BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62886.1

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315116 jgi|Araly1|315116|fgenesh1_pm.C_scaffold_2000149           333    3e-91


> Ahg315116 jgi|Araly1|315116|fgenesh1_pm.C_scaffold_2000149
Length=219

 Score =  333 bits (180),  Expect = 3e-91
 Identities = 208/221 (94%), Gaps = 4/221 (2%)
 Strand=Plus/Plus

Query  1    ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGTGATGTTCCCATGGCACAGTTCATT  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGTTAACTCAATCAAAGGAGTCTTCATCTCATGCGATGTTCCCATGGCACAGTTCATT  60

Query  61   GCACATTTGAACAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCAAGTACTGAAACTG  120
            ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  61   GCACATTTGAATAATTCGTTGCCTGCTTCACAGAAGTTCATAATTCGAGTACTGAAACTG  120

Query  121  GACACTACTAGTATGTTTGTGAAGCCATATGCTGAGGAGATGATCCGT-GATGCCGTCAT  179
            ||||||||| |||| |||||||||||| |||||||||||||||||||| | |||| ||||
Sbjct  121  GACACTACTTGTATATTTGTGAAGCCACATGCTGAGGAGATGATCCGTAG-TGCCTTCAT  179

Query  180  CAAGTTCAGGGA-CGAAAACTCTTACGCAAAGGCGAATTGA  219
            ||| |||||||| | ||||||||||||||||||| ||||||
Sbjct  180  CAATTTCAGGGATC-AAAACTCTTACGCAAAGGCCAATTGA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7484899156


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5