTGTCAATGGGGTTTAGGGTTTTGGT 908
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 827 GGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGT 886
Query 909 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACACGGAAGATGAAAGGTGGTGA 968
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 887 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGA 946
Query 969 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGCGTTCTCACCGGAATTAATGGGAATCC 1028
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 947 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCC 1006
Query 1029 GCTTGGGGTTTTGGCGAGGCAACTTGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1088
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1007 GCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1066
Query 1089 TTTGTATCTTCCCAATGGAGAGCTTGCTGATGCTAGTGTTGATTCTAAGATTGAGGCATC 1148
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1067 TTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATC 1126
Query 1149 GTTTAATAAGTTGTTGGATAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1208
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 GTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1186
Query 1209 ATCAGTTGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1268
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 ATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1246
Query 1269 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1306
Query 1329 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCGTATGAGAT 1388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1307 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGAT 1366
Query 1389 GGGTGGTGATCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCTTTAGCGGA 1448
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1367 GGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGA 1426
Query 1449 AAATCTTCCAATTTTTTACGGGAGTACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1508
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1427 AAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1486
Query 1509 TCTGGTTTACACAGGTA-ACAAAGAGTTCCACTGCGATATGGCTCTTTGCACGGTTCCAT 1567
||| |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1487 TCTTGTTTACGCAGG-AGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGT 1545
Query 1568 TAGGTGTTCTGAAGAAAGGTTCGATTGAGTTTTATCCCGAACTTCCTCATAAGAAGAAAG 1627
|||||||||||||||||||| |||| |||||||||||||| |||||| | ||||||||||
Sbjct 1546 TAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAG 1605
Query 1628 AAGCGATTCAGAGACTTGGAT-TCGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTGT 1686
|||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||| |
Sbjct 1606 AAGCGATTCAGAGACTCGGATAT-GGATTGTTGAACAAAGTGGCAATGTTGTTTCCGTAT 1664
Query 1687 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATCCGTCCACCAGA 1746
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1665 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCTACTAGA 1724
Query 1747 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1784
Query 1807 CTTGTAGCTGGAGACGCTGCGGAAAGATTCGAGACATTGTCGCCTACTGATTCCGTTAAA 1866
||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1785 CTTGTAGCTGGTGACGCTGCAGAAAGATTTGAGTCATTGTCGCCTACTGATTCCGTTAAA 1844
Query 1867 CGGGTCTTGCAGATACTACGCGGAATATATCACCCAAAAGGAATTGTTGTTCCTGATCCG 1926
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1845 CGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCG 1904
Query 1927 GTTCAAGCCCTCTGTTCCAGATGGGGACAAGACAAGTTTTCATACGGTTCTTACTCATAT 1986
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1905 GTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATAT 1964
Query 1987 GTTGCGGTCGGATCATCAGGAGATGATTACGATATTTTAGCCGAGAGTGTTGGTGATGGA 2046
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 1965 GTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGA 2024
Query 2047 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCTACAATGCACGGAGCC 2106
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2025 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCC 2084
Query 2107 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCGTCA 2166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2085 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCA 2144
Query 2167 TCATCGGCTTTAAATCCTAACCAGATCTGCATCGACAAAGAAGAAGAGGTAGACGAAGAA 2226
|| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2145 TCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAA 2204
Query 2227 GAAGACCGCTGTTTGGATCAGTTATTCGAGACACCCGATTTAACATTCGGGAATTTCTCA 2286
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2205 GAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCG 2264
Query 2287 GTATTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGGGTTAGGATC 2346
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2265 GTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATC 2324
Query 2347 CAAATGGAGAAACCCGAATCAGGTCTTTGGCTTTACGGTTTAGTGACAAGGAAG-CAAGC 2405
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 2325 CAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAG-AAGGCAAGC 2383
Query 2406 TATTGAGCTTGGTGAAATGGATGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2465
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2384 TATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2443
Query 2466 AGGACTTGTTC-CTGTCGAAAGGAAGAGTCTT-TCTCAAGAAGGGGAATCGATGATCTCT 2523
||| |||| | | ||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 2444 AGGTTTTGTACTC-GTCGAAAGGAAGAGT-TTATCTCAAGAAGGAGAATCGATGATCTCT 2501
Query 2524 TCACTCAAAGCTGCAAGACTGAATCGACAGATCTTTGATTAGTAGTAAAATAGATTTAGA 2583
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 2502 TCACTCAAAGCTGCGAGATTGAATCGACAGATCTTTGATTAGTACTAAAATAGATTTAGA 2561
Query 2584 T 2584
|
Sbjct 2562 T 2562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102348488315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5