BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62850.2
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475068 jgi|Araly1|475068|fgenesh2_kg.2__198__AT1G62850.3 1142 0.0
> Ahg475068 jgi|Araly1|475068|fgenesh2_kg.2__198__AT1G62850.3
Length=1304
Score = 1142 bits (618), Expect = 0.0
Identities = 700/741 (94%), Gaps = 0/741 (0%)
Strand=Plus/Plus
Query 51 CAAAATGGCGGCAATCAGAACGATGACGAACATGATTCTACGCGAGTTCATCCATCATCC 110
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 21 CAAAATGGCGGCAATCAGAACGATGACGAACATGATTCTACGCGAGTTTATCCATCATCC 80
Query 111 ACTTCTCCTTCACTCTTCATCGAAATCGTGTCAATCTCTTTTACCATGTCTCCGTCTCAC 170
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 81 ACTTCTCCTTCACTCTTCATCGAAATCGTGTCAATCTCTTTTGCCATGTCTCCGTCTCAC 140
Query 171 TCCCCTAATTTCTCCAATTCACTCTAATTCCCGGCTCGTATCCGTCCGATGTGCGGCATC 230
|||||||||| |||||||||||||||||||||| | | |||| ||||||||| ||| ||
Sbjct 141 TCCCCTAATTGCTCCAATTCACTCTAATTCCCGATTTGGATCCATCCGATGTGTGGCGTC 200
Query 231 GACCTCCGGTGGAAGCGGTGGTGATCGGAAAGTCTCTTCACGGTTGTCGCAGGTGCAACA 290
||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 201 TACCTCCGGTGGAAGCAATGGTGATCGTAAAGTCTCTTCACGGTTGTCGCAGGTTCAACA 260
Query 291 GATGCTTCATGAAGCCGAAGAGAGAGCTAGTTCCGCTGGCAATGAGCCTACTCCTCAAAT 350
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 261 GATGCTTCATGAAGCTGAAGAGAGAGCTAATTCCGCTGGCAATGAACCTACTCCTCAAAT 320
Query 351 CACTCTAGACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGT 410
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CACTCTTGACCATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGT 380
Query 411 GAACAAATTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAG 470
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 381 GAACAAATTGAATACCAAAGTAGATATGCGCTTCAATGTGAAGAACGCCTACTGGCTAAG 440
Query 471 TGACAGGATCAGAGAGAAAATCTTACTGACGGAGAAGAATCGGATCAACAAGGATGGTGA 530
|||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 441 TGACAGGATCAGAGAGAAAATCATACTGAAGGAGAAGAATCGGATCAACAAGGACGGTGA 500
Query 531 ACTTGTGATATCTTCTACCAAAACCAGAACGCAGAAAGGTAACATCGACGATGCACTTGA 590
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 501 ACTTGTGATATCTTCAACCAAAACCAGAACGCAGAAAGGCAACATTGACGATGCACTTGA 560
Query 591 AAAACTACAGGCGATAATTGATGCGGCTTCATATGTTCCACCTCCACCATCAGAAGAACA 650
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 561 AAAACTACAGGCGATAATTAATGCGGCTTCGTATGTTCCACCTCCACCATCAGAAGAACA 620
Query 651 AAAGAAGAAAATAGTAAAGCTCGCTGCGAAAGCTGACAATAAACGACTTAAAAGCAAAAA 710
||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 621 GAAGAAGAAAATTGTAAAGATGGCTGAGAAAGCTGACAATAAACGACTTAAAAGCAAAAA 680
Query 711 AGTTCTGTCAGACAAGAAATCTGCGAGAAGAAGCCGCGGTAGTTACGATGATTAAACTTA 770
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 681 AGTTCTTTCAGACAAGAAATCTTCGAGAAGAAGCCGTGGTAGTTACGATGATTAAACTTA 740
Query 771 AAACCATACAATGGAGTCCAG 791
||||||||||||| |||||||
Sbjct 741 AAACCATACAATGCAGTCCAG 761
Score = 883 bits (478), Expect = 0.0
Identities = 524/547 (96%), Gaps = 0/547 (0%)
Strand=Plus/Plus
Query 1051 CCAGAGCTTCTTGCTGCGGCAACATGAGCGATTTCTAGACCACCAGAAACTGGAAGAGTC 1110
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 758 CCAGAGCTTCTTGCTGCAGCAACATGAGCGATTTCTAGACCACCGGAAACTGGAAGAGTC 817
Query 1111 ACTGTTCTCACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACACGAAGTGCTT 1170
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 818 ACTGTTCTTACAACATTCCGGTCACTAAATGCTTTTGTCCAACTGAAACATGAAGTGCTT 877
Query 1171 CTTCGGTAACCGCTTCTGCAGACCACAACAGCTCCTCTGCTACCAAACACAGCGTTTCTC 1230
|||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||
Sbjct 878 CTTCGGTAACCGCTTCTGCATACCACAACCGCACCTCTGCTTCCAAACACAGCGTTTCTC 937
Query 1231 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AAAACGTTTGCTGCGAAATCCTTCTGATCCCAGTCAACTACCAAGAAATCGATTCCTTGT 997
Query 1291 AGCGTCTGCATCGTGTGCTCCAATTCCTCTCCTTCCTCGTTCATAATAATCGTCTCCGGC 1350
|||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 998 AGCGTCAGCATCGTGTGCTCCAATTCTTCTTCTTCCTCATTCATAATAATCGTCTCCGGC 1057
Query 1351 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AAGTTTGAGCAAGATTGTTCTGCCATGGCTTGAAGATAAGCAGTTTGTGATCTTGCGTTT 1117
Query 1411 GGTACTATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGTTTAAGCCAACGCTT 1470
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 1118 GGTACAATACAAATGTGTCTTCCGTTTGTGTGTCGACTCGCTATGGTTAAGCCTATGCTT 1177
Query 1471 ATGGCTATAGTTTCTCCTTCTGACCATGTTTCCACAATCAAATTGGCGTTCCATCCTGCT 1530
|||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1178 ATGGCTATGGTTTCTCCTTCTGACCATGTTTCCACGATTAAATTCGCGTTCCATCCTGCC 1237
Query 1531 GCCATCGCCGCCACTAGCTCCGCCGCTCCCGGCGTTCCAAGATTTTCACACTGCAAAAGT 1590
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1238 GCCATCGCCGCCACTAGCTCTGCCGCTCCCGGCGTTCCAAGATTTTCATACTGCAAAAGT 1297
Query 1591 TGCCCAA 1597
|||||||
Sbjct 1298 TGCCCAA 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5