BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62830.1 Length=2713 Score E Sequences producing significant alignments: (Bits) Value Ahg924712 jgi|Araly1|924712|scaffold_200273.1 4023 0.0 > Ahg924712 jgi|Araly1|924712|scaffold_200273.1 Length=2564 Score = 4023 bits (2178), Expect = 0.0 Identities = 2451/2581 (95%), Gaps = 26/2581 (1%) Strand=Plus/Plus Query 11 TCACACACAGAGCTAGA-GCTATGTCAACAGAGACTAAAGAAACCCGACCCGAAACTAAA 69 ||||||| ||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 1 TCACACAGAGAGCAAGAGGC-ATGTCAACAGAGACTAAAGAAACCCGACCCG--A--AGA 55 Query 70 CCCGAAGACCTGGGAACTCATACTACTGTGGATGTACCCGGTGAAGAACCTCTCGGAGAG 129 |||| || ||| ||| ||| | ||||| ||||||||||||||||||||||| || Sbjct 56 CCCG--GA------AACCCATTCTAATTTGGATTTACCCGGTGAAGAACCTCTCGGAAAG 107 Query 130 CTTATCGCCGACGACGTGAACGAAGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 189 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 108 CTTATCGCTGACGACGTGAACGACGTCGTTTCTGATGCGTCGGCGACGGAGACAGACTTC 167 Query 190 TCACTCTCACCGAGCCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 249 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 TCACTCTCCCCGAGTCAATCGGAGCAAAATATTGAAGAAGACGGCCAAAACTCACTCGAT 227 Query 250 GACCAATCGCCATTAACGGAGCTTCAGCCTCTTCCTCTTCCTCCTCCTCTTCC-AGTCGA 308 |||||||||||||||||||||||||| |||| |||||||||||||||| ||| | |||| Sbjct 228 GACCAATCGCCATTAACGGAGCTTCAACCTCAGCCTCTTCCTCCTCCTCCTCCTA-TCGA 286 Query 309 AGCACGAATCTCAGAATCGCTCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 368 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 287 AACACGAATCTCAGAATCGCCCGGTGAAGAAGAATCTTCCGATCTGGTAACGGAGCAACA 346 Query 369 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGAGCAAGAAAAAGACGCCGTAGGAA 428 |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 347 ATCACAAAACCCTAATGCGGCGGAGCCTGGTCCTAGGGTAAGAAAACGACGCCGTAGGAA 406 Query 429 ACGTTTCTTCACTGAGATTAACGCAAACCCAGCTTTCTCAAGAAACCGCCGCACTAGCGT 488 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 407 GCGTTTCTTCACTGAGATTAACGCGAACCCAGCTTTCTCCAGAAACCGCCGCACTAGCGT 466 Query 489 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 CGGCAAAGAGGTGGATTCAGAAGCGCTAATCGCAATGTCGGTAGGGTTTCCGGTTTATTC 526 Query 549 GCTCACGGAGGAAGAAATTGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAAGC 608 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 527 GCTCACGGAGGAAGAAATCGAAGCTAATGTGGTTTCGATCATCGGAGGTAAAGATCAGGC 586 Query 609 TAATTACATTGTTGTAAGGAATCACATTATTGCTCTGTGGCGATCTAATGTATCGAATTG 668 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 587 TAATTACATTGTCGTGAGGAATCACATTATCGCTCTGTGGCGATCTAATGTATCGAATTG 646 Query 669 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAACCTTAGTTGATAC 728 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 647 GTTAACGCGAGATCATGCGCTTGAGTCTATACGTGCTGAACACAAAAACTTAGTGGATAC 706 Query 729 TGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 788 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 AGCTTACAATTTCCTTCTTGAGCATGGTTATATTAACTTCGGGCTTGCTCCGGTTATTAA 766 Query 789 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCAAATGTTGTTGTTGTAGGGGC 848 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 767 AGAGGCGAAATTGAGGTCGTTTGATGGCGTAGAGCCGCCTAATGTTGTGGTTGTTGGGGC 826 Query 849 GGGTTTAGCTGGTTTGGTTGCTGCTAGACAGTTGTTGTCAATGGGGTTTAGGGTTTTGGT 908 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 827 GGGTTTAGCTGGTTTGGTGGCTGCTAGACAATTGTTGTCAATGGGGTTTAGGGTTTTGGT 886 Query 909 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACACGGAAGATGAAAGGTGGTGA 968 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 887 TCTTGAAGGTAGAGATAGACCGGGTGGGCGGGTTAAGACTCGTAAGATGAAAGGTGGTGA 946 Query 969 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGCGTTCTCACCGGAATTAATGGGAATCC 1028 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 947 TGGTGTTGAGGCAATGGCTGATGTTGGTGGAAGTGTTCTCACCGGTATTAATGGGAATCC 1006 Query 1029 GCTTGGGGTTTTGGCGAGGCAACTTGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1088 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1007 GCTTGGGGTTTTGGCGAGGCAACTAGGTTTGCCTCTTCATAAGGTTAGAGATATTTGTCC 1066 Query 1089 TTTGTATCTTCCCAATGGAGAGCTTGCTGATGCTAGTGTTGATTCTAAGATTGAGGCATC 1148 |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1067 TTTGTATCTTCCCAGTGGAGAGCTTGTTGATGCTGGTGTTGATTCTAAGATTGAGGCATC 1126 Query 1149 GTTTAATAAGTTGTTGGATAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1208 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1127 GTTTAATAAGTTGTTGGACAGAGTTTGTAAGCTTAGACAGTCGATGATAGAGGAGAATAA 1186 Query 1209 ATCAGTTGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1268 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1187 ATCAGTAGATGTGCCTTTGGGAGAAGCGCTTGAAACATTTCGATTGGTTTATGGGGTTGC 1246 Query 1269 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1247 TGAGGATCAGCAAGAGAGAATGCTCTTAGATTGGCATTTAGCAAACTTGGAATATGCAAA 1306 Query 1329 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCGTATGAGAT 1388 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1307 TGCTACATTGTTGGGGAATCTGTCAATGGCGTATTGGGATCAAGATGATCCATATGAGAT 1366 Query 1389 GGGTGGTGATCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCTTTAGCGGA 1448 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1367 GGGCGGTGACCATTGTTTTATCCCAGGTGGGAACGAAATATTTGTACATGCGTTAGCGGA 1426 Query 1449 AAATCTTCCAATTTTTTACGGGAGTACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1508 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1427 AAATCTTCCGATTTTTTACGGGAATACAGTTGAGAGCATCAGATATGGAAGCAACGGGGT 1486 Query 1509 TCTGGTTTACACAGGTA-ACAAAGAGTTCCACTGCGATATGGCTCTTTGCACGGTTCCAT 1567 ||| |||||| |||| | ||||||| |||||||||||||||||||||||||||||||| | Sbjct 1487 TCTTGTTTACGCAGG-AGACAAAGAATTCCACTGCGATATGGCTCTTTGCACGGTTCCGT 1545 Query 1568 TAGGTGTTCTGAAGAAAGGTTCGATTGAGTTTTATCCCGAACTTCCTCATAAGAAGAAAG 1627 |||||||||||||||||||| |||| |||||||||||||| |||||| | |||||||||| Sbjct 1546 TAGGTGTTCTGAAGAAAGGTGCGATCGAGTTTTATCCCGAGCTTCCTGAGAAGAAGAAAG 1605 Query 1628 AAGCGATTCAGAGACTTGGAT-TCGGATTGTTGAACAAAGTGGCGATGTTGTTTCCGTGT 1686 |||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||| | Sbjct 1606 AAGCGATTCAGAGACTCGGATAT-GGATTGTTGAACAAAGTGGCAATGTTGTTTCCGTAT 1664 Query 1687 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATCCGTCCACCAGA 1746 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 1665 AACTTCTGGGGCGAAGAGATTGATACTTTTGGGCGATTAACCGAAGATTCGTCTACTAGA 1724 Query 1747 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1725 GGAGAATTCTTCTTGTTCTACAGCTATTCTTCTGTTTCCGGTGGTCCATTACTTGTAGCA 1784 Query 1807 CTTGTAGCTGGAGACGCTGCGGAAAGATTCGAGACATTGTCGCCTACTGATTCCGTTAAA 1866 ||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| Sbjct 1785 CTTGTAGCTGGTGACGCTGCAGAAAGATTTGAGTCATTGTCGCCTACTGATTCCGTTAAA 1844 Query 1867 CGGGTCTTGCAGATACTACGCGGAATATATCACCCAAAAGGAATTGTTGTTCCTGATCCG 1926 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1845 CGGGTCTTGCAGATACTACGCGGAATATATCACCCGAAAGGAATTGTTGTTCCTGATCCG 1904 Query 1927 GTTCAAGCCCTCTGTTCCAGATGGGGACAAGACAAGTTTTCATACGGTTCTTACTCATAT 1986 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1905 GTTCAAGCACTCTGTTCCAGATGGGGCCAAGACAAGTTTTCATACGGTTCTTACTCATAT 1964 Query 1987 GTTGCGGTCGGATCATCAGGAGATGATTACGATATTTTAGCCGAGAGTGTTGGTGATGGA 2046 |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 1965 GTTGCGGTCGGATCATCAGGAGATGATTACGACATTTTAGCTGAGAGTGTCGGTGACGGA 2024 Query 2047 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCTACAATGCACGGAGCC 2106 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2025 AGAGTGTTCTTTGCAGGTGAAGCTACTAACAGACAATATCCAGCAACAATGCACGGAGCC 2084 Query 2107 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCGTCA 2166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2085 TTCTTAAGTGGAATGAGAGAAGCAGCAAACATACTTAGAGTTGCTAGAAGAAGAGCATCA 2144 Query 2167 TCATCGGCTTTAAATCCTAACCAGATCTGCATCGACAAAGAAGAAGAGGTAGACGAAGAA 2226 || ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 2145 TCTTCGGCTTCAAATCCTAACCAGACCTGCATCGACAAAGAAGAAGAGGTCGACGAAGAA 2204 Query 2227 GAAGACCGCTGTTTGGATCAGTTATTCGAGACACCCGATTTAACATTCGGGAATTTCTCA 2286 |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 2205 GAAGACAGCTGTTTGGATCAGTTATTCGAGACACCCGATCTGTCATTCGGGAATTTCTCG 2264 Query 2287 GTATTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGGGTTAGGATC 2346 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2265 GTTTTGTTTACTCCAAATTCGGATGAACCTGAATCCATGTCATTGTTGAGAGTTAGGATC 2324 Query 2347 CAAATGGAGAAACCCGAATCAGGTCTTTGGCTTTACGGTTTAGTGACAAGGAAG-CAAGC 2405 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||| Sbjct 2325 CAAATGGAGAAACCTGAATCGGGTCTTTGGCTTTACGGTTTAGTGACAAG-AAGGCAAGC 2383 Query 2406 TATTGAGCTTGGTGAAATGGATGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2465 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2384 TATTGAGCTTGGGGAAATGGAGGGAGATGAGTTGAGAAATGAATACTTGCGTGAGAAGTT 2443 Query 2466 AGGACTTGTTC-CTGTCGAAAGGAAGAGTCTT-TCTCAAGAAGGGGAATCGATGATCTCT 2523 ||| |||| | | ||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct 2444 AGGTTTTGTACTC-GTCGAAAGGAAGAGT-TTATCTCAAGAAGGAGAATCGATGATCTCT 2501 Query 2524 TCACTCAAAGCTGCAAGACTGAATCGACAGATCTTTGATTAGTAGTAAAATAGATTTAGA 2583 |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 2502 TCACTCAAAGCTGCGAGATTGAATCGACAGATCTTTGATTAGTACTAAAATAGATTTAGA 2561 Query 2584 T 2584 | Sbjct 2562 T 2562 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102348488315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5