BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62860.1
Length=2342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475066 jgi|Araly1|475066|fgenesh2_kg.2__196__AT1G62860.1 1101 0.0
Ahg924709 jgi|Araly1|924709|scaffold_200270.1 344 2e-93
> Ahg475066 jgi|Araly1|475066|fgenesh2_kg.2__196__AT1G62860.1
Length=1170
Score = 1101 bits (596), Expect = 0.0
Identities = 770/854 (90%), Gaps = 11/854 (1%)
Strand=Plus/Plus
Query 541 ATGGTTGAAACGGGATGTCCTGCA-AATGTCGTAACGTTTACCACACTGATGAACGGTCT 599
|||||||||| ||||||| | || ||||||| | || | |||||||||||| |||||
Sbjct 1 ATGGTTGAAAAGGGATGT-CAACACGATGTCGTGGCCTTCAACACACTGATGAATGGTCT 59
Query 600 TTGCCGCGAGGGTCGAGTTCTCCAAGC-GCTAGCTCTTGTTGATCGGATGGTAGAAGAA- 657
|||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||
Sbjct 60 TTGCCGCGAGGGTCGAGTTCTCGAAGCAG-TAGCTCTTGTTGATCGGATGGTTGAA-AAT 117
Query 658 GGTCATCAACCTGACGCGGTTACTTACGGAACAATTGTCAATGGAATGTGTAAGTTGGGT 717
|||||||||||| ||| ||| || || ||||||||||||||||||||||||||| |||||
Sbjct 118 GGTCATCAACCTAACGAGGTGACGTATGGAACAATTGTCAATGGAATGTGTAAGATGGGT 177
Query 718 GACACTGTCTCGGCTTTGAATATGCTTAGGAAGATGGATGAAAGCCAAATCAAAGCCAAT 777
||||||| ||| || ||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 178 GACACTGACTCTGCCTTGAACCTGCTTAGGAAGATGGATGAAAGCCACATCAAAGCCGAT 237
Query 778 GTTGTAATCTATTCTGCCATCGTTGATCGCCTTTGCAAGGACGGGAACCACATCAAGGCT 837
|||||||||||| |||||||| |||||||||||||||| |||||| |||||| |||||||
Sbjct 238 GTTGTAATCTATACTGCCATCATTGATCGCCTTTGCAAAGACGGGCACCACAGCAAGGCT 297
Query 838 CAAAATATTTTCACTGAAATGCATGAGAAAGGTATTTTTCCCAATGTTCTCACTTACAAT 897
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 298 CAAAATCTTTTCACTGAAATGCATGACAAAGGAATTTTTCCCAATGTTCTCACCTACAAC 357
Query 898 TGTATGATAGACGGTTATTGTAGCTATGGTAAATGGAGTGATGCGGAGCAATTGCTGCGT 957
|||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||| |||
Sbjct 358 TGTATGATAGACGGTTGTTGTAGTTATGGTAAATGGACTGATGCGGAGCAACTGCTACGT 417
Query 958 GATATGATCGAAAGGAATATCGACCCTGATGTTGTTACTTTCAGCGCATTGATCAATGCA 1017
||||||||||| || ||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 418 GATATGATCGAGAGCAATGTCGACCCTGATGTTGTAACTTTCAATGCATTGATCAATGCA 477
Query 1018 TTTGTCAAAGAAGGAAAGGTCTCTGGGGCTGAAGAATTATACCGTGAGATGCTTCGAAGG 1077
|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 478 TTTGTCAAAGAAGGAAAGGTCTTTGAGGCTGAAGAATTATACCGTGAGATGCTTGGAAGG 537
Query 1078 AATATATTTCCT-ACCACAATCACGTATAGTTCAATGATCGATGGATTTTGCAAGCATAG 1136
|||||||||||| | |||||||| |||| |||| |||||||||||||||||||||||||
Sbjct 538 AATATATTTCCTGA-TACAATCACATATAATTCATTGATCGATGGATTTTGCAAGCATAG 596
Query 1137 CCGTCTAGAAGACGCAAAGCACATGTTTGATTTGATGGTTAGCAAGGGCTGCTCTCCGGA 1196
|||||||| || || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 TCGTCTAGATGATGCGAAGCACATGTTTGATTTGATGGTTAGCAAGGGCTGCTCTCCGAA 656
Query 1197 TATAATTACT-TTAAATACTCTCATAGATGGATGCTGTAGGGCGAAGAGGGTAGATGATG 1255
| |||| ||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 657 TGTAATCACTATTAA-TACTCTCATAGGTGGATGCTGTAGGGCTAAGAGGGTAGATGATG 715
Query 1256 GAATGAAGCTTCTCCATGAGATGTCGAGAAGAGGATTAGTTCCTGATACCGTTTCTTACA 1315
|||| || |||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 716 GAATTAAACTTCTCCATGAGATGTTAAGAAGAGGATTAGTTCCTGATTCAGTTTCTTACA 775
Query 1316 GCA-TCTTATTCACGGGTTCTGTCAAGTGGGGAATGTTAATGTTGCTCAAGACCTTTTCC 1374
|| ||||||||||||||||||||||| |||| || |||||| |||||||||||||||||
Sbjct 776 ACACTCTTATTCACGGGTTCTGTCAAGCGGGGGATCTTAATGCTGCTCAAGACCTTTTCC 835
Query 1375 AGGAGATGATTTCT 1388
||||||||||||||
Sbjct 836 AGGAGATGATTTCT 849
Score = 224 bits (121), Expect = 2e-57
Identities = 139/147 (95%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 1495 GTAAGATGGATCTTGATACTGCTACTTGT-A-A-CATCATCATCAATGGAATGTGCAAGG 1551
||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 853 GTAAGATGGATCTTGATACTGCTACTTATAACATCATCATCATCAATGGAATGTGCAAGG 912
Query 1552 GTAATAAGGTGGACGAAGCATGGGATTTGTTCAATAGTCTCCCCGTCAATGGTGTGGAAA 1611
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 GTAATAAGGTGGACGAAGCATGGGATTTGTTCAATAGTCTCCCCCTCAATGGTGTGGAAA 972
Query 1612 CTGATGTCGTAACTTACAATATATTGA 1638
||||| || |||||||||||||||||
Sbjct 973 CTGATATCCAAACTTACAATATATTGA 999
Score = 165 bits (89), Expect = 1e-39
Identities = 107/115 (93%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 2149 TTGTACTTTCGAGTTTTGGAGATGAATGTATATATATACAGAGCTTTGGCTGGAGAGCTT 2208
||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 996 TTG-ACTTTTGAGTTTTGGAGATGAATTTATATATATAC--AGCTTTGGCTGCAGAGCTT 1052
Query 2209 CTAGTGTAGCATCCGGAGAAGTTTGCAACTGAATGTCTAAGTCAAATTTAAGATA 2263
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1053 CTAGTGTAGCATCTGGAGAAGTTTGCAACTGAATGTCTAAGTCAAATTGAAGATA 1107
> Ahg924709 jgi|Araly1|924709|scaffold_200270.1
Length=280
Score = 344 bits (186), Expect = 2e-93
Identities = 232/253 (92%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 1 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTAATGCTGCTGCTGTTTCTGCG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 21 ATGTTGGCTAGGGTTTGCAGATCTGAATCATCTTCTGGTGATGCTGCTGCTGTTTATGCG 80
Query 61 AGATTGTTCAGTACGAGATTAGTTCATCGCCGCGTCGCCAAGAAAA-CTAGTAAGGTTGA 119
||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 81 AGATTGTTCAGTAGGAGATTGGTTCATCGCCGCGTCGCCAAGAAAAGC-AGTAAGGTTGA 139
Query 120 AAAGAGTATGCCTTCTCTGAG-GA-G---CTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 174
|||||||||||||||| |||| || | |||||||||||||||||||||||||||||||
Sbjct 140 AAAGAGTATGCCTTCTTTGAGCGAAGGAGCTTTTGAAGGAGAGAGTTTGAAATTGAGAAG 199
Query 175 TGGATCTCATTATATCAGAAGCTTAGATGATGCGATCGATTTGTTCGATGATATGGTTAG 234
||| | ||||||||||| |||||| ||||||||||| | |||||||||||| |||||| |
Sbjct 200 TGGGTTTCATTATATCAAAAGCTTTGATGATGCGATTGTTTTGTTCGATGAAATGGTTTG 259
Query 235 ATCTCGTCC-CTT 246
||||||||| |||
Sbjct 260 ATCTCGTCCACTT 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88217007420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5