BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62940.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924700 jgi|Araly1|924700|scaffold_200261.1 1681 0.0
> Ahg924700 jgi|Araly1|924700|scaffold_200261.1
Length=1631
Score = 1681 bits (910), Expect = 0.0
Identities = 954/976 (98%), Gaps = 0/976 (0%)
Strand=Plus/Plus
Query 673 GTCTGAAATGATCGGTCAGATCGTGACGCTTGGTTTGATCCCATTCTTTCATATTTACGG 732
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 633 GTCTGAAATGATCGGTCAGATCGTGACGCTTGGTTTGATCCCATTCTTTCACATTTACGG 692
Query 733 TATCGTTGGCATATGTTGTGCTACAATGAAGAATAAAGGCAAAGTTGTTGCTATGAGTCG 792
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TATCGTTGGCATATGTTGCGCTACAATGAAGAATAAAGGCAAAGTTGTTGCTATGAGTCG 752
Query 793 GTACGATCTAAGGATTTTCTTGAATGCTTTGATTGCTCATGAGGTTTCGTTTGCGCCTAT 852
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 753 GTACGATCTAAGGATTTTCTTGAATGCTTTGATTGCGCATGAGGTTTCGTTTGCGCCTAT 812
Query 853 AGTTCCGCCGATTATATTGAATCTTGTTAAGAATCCGATAGTTGATGAGTTTGATCTTTC 912
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 813 AGTTCCGCCGATTATATTGAATCTTATTAAGAATCCGATAGTTGATGAGTTTGACCTTTC 872
Query 913 GAAGCTTAAACTTCAGTCTGTCATGACTGCTGCTGCTCCTTTAGCTCCTGAGCTTCTTAC 972
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 873 GAAGCTTAAACTTCAGTCTGTTATGACTGCTGCTGCTCCTTTAGCTCCTGAGCTTCTTAC 932
Query 973 TGCCTTCGAAGCCAAGTTTCCTAATGTCCAAGTCCAAGAGGCTTATGGATTAACGGAGCA 1032
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 933 TGCCTTCGAAGCCAAGTTTCCTAACGTCCAAGTCCAAGAGGCTTATGGATTAACGGAGCA 992
Query 1033 TAGTTGCATTACGTTAACTCACGGAGATCCAGAGAAAGGACAAGGAATCGCGAAACGAAA 1092
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 993 TAGTTGCATTACGTTAACTCACGGAGATCCAGAGAAAGGACAAGCAATCTCGAAACGAAA 1052
Query 1093 CTCGGTTGGTTTCATACTTCCGAATCTCGAGGTAAAGTTCATAGATCCTGACACCGGTAG 1152
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1053 CTCTGTCGGTTTCATACTTCCGAATCTCGAGGTGAAGTTCATAGATCCTGACACCGGTAG 1112
Query 1153 ATCACTCCCGAAGAACACTTCTGGTGAGCTATGTGTGAGGAGCCAATGTGTAATGCAAGG 1212
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ATCACTCCCGAAGAACACGTCCGGTGAGCTATGTGTGAGGAGCCAATGTGTAATGCAAGG 1172
Query 1213 TTACTTCATGAACAAGGAAGAGACTGACAAGACAATTGATGAACAAGGTTGGCTTCACAC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TTACTTCATGAACAAGGAAGAGACTGACAAGACAATTGATGAACAAGGTTGGCTTCACAC 1232
Query 1273 AGGAGACATAGGTTACATCGATGATGATGGAGACATCTTCATCGTTGATCGTATCAAAGA 1332
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1233 AGGAGATATAGGTTACATCGATGATGATGGAGATATCTTCATCGTTGATCGTATCAAAGA 1292
Query 1333 ACTTATTAAATACAAAGGTTTTCAGGTTGCTCCGGCCGAGCTTGAAGCTATTCTACTCAC 1392
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1293 ACTTATTAAATACAAAGGTTTCCAGGTTGCTCCCGCCGAGCTTGAAGCTATTCTACTCAC 1352
Query 1393 TCATCCATCCGTTGAAGACGTTGCCGTCGTGCCGTTACCGGACGAGGAAGCCGGGGAGAT 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TCATCCATCCGTTGAAGACGTTGCCGTCGTGCCGTTACCGGACGAGGAAGCCGGGGAGAT 1412
Query 1453 TCCGGCGGCTTGCGTGGTGATAAATCCGAAAGCGACAGAAAAGGAAGAAGACATTCTCAA 1512
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1413 TCCGGCGGCTTGCGTGGTGATAAATCCGAAAGCGACGGAGAAGGAAGAAGACATTCTCAA 1472
Query 1513 CTTTGTTGCAGCAAATGTGGCTCATTACAAGAAGGTTAGAGCCGTCCATTTTGTGGATTC 1572
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1473 CTTTGTTGCAGCAAATGTGGCTCATTACAAGAAGGTCAGAGCCGTCCATTTTGTGGATTC 1532
Query 1573 AATCCCTAAATCTCTCTCTGGTAAAATCATGAGGAGGCTTCTTAGAGACAAGATCCTCAG 1632
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 AATCCCCAAATCTCTCTCTGGTAAAATCATGAGGAGGCTTCTTAGAGACAAGATCCTCAG 1592
Query 1633 CATCAACAAGAAGTAG 1648
||||||||||||||||
Sbjct 1593 CATCAACAAGAAGTAG 1608
Score = 1070 bits (579), Expect = 0.0
Identities = 614/631 (97%), Gaps = 1/631 (0%)
Strand=Plus/Plus
Query 1 AAATTCAATTCGTTTAAAAATGGAGAGTCAAAAGCAAGAAGATAATGAATACATTTTCCG 60
||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3 AAATTCAATCCGTTAAAAAATGGAGAGTCAAAAGCAAGAAGACAATGAATACATTTTCCG 62
Query 61 CAGTTTGTATCCATCTGTGCCCATTCCTGACAAACTTACACTGCCTGAATTTGTGCTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CAGTTTGTATCCATCTGTGCCCATTCCTGACAAACTTACACTGCCTGAATTTGTGCTCCA 122
Query 121 AGGAGTTGAAGAATACACAGAGAATGTAGCGTTTGTAGAAGCGGTGACCGGAAAAGCTGT 180
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 123 AGGAGTTGAAGAATACACAGAAAATGTGGCGTTTGTAGAAGCGGTGACCGGAAAAGCGGT 182
Query 181 GACGTACGGTGATGTAGTGAGGGACACAAAGAGGCTAGCCAAAGCGTTGACATCTCTCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 183 GACGTACGGTGATGTAGTGAGGGACACAAAGAGGCTAGCCAAAGCGTTGACCTCTCTCGG 242
Query 241 ACTAAGGAAAGGTCAAGTGATGGTTGTGGTCCTACCAAACGTCGCCGAGTATGGGATTAT 300
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 243 ACTAAGGAAAGGTCAAGTAATGGTTGTGGTTCTACCAAACGTCGCTGAGTATGGGGTTAT 302
Query 301 TGCCCTTGGTATTATGTCTGCCGGTGGAGTCTTCTCCGGTGCAAATCCGACGGCTCTTGT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGCCCTTGGCATTATGTCTGCCGGTGGAGTCTTCTCCGGTGCAAATCCGACGGCTCTTGT 362
Query 361 TTCCGAGATCAAGAAGCAAGTTGAAGCTTCCGGTGCTAGAGGAATCATCACTGATGCTAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTCCGAGATCAAGAAGCAAGTTGAAGCTTCCGGTGCTAGAGGAATCATCACTGATGCTAC 422
Query 421 TAACTATGAAAAGGTGAAATCACTAGGTTTACCGGTGATAGTGTTAGGTGAAGAGAAGAT 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TAACTATGAAAAGGTGAAAACACTAGGTTTACCGGTGATAGTGTTAGGTGAAGAGAAGAT 482
Query 481 AGAAGGAGCAGTAAACTGGAAAGATCTTCTAGAAGCAGGAGACAAATGCGGAGATACCGA 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 483 CGAAGGAGCAGTAAACTGGAAAGATCTTCTAGAAGCAGGAGACAAATCCGGAGATACCGA 542
Query 541 CAATGAAGAGATTCTTCAGACAGATCTTTGTGCACTTCCTTTTTCTTCAGGAACAAC-AG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 543 CAATGAAGAGATTCTTCAGACAGATCTTTGTGCACTTCCTTTTTCTTCAGGAACAACCAG 602
Query 600 GATTACAAAAAGGAGTAATGCTCACACATCG 630
|||||||||||||||||||||||||||||||
Sbjct 603 GATTACAAAAAGGAGTAATGCTCACACATCG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5