BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G62935.1

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924701 jgi|Araly1|924701|scaffold_200262.1                        817    0.0  


> Ahg924701 jgi|Araly1|924701|scaffold_200262.1
Length=588

 Score =  817 bits (442),  Expect = 0.0
 Identities = 509/540 (94%), Gaps = 9/540 (2%)
 Strand=Plus/Plus

Query  1    ATGTTGAACATTATAATCAATGTCATGGAGATCATCTGGAGAACAATTGTTTCAACACTA  60
            ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  27   ATGATGAACATTATAATCAATGTCATGGAGATGATCTGGAGAACAATTGTTTCAACATTA  86

Query  61   ATGCtctttttcttcttgagatatttc---aa-----c-aatcctcttcttcttttcttt  111
            |||||||||||||||||||||||||||   ||     | |||||||||||| ||||||||
Sbjct  87   ATGCTCTTTTTCTTCTTGAGATATTTCAATAATCCTCCAAATCCTCTTCTTATTTTCTTT  146

Query  112  ttcctctgtacgattcttttcttACTTATCATCGATCGTAATCGCTCTGTTTATGAAGAA  171
            |||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  147  TTCCTCTGTTTGATTCTTTTCTTGCTTATCATCGATCGTAATCGCTCTGTTTATGAAGAA  206

Query  172  ACCGGAGATTTCTATGTTTTGTACACTTTTCAAGAAGACAATATGCTTGATGGTGAAATC  231
            |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct  207  ACCGAAGATTTCTATGTTTTGTACACTTTTCAAGAAGACAGTATGCTTGATGTTGAAACC  266

Query  232  ATAGACAAGAACAGAGAATGTTGTGATTTCACAAGATATTACTATGATGATTGTTTTAGC  291
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  267  ATAGACAAGAACAGAGAATGCTGTTATTTCACAAGATATTACTATGATGATTGTTTTAGC  326

Query  292  TATTATGATGGTTTTGATGAAGTTGATAATGATGGTTGTATATGGAACGATGATGAAGAT  351
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  327  TATTATGATGGTTTTGATGAAGTTGATAATGATGGTTTTATATGGAACGATGATGAAGAT  386

Query  352  TTTAGCCAATGTAATCAAgatggtggtgatgatggtattgaaaaccgtgatgatgatgat  411
            | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  387  TATAGCCAATGGAATCAAGATGGTGGTGATGATGGTATTGAAAACCATGATGATGATGAT  446

Query  412  aatcatgcctatggtgatgatgttgatgatgaCACATTGACGAGCAGGATTGAAGATTAC  471
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  447  AATCATGCCTATGGTGATGACGTTGATGATGACACCTTGACGAGCAGGATTGAAGATTAC  506

Query  472  ATTGCAAACGTTTACAATGGATGGAGAGAAGAGAGACGAACCGACAAATTGTTTGTCTGA  531
            ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct  507  ATTGCAAACGTTTACAATGGATGGAGAGAAGAGAGACGAACAGAGAAACTGTTTGTCTGA  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19344883623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5