BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62920.1

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947975 jgi|Araly1|947975|scaffold_704204.1                        145    6e-34
  Ahg906971 jgi|Araly1|906971|Al_scaffold_0002_52                      119    4e-26


> Ahg947975 jgi|Araly1|947975|scaffold_704204.1
Length=466

 Score =  145 bits (78),  Expect = 6e-34
 Identities = 177/221 (80%), Gaps = 22/221 (10%)
 Strand=Plus/Plus

Query  133  AGACCAACTGGCCCAATTCCCTCGTTGATGCTTGACCTTGAAGTCTACACAGGAGCTATA  192
            |||||  |||| |||||| | || |  ||||||| |||||||||||||||||||||||||
Sbjct  255  AGACCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGCTATA  314

Query  193  GATGATTTTGATTTTGAGGATTACTTGAATGTATCTACTCCGCAGA-TCCTCGAGAATCC  251
            |||||||||| |||||||||||||||||||| |||  | |||  || |||  ||||  | 
Sbjct  315  GATGATTTTGGTTTTGAGGATTACTTGAATG-ATC--C-CCGT-GAATCC--GAGA--C-  364

Query  252  AAGATGCTCAAACCAGTTGACTTCCACCACCACGTCATGGAAGTTGGGGTTAGTCTCTCC  311
            |     ||||||||||| ||||| ||||||   |  ||||||||| || || ||||||||
Sbjct  365  A-----CTCAAACCAGTAGACTTTCACCACG--GA-ATGGAAGTTCGGCTTGGTCTCTCC  416

Query  312  AAAGGCCCAGCTTAACC-AAGTTCCTTGTAGG-TCAAAACA  350
            |||||||||| ||  || ||||| | |||||| ||||||||
Sbjct  417  AAAGGCCCAG-TTCCCCCAAGTTTCATGTAGGGTCAAAACA  456


> Ahg906971 jgi|Araly1|906971|Al_scaffold_0002_52
Length=1263

 Score =  119 bits (64),  Expect = 4e-26
 Identities = 76/82 (93%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  252   AAGATGCTCAAACCAGTTGACTTCCACCACCACGTCATGGAAGTTGGGGTTAGTCTCTCC  311
             |||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||
Sbjct  1020  AAGATGCTCAAACCAGTTGACTTCCACCACCACGACATGGAAGTTCGGCTTGGTCTCTCC  1079

Query  312   AAAGGCCCAGCTTAACCAAGTT  333
             ||| |||||||||| |||||||
Sbjct  1080  AAACGCCCAGCTTACCCAAGTT  1101


 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 49/54 (91%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  418   GCTGGGGAAATGATCCTTGCAGCGCCGTCATCAAGTTCAGGGACCAAAACTCTT  471
             |||| ||| |||||   |||||||||||||||||||||||||||||||||||||
Sbjct  1112  GCTGCGGAGATGAT--ATGCAGCGCCGTCATCAAGTTCAGGGACCAAAACTCTT  1163



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28897171086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5