BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62880.1 Length=861 Score E Sequences producing significant alignments: (Bits) Value Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1 822 0.0 > Ahg475064 jgi|Araly1|475064|fgenesh2_kg.2__194__AT1G62880.1 Length=702 Score = 822 bits (445), Expect = 0.0 Identities = 499/526 (95%), Gaps = 0/526 (0%) Strand=Plus/Plus Query 192 GAGGGATGGGAGAGGTCTGGACATGGATTATTTCATTCTTAATCCTTATCACTCTTCTCG 251 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||| | | Sbjct 106 GAGGGATGGGAGAGGTTTGGACATGGATTATTTCGTTTTTAATCCTTATCACTCTTGTTG 165 Query 252 GACTCATCGTCTATCAGCTTATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 311 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 166 GACTCATCGTCTATCAGCTCATTAGTTTGGCTGATCTCGAGTTTGATTATATCAACCCTT 225 Query 312 ACGACTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 371 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 ACGATTCTGCATCAAGAATAAACTTTGTGGTATTACCAGAATCCATTCTTCAAGGATTTT 285 Query 372 TATGCGTATTTTACCTCGTAACGGGTCATTGGTTCATGGCACTCCTTTGCGTTCCTTATC 431 |||||||||| |||||| | |||||||||||||||||| |||||||||| |||||||||| Sbjct 286 TATGCGTATTCTACCTCTTTACGGGTCATTGGTTCATGTCACTCCTTTGTGTTCCTTATC 345 Query 432 TCTACTACAATTTCCATCTGTACTCTCGAAAACAACATTTGATAGACGTGACAGAGATCT 491 ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| Sbjct 346 TCTACTACAATTTCCATCTTTACTCGAGAAAACAACATTTGATAGACGTCACAGAGATCT 405 Query 492 TCAACTTGCTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 551 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TTAACTTACTTGATTGGGAAAAGAAGAAACGACTCTTCAAGCTCGCTTACATTATCCTCA 465 Query 552 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACACTTGATGATTACGAGGACTGAA 611 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 466 CTCTCTTTCTCACCATTTTCTGGTTAATCTATTCAACGCTGGATGATTACGAGGACTGAA 525 Query 612 TCACGCTTGAAGATACACCCCTGTGACAGGCGACAACAAACGGTTTGGTCAAACCCCTCT 671 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| Sbjct 526 CCACGCTTGAAGATACATCCCTGTGACAGGCGACAACAAACGGTTTGATCAAACCTCTCT 585 Query 672 CTTAGTACTTGACACCGCGCTTGATACAATGGCATGAGAAGGAAGG 717 |||| ||| |||||| |||||||||||||||||||||||||||||| Sbjct 586 CTTACTACCTGACACTGCGCTTGATACAATGGCATGAGAAGGAAGG 631 Score = 110 bits (59), Expect = 2e-23 Identities = 68/72 (94%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 743 TGTGGCATTAGAGAGCTGTGTAAACCAGATTTTATAGTCATTAGAATTTCATTGTGGATC 802 |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 632 TGTGGCATTAGAGATTTGTGTAAGCCAGA-TTTATAGTCATTAGAATTTCATTGTGGATC 690 Query 803 TTTGTGGTGAAG 814 |||||||||||| Sbjct 691 TTTGTGGTGAAG 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31870758612 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5