BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62880.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1 822 0.0
> Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1
Length=702
Score = 822 bits (445), Expect = 0.0
Identities = 499/526 (95%), Gaps = 0/526 (0%)
Strand=Plus/Plus
Query 192 GAGGGATGGGAGAGGTCTGGACATGGATTATTTCATTCTTAATCCTTATCACTCTTCTCG 251
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | |
Sbjct 106 GAGGGATGGGAGAGGTTTGGACATGGATTATTTCGTTTTTAATCCTTATCACTCTTGTTG 165
Query 252 GACTCATCGTCTATCAGCTTATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 311
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GACTCATCGTCTATCAGCTCATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 225
Query 312 ACGACTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 371
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ACGATTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 285
Query 372 TATGCGTATTTTACCTCGTAACGGGTCATTGGTTCATGGCACTCCTTTGCGTTCCTTATC 431
|||||||||| |||||| | |||||||||||||||||| |||||||||| ||||||||||
Sbjct 286 TATGCGTATTCTACCTCTTTACGGGTCATTGGTTCATGTCACTCCTTTGTGTTCCTTATC 345
Query 432 TCTACTACAATTTCCATCTGTACTCTCGAAAACAACATTTGATAGACGTGACAGAGATCT 491
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 346 TCTACTACAATTTCCATCTTTACTCGAGAAAACAACATTTGATAGACGTCACAGAGATCT 405
Query 492 TCAACTTGCTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 551
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTAACTTACTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 465
Query 552 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACACTTGATGATTACGAGGACTGAA 611
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 466 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACGCTGGATGATTACGAGGACTGAA 525
Query 612 TCACGCTTGAAGATACACCCCTGTGACAGGCGACAACAAACGGTTTGGTCAAACCCCTCT 671
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 526 CCACGCTTGAAGATACATCCCTGTGACAGGCGACAACAAACGGTTTGATCAAACCTCTCT 585
Query 672 CTTAGTACTTGACACCGCGCTTGATACAATGGCATGAGAAGGAAGG 717
|||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 586 CTTACTACCTGACACTGCGCTTGATACAATGGCATGAGAAGGAAGG 631
Score = 110 bits (59), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 743 TGTGGCATTAGAGAGCTGTGTAAACCAGATTTTATAGTCATTAGAATTTCATTGTGGATC 802
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 632 TGTGGCATTAGAGATTTGTGTAAGCCAGA-TTTATAGTCATTAGAATTTCATTGTGGATC 690
Query 803 TTTGTGGTGAAG 814
||||||||||||
Sbjct 691 TTTGTGGTGAAG 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5