BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62870.1
Length=2749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475065 jgi|Araly1|475065|fgenesh2_kg.2__195__AT1G62870.1 3794 0.0
Ahg920074 jgi|Araly1|920074|scaffold_101355.1 965 0.0
Ahg348692 jgi|Araly1|348692|fgenesh1_pg.C_scaffold_5002084 217 4e-55
> Ahg475065 jgi|Araly1|475065|fgenesh2_kg.2__195__AT1G62870.1
Length=2661
Score = 3794 bits (2054), Expect = 0.0
Identities = 2473/2662 (93%), Gaps = 81/2662 (3%)
Strand=Plus/Plus
Query 111 ATTTCTATTTCTGTTCTCTGTTATGAGGAACCGCCGGAGTTATCTCCGACCGCCGGCGAA 170
|||||| |||||| ||||||| ||||| || |||||||||||||||||||| |||||| |
Sbjct 58 ATTTCTTTTTCTGATCTCTGTCATGAGAAATCGCCGGAGTTATCTCCGACCACCGGCGGA 117
Query 171 ATTTTCTCTTCAATTTCATCAAAATCCACTAGTCTCAGCTTAATTTCGTTCAGGGTTGTT 230
|||||||||||||||||| | | || ||||||||||||| ||||||||||| ||
Sbjct 118 ATTTTCTCTTCAATTTCA-C----T--AC---TCTCAGCTTAATTCCGTTCAGGGTT-TT 166
Query 231 G-TTTAAGTTTTTTGACTTTacaatggcgacgacgacaaacgcaacaacaacggcgacac 289
| |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 167 GTTTTAAG-TTTTCGACTTTACAATGGCGACGACGACAAACG---CAACAACGGCGACAC 222
Query 290 aacagcaaacgcaaacgcaatcaccaacg---caa----ca--acCGTCGGCGGAAGAAT 340
|||||||||||||||||||||||||| || ||| || |||||||||||||||||
Sbjct 223 AACAGCAAACGCAAACGCAATCACCATCGCAACAACCGCCATTACCGTCGGCGGAAGAAT 282
Query 341 TAGCGACAAAGGCGTTACAAAAGCGTTACGAAGGATTAATGATGGTAAGAACAAAAGCAG 400
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TAGCAACAAAGGCGTTACAAAAGCGTTACGAAGGATTAATGATGGTAAGAACAAAAGCAG 342
Query 401 TTAAAGGCAAAGGCGCGTGGTATTGGAGTCACCTTGAACCAATCTTACTACACAACACCG 460
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 343 TAAAAGGCAAAGGCGCGTGGTATTGGAGTCATCTTGAACCAATCTTACTTCACAACACCG 402
Query 461 ACACTGGTTTCCCTAAAGCCGTTAAACTCCGATGTTCTTTATGCGACGCCGTTTTCTCAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 ACACTGGTTTCCCTAAAGCCGTTAAACTCCGATGTTCTTTATGCGACGCCGTTTTCTCAG 462
Query 521 CTTCTAATCCTTCCCGAACTGCTTCTGAGCATCTTAAACGTGGAACTTGTCCAAATTTCA 580
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CTTCGAATCCTTCACGAACTGCTTCTGAGCATCTTAAACGTGGAACTTGTCCAAATTTCA 522
Query 581 ACTCTTTACCTAAACCCATCTCCACAAtctctcct--t----ctcctcctcc-tc-c--t 630
||||||||||||||||||||||||||||||||||| | | ||||| || | |
Sbjct 523 ACTCTTTACCTAAACCCATCTCCACAATCTCTCCTCCTCCACCACCTCCGCCGCCGCAAA 582
Query 631 c--cgtcttcttctcACCGGAAACGTAATTCCTCCGCCGTGGAAGCTCTGAatcatcatc 688
| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 583 CGACGTCTTCTTCTCACCGGAAACGTAATTCCTCCGCTGTGGAAGCTCTG-A--ATCATC 639
Query 689 atcatcatcctcatcatcatcatcaAGGGTCTTATAATGTGACGCCTCTTAGTGTCGTTG 748
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 640 --C-TCATCCTCATCATCATCATCAAGGGTCTTATAATGTGACGCCTCTCAGTGTTGTTG 696
Query 749 ATCCCTCGAGATTCTGTGGGCAGTTTCCGGTTACACAGCAGCCGCATTTGATGCTTTCCG 808
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 697 ATCCGTCGAGATTCTGTGGGCAGTTTCCGGTTACGCAGCAGCCGCATTTGATGCTTTCCG 756
Query 809 GTGGAAAAGACGATTTGGGTCCATTAGCTATGCTTGAAGATAGTGTGAAGAAGCTCAAGA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 757 GTGGAAAAGACGATTTGGGTCCATTAGCTATGCTTGAAGATAGTGTGAAGAAGCTTAAGA 816
Query 869 GTCCTAAAACTTCTCAGACGCGGAATCTAACTAAAGCTCAGATAGATTCTGCGTTAGATT 928
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 817 GTCCTAAAACTTCGCAGACGCAGAATCTAAGTAAAGCTCAGATAGATTCTGCGTTAGATT 876
Query 929 CTCTCTCTGATTGGGTTTTTGAATCTTGTGGCTCTGTTTCTTTATCTGGTCTCGAGCATC 988
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 877 CTCTCTCTGATTGGGTTTTTGAATCTTGTGGCTCTGTTTCTTTATCTGGTCTTGAGCATC 936
Query 989 CAAAGTTGAGAGCTTTTTTGACGCAAGTTGGTTTACCGATCATCTCAAGGAGAGATTTTG 1048
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 937 CAAAGTTGAGAGCTTTTTTGACGCAAGTTGGGTTACCGATTATCTCAAGGAGAGATTTTG 996
Query 1049 TCACCGGAAGATTGGATTTGAAGTATGAAGATTCGAGAGCAGAGGCTGAATCGAGAATCC 1108
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 997 TTACCGGAAGATTGGATTTGAAGTATGAGGATTCGAGAGCAGAGGCTGAATCGAGAATCC 1056
Query 1109 ACGACGCAATGTTCTTTCAGATTGCTTCTGATGGATGGAAATTCGACAGCTCCGGCGAGA 1168
| ||||||||||||||||| || ||||||||||||||||||||||| | |||||||||||
Sbjct 1057 ATGACGCAATGTTCTTTCAAATCGCTTCTGATGGATGGAAATTCGAAAACTCCGGCGAGA 1116
Query 1169 ATTTGGTGAATTTGATTGTGAATTTGCCTAATGGGACGAGTTTGTATAGACGAGCTGTGT 1228
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1117 ATTTGGTGAATTTGATTGTGAATTTACCTAATGGGACGAGTTTGTATAGACGAGCTGTGT 1176
Query 1229 TTGTGAACGGAGCTGTGCCGTCTAATTACGCAGAGGAGGTTTTGTGGGAGACGGTGAGGG 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TTGTGAACGGAGCTGTGCCGTCTAATTACGCAGAGGAGGTTTTGTGGGAGACGGTGAGGG 1236
Query 1289 GTATTTGTGGTAATTCACCTCAGAGGTGTGTTGGGATTGTTTCAGATAGGTTTATGAGTA 1348
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1237 GTATTTGTGGTAATTCACCTCAGCGATGTGTTGGAATTGTTTCAGATAGGTTTATGAGTA 1296
Query 1349 AGGCATTGAGGAATCTTGAGAGCCAGCATCAATGGATGGTGAATCTCTCTTGTCAGTTTC 1408
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AAGCATTGAGGAATCTTGAAAGCCAGCATCAATGGATGGTGAATCTCTCTTGTCAGTTTC 1356
Query 1409 AAGGTTTCAACAGTTTGATTCGAGATTTTGTAAAAGAGCTTCCTTTGTTTAAATCCGTCT 1468
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1357 AAGGTTTCAATAGTTTGATTCAAGATTTTGTGAAAGAGCTTCCTTTGTTTAAATCCGTCT 1416
Query 1469 CTCAAAGCTGCTCGAGGCTCGTTAATTTCGTGAACAGCACGGCACAGATCCGAAACGCGG 1528
||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||
Sbjct 1417 CTCAAAGCTGCTCGAGGCTCGTTAATTTCGTCAACAGCACGCCGCAGTTCCGAAACGCGG 1476
Query 1529 TTTGTAAGTATCAGTTGCAAGAGCAAGGAGAGACTAGGATGCTGCATTTGCCTTTGGATA 1588
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1477 TTTGTAAGTATCAGTTGCAAGAGCAAGGAGAGACTAGAATGCTGCATTTGCCTTTGGATA 1536
Query 1589 GTTCTTTGTTTGAGCCATTGTATAATCTCCTTGAGGATGTGCTTAGTTTCGCTAGAGCGA 1648
|||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1537 GTTCCTTGTTTGAGCCATTGTATAATCTTCTTGAGGATGTACTTAGTTCCGCTAGAGCGA 1596
Query 1649 TTCAGCTGGTGATGCATGATGATG-TGTGTAAGGCTGTTCTAATGGAGGATCATATGGCT 1707
||||||| |||||||||||||||| | ||||||||||| || ||||||||||||||||||
Sbjct 1597 TTCAGCTTGTGATGCATGATGATGCT-TGTAAGGCTGTGCTTATGGAGGATCATATGGCT 1655
Query 1708 AGAGAGGTTGGTGAAATGGTTGGAGATGTCGGGTTTTGGAACGAGGTAGAGGCGGTTTAT 1767
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1656 AGAGAGGTTGGTGAAATGGTTGGGGATGTCGGGTTTTGGAACGAGGTAGAGGCGGTTTAT 1715
Query 1768 TTGTTGTTGAAGCTTGTTAAAGAAATGGCTCGGAGAATAGAGGAAGAGAGGCCTTTGGTA 1827
| |||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1716 TCGTTGTTGAAGCTCGTTAGAGAAATGGCTCGGCGAATAGAAGAAGAGAGGCCTTTGGTA 1775
Query 1828 GGGCAATGTTTACCGCTATGGGATGAGCTAAGGTCCAAGATAAAAGATTGGTATGCAAAG 1887
||||||||||| ||||| ||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1776 GGGCAATGTTTGCCGCTTTGGGACGAGCTGAGATCGAAGATAAAAGATTGGTATGCAAAG 1835
Query 1888 TTCAATGTTGTTGAAGAGAGGCAAGTAGAGAAGATCGTTGAGAGAAGATTCAAGAAGAGT 1947
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1836 TTTAATGTAGTTGAAGAGAGGCAAGTTGAGAAGATCGTTGAGAGAAGATTCAAGAAGAGT 1895
Query 1948 TATCACCCAGCTTGGGCTGCGGCGTTTATACTTGATCCGCTTTACTTGATAAAAGACAGT 2007
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1896 TATCACCCGGCTTGGGCTGCAGCGTTTATACTTGATCCTCTTTACTTGATAAGAGACAGC 1955
Query 2008 AGCGGAAAATATCTTCCTCCATTCAAATGCTTGTCCCCGGAGCAAGAGAAAGATGTTGAT 2067
|||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||
Sbjct 1956 AGCGGAAAATATCTTCCTCCATTCAAGTGCTTGTCGCCAGAACAAGAGAAAGATGTTGAT 2015
Query 2068 AAGTTAATAACAAGGCTTGTGTCTAGAGACGAGGCACATATCGCGATGATGGAGCTGATG 2127
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2016 AAGTTGATAACAAGGCTAGTGTCTAGAGACGAGGCACATATCGCGATGATGGAACTGATG 2075
Query 2128 AAATGGAGAACAGAAGGGCTTGATCCGGTTTACGCAAGGGCGGTTCAAATGAAGGAGAGA 2187
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2076 AAATGGAGAACTGAAGGGCTTGATCCGGTTTATGCAAGGGCGGTTCAAATGAAGGAGAGA 2135
Query 2188 GATCCTGTTTCGGGGAAAATGAGGATAGCTAATCCACAAAGTAGTAGACTTGTTTGGGAA 2247
|| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2136 GACCCTATTTCAGGGAAAATGAGGATAGCTAATCCACAAAGCAGTAGACTTGTTTGGGAA 2195
Query 2248 ACTTATCTTAGTGAGTTCAGGTCATTGGGGAGAGTTGCAGTTAGGCTTATTTTTCTCCAT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 ACTTATCTTAGTGAGTTCAGGTCATTGGGGAGAGTTGCAGTTAGGCTTATTTTTCTCCAT 2255
Query 2308 GCAACTTCTTGTGGTTTCAAATGCAATTCCTCTGTTTTGAGATGGGTAAATTCGAATGGA 2367
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GCAACTTCTTGTGGGTTCAAATGCAATTCCTCTGTTTTGAGATGGGTAAATTCGAATGGA 2315
Query 2368 AGATCACGCGCAGCCGTGGATCGAGCTCAAAAGTTGATCTTTATATCCGCTAACTCGAAA 2427
|||||||| |||||||||||||||||||||||| |||||||||||||||| || || |||
Sbjct 2316 AGATCACGTGCAGCCGTGGATCGAGCTCAAAAGCTGATCTTTATATCCGCCAATTCAAAA 2375
Query 2428 TTCGAAAGGAGAGACTTCTCCAACGAGGAAGAGAGAGATGCGGAGCTGCTCGCTATGGCG 2487
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 2376 TTCGAAAGGAGAGACTTCTCAAACGAGGAAGAGAGAGACGCAGAGCTGCTCGCTATGGCT 2435
Query 2488 AATGGCGAAGATGATGTGCTAAACGATGTTCTCATCGATACATCCTCAGTGTGACTTGTT 2547
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2436 AATGGCGAAGATGATGTGCTAAACGATGTTCTCATCGATACATCCTCGGTGTGAC----- 2490
Query 2548 AATTTTTACCAAATTTAGTTTTTCACTAGAACTTGGCCATTTTGTAGGATTGCTTGAATT 2607
||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2491 --------CCA--TTTAGTTTT-CACTAGAAGTTGGCCATTTTGTAGGATTGCTTGAATT 2539
Query 2608 CAttttttttgttgttaacttttttttttACTACCCTTAATTCAATTTGTACTTGGCTCC 2667
|||||||||| | || || || |||||| |||||||||||||||||
Sbjct 2540 CATTTTTTTT------A-CT---------AC--CC-TTAATTTAATTTGTACTTGGCTCC 2580
Query 2668 TTTAGGAGGTGAGAAAGAGAGCCATATCATTGTATTTCTTTTAGTCTATTTTGATCATAA 2727
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2581 TTTAGGAGGTGAGAA-GAGAGCCATATCATTGTATTTCTTTTAGTCTATTTCGATCATAA 2639
Query 2728 TTTTAGGCAATTTTTCCGTGTC 2749
|||||||| |||||||||||||
Sbjct 2640 TTTTAGGCGATTTTTCCGTGTC 2661
> Ahg920074 jgi|Araly1|920074|scaffold_101355.1
Length=2419
Score = 965 bits (522), Expect = 0.0
Identities = 820/962 (85%), Gaps = 27/962 (3%)
Strand=Plus/Plus
Query 1593 TTTGTTTGAGCCATTGTATAATCTCCTTGAGGATGTGCTT-AGTTTCGCTAGAGCGATTC 1651
||| |||||||| |||| |||||| |||||||||||| || |||| ||||||||| || |
Sbjct 1454 TTTCTTTGAGCCGTTGTTTAATCTTCTTGAGGATGTG-TTGAGTTCCGCTAGAGCAATCC 1512
Query 1652 AGCTGGTGATGCATGATGATG-TGTGTAAGGCTGTTCTAATGGAGGATCATATGGCTAGA 1710
|| |||| ||||||||||||| | ||||||| |||| ||||||||||||||||||||||
Sbjct 1513 AGTTGGTAATGCATGATGATGCT-TGTAAGGTTGTTTTAATGGAGGATCATATGGCTAGG 1571
Query 1711 GAGGTTGGTGAAATGGTTGGAGATGTCGGGTTTTGGAACGAGGTAGAGGCGGTTTA-TTT 1769
|||||| | || |||||||| |||| ||||||||||||||||||||||||||| | |
Sbjct 1572 GAGGTTAGAGAGATGGTTGGGGATGAAGGGTTTTGGAACGAGGTAGAGGCGGTTCACGCT 1631
Query 1770 GTTGTTGAAGCTTGTTAAAGAAATGGCTCGGAGAATAGAGGAAGAGAGGCCT--TTGGTA 1827
||| | |||||||||||||| ||||||||||||||||||||||||| | || || ||
Sbjct 1632 -TTGATCAAGCTTGTTAAAGAGATGGCTCGGAGAATAGAGGAAGAGAAG-CTGCTT-GTT 1688
Query 1828 GGGCAATGTTTACCGCTATGGGATGAGCTAAG-GTCCAAGATAAAAGATTGGTATGCAAA 1886
|||||||| |||||||||||||||||||||| | | ||||| ||||||||| || | ||
Sbjct 1689 GGGCAATGCCTACCGCTATGGGATGAGCTAAGAG-CTAAGATTAAAGATTGGGATTCTAA 1747
Query 1887 GTTCAATGTTGTTGAAGAGAGG-CAAGTAGAGAAGA-TCGTTGAGAGAAGATTCAAGAAG 1944
||| ||||| | | ||| ||| || || ||||| | |||||||||||||||||||||||
Sbjct 1748 GTTTAATGTAG--G-AGA-AGGACATGTGGAGAA-ACTCGTTGAGAGAAGATTCAAGAAG 1802
Query 1945 AGTTATCACCCAGCTTGGGCTGCGGCGTTT-ATACTTGATCCGCTTTACTTGATAAAAGA 2003
|||||||| || |||||||||||||| ||| ||||| || || ||||||||||||| |||
Sbjct 1803 AGTTATCATCCGGCTTGGGCTGCGGC-TTTCATACTCGACCCTCTTTACTTGATAAGAGA 1861
Query 2004 CAGTAGCGGAAAATATCTTCCTCCATTCAAATGCTTGTC-CCCGGAGCAAGAGAAAGATG 2062
||||||||||| ||||||||||| |||||||| ||||| ||| ||||||||||||||||
Sbjct 1862 TAGTAGCGGAAAGTATCTTCCTCCGTTCAAATGTTTGTCGCCC-GAGCAAGAGAAAGATG 1920
Query 2063 TTGATAAGTTAATAACAAGGCTTGTGTCTAGAGACGAGGCACATATCGCGATGATGGAGC 2122
| |||||||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 1921 TAGATAAGTTGATAACAAGGCTTGTGTCTAGAGACGAGGCACACATTGCTTTGATGGAAC 1980
Query 2123 TGATGAAATGGAGAACAGAAGGGCTTGATCCGGTTTACGCAAGGGCGGTTCAAATGAAGG 2182
| |||||||||||||| |||||||||||||| | || ||||||||||| |||||||| |
Sbjct 1981 TAATGAAATGGAGAACCGAAGGGCTTGATCCTATGTATGCAAGGGCGGTCCAAATGAAAG 2040
Query 2183 AGAGAGATCCTG-TTTCGGGGAAA-ATGAGGATAGCTAATCCACAAAGTAGTAGACTTGT 2240
|| | || || | |||| || ||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 2041 AGCGTGACCC-GATTTCCGG-AAAGATGAGGATAGCGAATCCTCAAAGCAGTAGACTTGT 2098
Query 2241 TTGGGAAACTTATCTTAGTGAGTTCAGGTCATTGGGGAGAGTTGCAGTTAGGCTTATTTT 2300
|||||| || |||||||| || |||||||| | |||| |||||| || ||||| |||||
Sbjct 2099 TTGGGAGACGTATCTTAGCGAATTCAGGTCGCTAGGGAAAGTTGCGGTAAGGCTCATTTT 2158
Query 2301 TCTCCATGCAACTTCTTGTGGTTTCAAATGCAATTCCTCTGTTTTGAGATGGGTAAATTC 2360
||||| || ||| || | || |||||||||||||||||| |||||| ||||||||| ||
Sbjct 2159 CCTCCACGCGACTACTGGAGGGTTCAAATGCAATTCCTCTCTTTTGAAATGGGTAAACTC 2218
Query 2361 GAATGGAAGATCACGCGCAGCCGTGGATCGAGCTCAAAAGTTGATCTTTATATCCGCTAA 2420
||| || | |||| |||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 2219 GAACGGGCGGTCACATGCAGCCGTAGATCGAGCTCAAAAGCTGATCTTCATATCCGCTAA 2278
Query 2421 CTCGAAATTCGAAAGGAGAGACTTCTCCAACGAGGAAGAGAGAGATGCGGAGCTGCTCGC 2480
|||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||
Sbjct 2279 CTCGAAGTTCGAAAGGAGAGATTTCTCAAACGAGGAGGATAGGGATGCGGAGCTGCTCGC 2338
Query 2481 TATGGCGAATGGCGAAGATGATGTGCTAAACGATGTTCTCATCGATACATCCTCAGTGTG 2540
|||||| || || || ||| || |||| ||||||||||| ||||||||||||| |||||
Sbjct 2339 TATGGCTAACGGTGATGATCATCTGCTTAACGATGTTCTTGTCGATACATCCTCGGTGTG 2398
Query 2541 AC 2542
||
Sbjct 2399 AC 2400
> Ahg348692 jgi|Araly1|348692|fgenesh1_pg.C_scaffold_5002084
Length=816
Score = 217 bits (117), Expect = 4e-55
Identities = 130/136 (96%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1690 ATGGAGGATCATATGGCTAGAGAGGTTGGTGAAATGGTTGGAGATGTCGGGTTTTGGAAC 1749
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGGATCATATGGCTAGAGAGGTTGGTGAAATGGTTGGGGATGTCGGGTTTTGGAAC 60
Query 1750 GAGGTAGAGGCGGTTTATT-TGTTGTTGAAGCTTGTTAAAGAAATGGCTCGGAGAATAGA 1808
||||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||
Sbjct 61 GAGGTAGAGGCGGTTTATTCTCT-GTTGAAGCTCGTTAAAGAAATGGCTCGAAGAATAGA 119
Query 1809 GGAAGAGAGGCCTTTG 1824
||||||||||||||||
Sbjct 120 GGAAGAGAGGCCTTTG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103719737135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5