BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62880.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1          822    0.0  


> Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1
Length=702

 Score =  822 bits (445),  Expect = 0.0
 Identities = 499/526 (95%), Gaps = 0/526 (0%)
 Strand=Plus/Plus

Query  192  GAGGGATGGGAGAGGTCTGGACATGGATTATTTCATTCTTAATCCTTATCACTCTTCTCG  251
            |||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | |
Sbjct  106  GAGGGATGGGAGAGGTTTGGACATGGATTATTTCGTTTTTAATCCTTATCACTCTTGTTG  165

Query  252  GACTCATCGTCTATCAGCTTATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT  311
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  166  GACTCATCGTCTATCAGCTCATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT  225

Query  312  ACGACTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT  371
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  226  ACGATTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT  285

Query  372  TATGCGTATTTTACCTCGTAACGGGTCATTGGTTCATGGCACTCCTTTGCGTTCCTTATC  431
            |||||||||| |||||| | |||||||||||||||||| |||||||||| ||||||||||
Sbjct  286  TATGCGTATTCTACCTCTTTACGGGTCATTGGTTCATGTCACTCCTTTGTGTTCCTTATC  345

Query  432  TCTACTACAATTTCCATCTGTACTCTCGAAAACAACATTTGATAGACGTGACAGAGATCT  491
            ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||
Sbjct  346  TCTACTACAATTTCCATCTTTACTCGAGAAAACAACATTTGATAGACGTCACAGAGATCT  405

Query  492  TCAACTTGCTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA  551
            | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  TTAACTTACTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA  465

Query  552  CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACACTTGATGATTACGAGGACTGAA  611
            ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  466  CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACGCTGGATGATTACGAGGACTGAA  525

Query  612  TCACGCTTGAAGATACACCCCTGTGACAGGCGACAACAAACGGTTTGGTCAAACCCCTCT  671
             |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct  526  CCACGCTTGAAGATACATCCCTGTGACAGGCGACAACAAACGGTTTGATCAAACCTCTCT  585

Query  672  CTTAGTACTTGACACCGCGCTTGATACAATGGCATGAGAAGGAAGG  717
            |||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct  586  CTTACTACCTGACACTGCGCTTGATACAATGGCATGAGAAGGAAGG  631


 Score =  110 bits (59),  Expect = 2e-23
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand=Plus/Plus

Query  743  TGTGGCATTAGAGAGCTGTGTAAACCAGATTTTATAGTCATTAGAATTTCATTGTGGATC  802
            ||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  632  TGTGGCATTAGAGATTTGTGTAAGCCAGA-TTTATAGTCATTAGAATTTCATTGTGGATC  690

Query  803  TTTGTGGTGAAG  814
            ||||||||||||
Sbjct  691  TTTGTGGTGAAG  702



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5