BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62950.1
Length=2846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475059 jgi|Araly1|475059|fgenesh2_kg.2__189__AT1G62950.1 4255 0.0
Ahg920084 jgi|Araly1|920084|scaffold_101365.1 2047 0.0
> Ahg475059 jgi|Araly1|475059|fgenesh2_kg.2__189__AT1G62950.1
Length=2792
Score = 4255 bits (2304), Expect = 0.0
Identities = 2662/2830 (94%), Gaps = 44/2830 (2%)
Strand=Plus/Plus
Query 1 ATGCAGATTGGGAAATTGATTTGGGTAATAATGTTCATATTCGTTCACATTATTATTACA 60
||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||
Sbjct 1 ATGCAAATTGGGAAATTGATTTGGG---TAATGTTCACATTCGTTTAC---ATTATTACA 54
Query 61 TCATCT-CGAAGTTTCTCGGATTCTATTATTACCGAACGAGAGATTCTACTTCAATTCAA 119
|| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 55 TCTTCTCCG-AGTTTCTCGGTTTCTATTATTACCGAACGAGAGATTCTACTTCAATTCAG 113
Query 120 AGACAACATCAACGATGATCCGTACAACAGTTTAGCTTCTTGGGTCTCTAATGCTGACCT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 114 AGACAACATCAACGATGATCCGTACAACAGTTTAGCTTCTTGGGTCTCCAATGGTGATCT 173
Query 180 CTGTAACAGCTTCAATGGTGTATCTTGTAACCAAGAAGGATTCGTCGAAAAGATCGTTCT 239
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 TTGTAATAGCTTCAATGGTGTATCTTGTAACCGAGAAGGATTCGTCGAAAAGATCGTTCT 233
Query 240 TTGGAACACTAGTCTCGCCGGAACCCTAACGCCGGCATTGTCTGGTTTAACTTCTTTAAG 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTGGAACACAAGTCTCGCCGGAACCCTAACGCCGGCATTGTCTGGTTTAACTTCTTTAAG 293
Query 300 GGTTTTGACTCTGTTTGGCAACAGGATTACAGGTAATTTACCTTTGGATTACTTAAAGTT 359
|||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||
Sbjct 294 GGTTTTGACTCTGTTTGGCAACAGTTTTACAGGTAAGTTACCGTTGGATTACTCAAAGTT 353
Query 360 ACAGACTTTATGGAAGATCAATGTTAGTTCCAATGCATTGTCTGGTTTGGTTCCTGAATT 419
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 354 ACAGACTTTATGGAAGATCAATGTTAGTTCCAATGCATTGTCTGGTTCGATTCCTGAATT 413
Query 420 TATCGGTGATTTGCCTAATTTAAGGTTCTTGGATTTGTCGAAAAATGCG-TTCTTTGGAG 478
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 414 TATCGGTGATTTGCCTAATTTAAGGTTCTTGGATTTGTCGAAAAATG-GTTTCTTTGGAG 472
Query 479 AGATTCCAAATTCTCTGTTTAAATTCTG-TTACAAGACAAAGTTTGTTTCATTGTCTCAT 537
||||||| | |||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 473 AGATTCCGAGTTCTCTGTTTAAATTCTGCTT-CAAGACCAAGTTTGTTTCATTGTCTCAT 531
Query 538 AACAATCTCTCAGGATCAATCCCTGAATCAATCGTAAACTGTAACAATCTCATTGGTTTC 597
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||
Sbjct 532 AACAATCTCTCAGGATCTATCCCGGAATCAATCGTAAACTGTAACAATCTCATCGGCTTC 591
Query 598 GATTTCTCTTACAATGGCATTACCGGTTTGTTGCCTCGGATCTGCGATATTCCGGTTCTT 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 592 GATTTCTCTTACAATGGCATTACCGGTTTGTTGCCTCGAATCTGCGATATTCCGGTTCTT 651
Query 658 GAGTTTGTATCTGTTAGAAGAAATTTGTTGTCTGGTGATGTGTTTGAGGAGATATCGAAG 717
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 652 GAGTTTGTATCCGTTAGAAGAAATGTGTTGTCTGGTGATGTGTTTGAGGAGATATTGAAG 711
Query 718 TGTAAGAGATTGAGTCATGTCGATATAGGAAGCAATTCTTTCGATGGAGTAGCGTCTTTC 777
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 712 TGCAAGAGATTGAGCCATGTGGATATAGGAAGCAATTCTTTCGATGGAGTAGGGTCTTTC 771
Query 778 GAGGTTATTGGATTCAAGAACCTGACTTATTTTAATGTGTCTGGAAACCGGTTTAGAGGG 837
|||||| |||||||||||||| | |||||||| |||||||||||||||||||||| |||
Sbjct 772 GAGGTTCTTGGATTCAAGAACATAACTTATTTCAATGTGTCTGGAAACCGGTTTACCGGG 831
Query 838 GAGATTGGTGAGATTGTTGATTGTAGTGAAAGTTTGGAGTTTTTGGATGCTTCTTCGAAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GAGATTGGTGAGATTGTTGATTGTAGTGAAAGTTTGGAGTTTTTGGATGCTTCTTCGAAT 891
Query 898 GAGTTAACTGGTAATGTACCTAGCGGTATAACCGGATGCAAAAGTCTTAAGCTTTTGGAC 957
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAGTTAACGGGTAATGTACCTAGCGGTATAACCGGATGCAAAAGTCTTAAGCTTTTGGAC 951
Query 958 TTGGAATCGAATAGGCTCAATGGGAGTGTACCTGTAGGTATGGGGAAGATGGAGAAGCTC 1017
|||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 952 CTGGAATCGAATAAGCTCAATGGGAGTGTACCTGCAGGTATGAGGAAGATGGAGAAGCTC 1011
Query 1018 TCTGTGATCAGGTTAGGCGATAACTTTATAGATGGGAAGCTACCACTTGAGCTCGGAAAT 1077
||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1012 TCTGTGATCAGATTAGGCGATAACTTTATAGATGGGAAGATACCGCTCGAGCTCGGAAAT 1071
Query 1078 CTTGAGTATCTACAGGTTTTGAATTTGCATAATCTCAATCTCGTTGGTGAAATACCAGAG 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1072 CTTGAGTATCTACAGGTTTTGAATTTGCATAATCTCAATCTCATTGGTGAAATACCAGAG 1131
Query 1138 GATTTATCAAACTGCAGACTACTTCTTGAACTAGATGTTTCTGGAAATGGTTTGGAAGGA 1197
||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 1132 GATTTATCAAATTGCAGACTACTTCTTGAACTAGATGTTTCTGGGAATGCTTTAGAAGGA 1191
Query 1198 GAGATCCCTAAGAATCTATTGAACTTAACAAACTTAGAGATTCTTGATCTGCATCGGAAC 1257
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1192 GAGATCCCTAAGAATCTATTGAACTTAACAAACTTAGAGATCCTTGATCTGCATCGGAAC 1251
Query 1258 CGAATCAGTGGAAACATTCCGCCTAATCTCGGGAGCCTCTCGAGAATCCAGTTCCTCGAT 1317
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1252 CGAATCAGTGGAAGCATTCCGCCTAATCTTGGGAACCTCTCGAGAATCCAGTTCCTCGAT 1311
Query 1318 CTTTCAGAGAATTTGCTTTCTGGTCCTATCCCGTCTTCCCTCGA-GAATTTGAAAAGACT 1376
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||
Sbjct 1312 CTTTCAGAGAATTTGCTTTCTGGTCCTATCCCGTCTTCTCTC-AGGAATTTGAATAGACT 1370
Query 1377 GACTCATTTCAATGTTTCTTACAACAACCTCTCCGGCATTATCCCAAAGATTCAAGCTTC 1436
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1371 GACACATTTCAATGTTTCTTACAACAACCTCTCCGGCATTATTCCAAAGATTCAAGCTTC 1430
Query 1437 GGGAGCTTCTTCGTTTTCCAACAACCCTTTCCTCTGCGGTGATCCTCTTGAAACACCGTG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GGGAGCTTCTTCGTTTTCCAACAACCCTTTCCTCTGCGGTGATCCTCTTGAAACACCGTG 1490
Query 1497 CAATGCTCTCAGAACCGGATCAAGATCAAGAAAAACCAAAGCTCTAAGCACCTCTGTTAT 1556
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CAATGCTCTCAGAACTGGATCAAGATCAAGAAAAACCAAAGCTCTAAGCACCTCTGTTAT 1550
Query 1557 CATTGTTATCATCGCTGCTGCTGCGATCTTGGTTGGTATCTGTCTAGTGCTTGTCTTGAA 1616
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1551 CATTGTTATCATCGCTGCTGCTGCGATCTTGGCTGGTATCTGTCTAGTGCTTGTTTTGAA 1610
Query 1617 CCTTAGAGCTCGTAAAAGACGGAAAAAGCGTGAAGAAGAAATAGTCACTTTTGATACCAC 1676
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1611 CCTTAGGGCTCGTAAAAGACGGAAAAAGCCTGAAGAAGAAATAGTCACTTTTGATAACAC 1670
Query 1677 AACACCCACTCAGGCTTCAACGGAATCTGGTAATGGTGGTGTAACATTTGGGAAACTTGT 1736
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1671 AACACCCACACAGGCGTCAACGGAATCTGGTAATGGTGGTGTAACATTCGGGAAACTTGT 1730
Query 1737 TCTATTCAGCAAGAGTTTGCCTTCAAAATATGAAGATTGGGAGGCAGGTACGAAAGCATT 1796
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1731 TCTATTCAGCAAGAGTTTGCCTTCAAAGTATGAAGATTGGGAGGCGGGTACAAAAGCATT 1790
Query 1797 GCTCGACAAGGATAACATTATCGGTATTGGATCAATTGGAGCGGTTTATAGAGCATCTTT 1856
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1791 ACTCGACAAGGATAACATTATCGGTATTGGATCAGTTGGAGTGGTTTATAGAGCATCTTT 1850
Query 1857 CGAAGGCGGGGTTTCCATCGCAGTGAAAAAGCTCGAGACTCTAGGTAGAATCAGAAACCA 1916
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 1851 CGAAGGCGGGGTTTCCATTGCAGTGAAAAAGCTCGAGACTCTAGGAAGAATCAGAAGCCA 1910
Query 1917 AGAAGAGTTTGAGCAAGAAATAGGAAGGCTTGGAAGTTTAAGTCACCCGAATCTTGCTTC 1976
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1911 AGAAGAGTTTGAGCAAGAAATCGGAAGGCTTGGAAGTTTAAGTCACCCGAATCTTGCTTC 1970
Query 1977 TTTTCAAGGTTACTACTTTTCCTCCACAATGCAGTTAATTCTTTCTGAATTTGTCACAAA 2036
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1971 TTTTCAAGGTTACTACTTTTCCTCGACAATGCAGTTAATTCTTTCTGAATTTGTCACAAA 2030
Query 2037 CGGAAGC-TTGTACGATAATCTACACCCGAGAGTCTCCCATAGAACTAGCAGTAGCAGCA 2095
||||||| || || |||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 2031 CGGAAGCCTT-TATGATAATCTACACCCGAGAATCTCTCATAGAACCAGCAGTAGCAGCA 2089
Query 2096 GCAGCCATGGAAACACCGAGTTAAATTGGCATAGAAGATTTCAAATAGCAGTAGGAACCG 2155
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 2090 GCAGCCATGGAAACACCGAGTTAGATTGGCATAGAAGATTCCAAATAGCAGTAGGAACTG 2149
Query 2156 CAAAGGCGCTTTCTTTTCTTCACAACGATTGTAAACCCGCGATTCTTCATCTCAATGTAA 2215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2150 CAAAGGCGCTTTCTTTTCTTCACAACGATTGTAAACCCGCGATTCTTCATCTCAATATAA 2209
Query 2216 AGTCTACCAACATACTCCTTGATGAAAGATACGAGGCAAAGCTATCAGATTACGGTTTGG 2275
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2210 AGTCTACCAACATTCTCCTTGATGAAGGATACGAGGCAAAGCTATCAGATTACGGTTTGG 2269
Query 2276 AAAAGTTTCTTCCGGTTTTGAACAGCTCCGGTTTGACTAAGTTCCACAATGCGGTTGGAT 2335
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 2270 AAAAGTTTCTTCCGGTTTTGAACAGCTTCAATTTGAAGAAGTTCCACAATGCGGTTGGAT 2329
Query 2336 ACATAGCTCCAGAGCTAGCTCAGAGTTTGAGAGTGAGTGACAAATGTGATGTTTATAGCT 2395
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2330 ACATAGCTCCAGAGCTAGCTCAGAGTTTGAGAGTGAGTGATAAATGTGATGTTTATAGCT 2389
Query 2396 ATGGTGTGGTTCTTCTTGAGCTTGTTACAGGTAGAAAACCAGTGGAGTCGCCGTCTGAAA 2455
| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 2390 ACGGTGTAGTTCTTCTTGAGCTTGTTACAGGTAGAAAACCGGTGGAGTCGCCATCCGAAA 2449
Query 2456 ACGAGGTTGTGATCTTAAGGGATCATGTGAGGAATTTGTTGGAGACAGGTTCGGCTTCTG 2515
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 2450 ACGAGGTTTTGATCTTAAGGGATCATGTGAGGGATTTGTTGGAGACAGGGTCGGCTTCTG 2509
Query 2516 ATTGTTTTGACAGAAGATTGAGAGGGTTTGAAGAGAATGAGCTGATTCAAGTGATGAAAT 2575
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2510 ATTGTTTTGACAGTAGATTGATTGGGTTTGAAGAGAATGAGCTGATTCAAGTGATGAAAT 2569
Query 2576 TAGGTTTGATTTGCACAACAGAGAATCCATTAAAGAGACCGAGCATTGCAGAGGTTGTGC 2635
||||| || ||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2570 TAGGTCTGCTTTGCACGACAGAGAATCCATTGAAGAGACCGAGCATGGCAGAGGTTGTGC 2629
Query 2636 AGGTTCTTGAACTGATCAGAAATGGAATGGAATCATGAAAAGAACTCGTTTA-TTTTTGC 2694
||||||||||| |||||||||||||||||||||||||| | ||| ||||||| |||||||
Sbjct 2630 AGGTTCTTGAATTGATCAGAAATGGAATGGAATCATGAGA-GAATTCGTTTAGTTTTTGC 2688
Query 2695 AGAGAAATTGTGTAGTGTTTACTGTTAAGTTCATTCATTTGTGATTCTTTTGTCTGTTTT 2754
||||| |||||| |||||||||| || || | | || || | || ||
Sbjct 2689 AGAGATATTGTGCAGTGTTTACT-TT--GT-C-T------GT--TT-T---GT-TG---- 2726
Query 2755 GTTGCTAAAATTGGTAAAAGTTCCATTAACCGGGTCTTCTCTAACCTTAAACCGATTCTG 2814
||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 2727 ----CTAAAATTGGTAAAAGTTCTATTGACCGGGTCTTCTCTAACCTTAAACCGATCCTG 2782
Query 2815 GATTGATATT 2824
||||| ||||
Sbjct 2783 GATTGGTATT 2792
> Ahg920084 jgi|Araly1|920084|scaffold_101365.1
Length=2691
Score = 2047 bits (1108), Expect = 0.0
Identities = 2149/2639 (81%), Gaps = 121/2639 (5%)
Strand=Plus/Plus
Query 97 CGAGAGATTCTACTTCAATTCAAAGACAACATCAACGATGATCCGTACAACAGTTTAGCT 156
||||| ||| | ||||| |||||||||| |||| || ||||||||||||||||| |||
Sbjct 101 CGAGACATTTTGCTTCAGTTCAAAGACAGTATCAGTGACGATCCGTACAACAGTTTGGCT 160
Query 157 TCTTGGGTCTCTAATGCTGACCTCTGTAACAGCTTCAATGGTGT-ATCTTGTAACCAAGA 215
||||||||||| | | ||||||||| || ||||||||||| || | ||||||||| | |
Sbjct 161 TCTTGGGTCTCCGACGGTGACCTCTGCAATAGCTTCAATGGAGTCA-CTTGTAACCCACA 219
Query 216 AGGATTCGTCGA-AAAGATCGTTCTTTGGAACACTAGTCTCGCCGGAACCCTAACGCCGG 274
||| ||||| || ||| ||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 220 AGGTTTCGTGGACAAA-ATCGTTCTTTGGAACACCAGTCTCGCCGGAACCCTAGCTCCGG 278
Query 275 CATTGTCTGGT-TTAACTTCT-TTAAGGGTTTTGA-CTCTGTTTGGCAACAGGATTACAG 331
|||||| | | || || | || | ||| ||| || |||||||||||||| ||||||
Sbjct 279 GATTGTCAAATCTAAAGTT-TGTT-CGAGTTCTGACCT-TGTTTGGCAACAGGTTTACAG 335
Query 332 GTAATTTACCTTTGGATTACTTAAAGTTACAGACTTTATGGAAGATCAATGTTAGTTCCA 391
|||||||||| |||||||||| |||||| || ||||| |||| ||| |||||||||||||
Sbjct 336 GTAATTTACCGTTGGATTACTCAAAGTTGCAAACTTTGTGGACGATTAATGTTAGTTCCA 395
Query 392 ATGCATTGTCTGGTTTGGTTCCTGAATTTATCGGTGATTTGCCTAATTTAAGG-TTCTTG 450
|||| ||||||||| | | || || ||||||||||| ||| ||| |||||| |||||
Sbjct 396 ATGCGTTGTCTGGTACGATCCCGGAGTTTATCGGTGAATTGTCTAGCTTAAGGTTTCTT- 454
Query 451 GATTTGTCGAAAAATGCG-TTCTTTGGAGAGATTCCAAATTCTCTGTTTAAATTCTGTTA 509
|| ||||| ||||||| | ||| ||||||||||| |||||||||||| |||||| |
Sbjct 455 GACTTGTCTAAAAATG-GTTTCACCGGAGAGATTCCGGTTTCTCTGTTTAAGTTCTGTGA 513
Query 510 CAAGA-CAAAGTTTGTTTCATTGTCTCATAACAATCTCTCAGGATCAATCCCT-GAATCA 567
|||| |||| ||||||||| ||||||||||||||||||| |||||||||||| | | |
Sbjct 514 GAAGACCAAA-TTTGTTTCACTGTCTCATAACAATCTCTCTGGATCAATCCCTGGTA-CG 571
Query 568 ATCGTAAACTGTAACAATCTCATTGG-TTTCGATTTCTCTTACAATGGCAT-T-ACCGGT 624
||||| ||||||||||| ||| | || ||| ||||||||||| ||| || | | ||
Sbjct 572 ATCGTGAACTGTAACAACCTCGTAGGATTT-GATTTCTCTTATAAT--AATCTGAAGGGA 628
Query 625 TTGTT---GCCTCGGATCTGCGATATTCCGGTTCTTGAGTTTGTATC-T-GTTAGAAGA- 678
|||| |||| |||| || ||||||||||| |||||| | |||| | || |||| |
Sbjct 629 GTGTTACCGCCTAGGATTTGTGATATTCCGGTGCTTGAG--TATATCTTAGTGAGAA-AC 685
Query 679 AATTTGTTGTCTGGTGATGTGTTTGAGGAGATATCGAAGTGTAAGAGATTGAGTCATGTC 738
|||||||||||||||||||| ||||| |||||| ||| ||| |||| |||| || ||||
Sbjct 686 AATTTGTTGTCTGGTGATGTCTTTGACGAGATAAAGAAATGTCAGAGGTTGATTCTTGTC 745
Query 739 GATATAGGAAGCAA-TTCTTTCGATGGAGTAGCGTCTTTCGAGGTTATT-GGATTCAAGA 796
||| | |||||||| || |||| ||||| ||||| |||| ||||| || | |||||||
Sbjct 746 GATTTCGGAAGCAATTTGTTTC-ATGGATTAGCGCCTTTTGAGGTCCTTACG-TTCAAGA 803
Query 797 ACCTGACTTATTTTAATGTGTC-TGGAAACCGGTTTAGAGGGGAGATTGGTGAGATTGTT 855
|| | ||||| || ||||| || ||| ||||||||| | ||||||||||| ||||| |||
Sbjct 804 ACATAACTTACTTCAATGTCTCTTGG-AACCGGTTTGGTGGGGAGATTGGAGAGATAGTT 862
Query 856 GATTGTAGTGAAAGTTTGGAGTTTTTGGATGCTTCTTCGAATGAGTTAACTGGTAATG-T 914
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 863 GATTGCAGTGAAAGTTTGGAGTTTTTGGATGCTTCGTCGAATGAGTTAACTGGT-AGGAT 921
Query 915 ACCTAGCGGTATAACCGGATGCAAAAGTCTTAAGCTTTTGGACTTGGAATCGAATAGGCT 974
|| | ||| | || ||||||||||| ||||||||||| ||||| || || | |||
Sbjct 922 CCCAAATGGTGTTGTGGGTTGCAAAAGTCTCAAGCTTTTGGATTTGGAGTCTAACAAGCT 981
Query 975 CAATGGGAGTGTACCTGTAGGTATGGGGAAGATGGAGAAGCTCTCTGTGATCAGGTTAGG 1034
||||| ||| | |||| |||||| | ||||||||||| |||||| |||||||| |||||
Sbjct 982 GAATGGTAGTATCCCTGGAGGTATCGAGAAGATGGAGACGCTCTCGGTGATCAGATTAGG 1041
Query 1035 CGATAACTT-TATAGATGGGAAGCTACCACTTGAGCTCGGAAATCTT-GAGTATCTACAG 1092
| |||| || |||||||||| || ||||| ||| | |||| | || |||| ||||||
Sbjct 1042 CAATAA-TTCTATAGATGGGGAGATACCAAGAGAGATTGGAAGT-TTGGAGTTTCTACAA 1099
Query 1093 GTTTTGAATTTGCATAATCTCAATCTCGTTGGTGAAATACCAGAGGATTTATCAAACTGC 1152
||||||||| ||||||| ||||||||| |||||||| | ||||||||| |||| || |||
Sbjct 1100 GTTTTGAATCTGCATAACCTCAATCTCATTGGTGAAGTTCCAGAGGATATATCTAATTGC 1159
Query 1153 AGACTACTTCTTGAACTAGATGTTTCTGGAAATGGTTTGGAAGGAGAGATCCCTAAGAAT 1212
||| |||||||||||||||||||||| || ||| ||| ||||||||| ||||||||||
Sbjct 1160 AGAGTACTTCTTGAACTAGATGTTTCAGGTAATAATTTAGAAGGAGAGGTCCCTAAGAAG 1219
Query 1213 CTATTGAACTTAACAAACTTAGAGATTCTTGATCTGCATCGGAACCGAATCAGTGGAAAC 1272
||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1220 CTATTAAACTTAACAAACTTAGAGATTCTTGATCTGCATCGAAACCGTCTCAATGGAAGT 1279
Query 1273 ATTCCGCCT-AATCTCGGGAGCCTCTCGAGAATCCAGTTCCTCGATCTTTCAGAGAATTT 1331
||||| ||| || || || | |||||| ||||||||||| || ||||||||| ||||||
Sbjct 1280 ATTCCACCTGAA-CTTGGAAACCTCTCCAGAATCCAGTTTCTTGATCTTTCACAGAATTC 1338
Query 1332 GCTTTCTGGTCCTATCCCGTCTTCCCTCGAGAATTTGAAAAG-ACTGACTCATTTCAATG 1390
||||| ||| | |||||||||||||||||||||||| | | ||| || ||||||||||
Sbjct 1339 ACTTTCAGGTTCAATCCCGTCTTCCCTCGAGAATTTG-CATGCACTAACACATTTCAATG 1397
Query 1391 TTTCTTACAACAACCTCTCCGGCATTA----T-C----CCAAAGATTCAAGC-TTCGGGA 1440
| || |||||||| |||||||| |||| | | ||| ||| ||||| ||| |||
Sbjct 1398 TCTCCTACAACAATCTCTCCGGTATTATCCCTCCTGTTCCAGTGATACAAGCTTTC-GGA 1456
Query 1441 GCTTCTTCGTTTTCCAACAACCCTTTCCTCTGCGGTGATCCTCTTGAAACACCGTGCAAT 1500
||||| ||||||| |||||||||||||| |||||||||||||||| ||| || ||||||
Sbjct 1457 TCTTCTGCGTTTTCAAACAACCCTTTCCTTTGCGGTGATCCTCTTGTAACTCCCTGCAAT 1516
Query 1501 GCTC-TCAGAACCGGATCAAGATCAAGAAAAACCAAAGCTCTAAGCACCTCTGTTATCAT 1559
||| | | | | | ||| ||| ||||| | || |||||||||| || ||||||||
Sbjct 1517 TCTCGT-GGGGCTGCAGCAAAATCCAGAAATTCTAATGCTCTAAGCATTTCGGTTATCAT 1575
Query 1560 TGTTATCATCGCTGCTGCTGCGATCTTGGTTGGTATCTGTCTAGTGCTTGTC-TTGAACC 1618
|||||| || || |||||| ||| | ||||| ||||| ||||||||| | |||||||
Sbjct 1576 TGTTATTATTGCGGCTGCTATTATCCTCTTTGGTGTCTGTATAGTGCTTG-CTTTGAACC 1634
Query 1619 TTAGAGCTCGTAAAAGACGGA-AAAAGCGTGAAGAAGAAATAGTCACTTTTGATACCACA 1677
| ||||||||| ||| | ||| ||||| || || |||||| | || | || | ||
Sbjct 1635 TAAGAGCTCGT-AAA-A-GGAGAAAAG-ATG-AG--GAAATACTTACAGTGGA-A--AC- 1683
Query 1678 ACACCCACTCAGGCTTCAACGGAATCTG-GTAATGGTGGTGTAACATTTGGGAAA-CTTG 1735
||| | ||| ||| || | ||| || | | | ||||| | | | ||||| ||||
Sbjct 1684 -CACTC-CTCTGGCGTCTTC--AAT-TGACT-CTAGCGGTGTGATA-ATCGGAAAGCTTG 1736
Query 1736 TTCTATTCAGCAAGAGTTTGCCTTCAAAATATGAAGATTGGGAGGCAGGTACGAAAGCAT 1795
|||| |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||| |
Sbjct 1737 TTCTTTTCAGCAAGAATTTGCCATCAAAATATGAAGATTGGGAGGCGGGTACAAAAGCTT 1796
Query 1796 TGCTCGACAAGGATAACATTATCGGTATTGGATCAATTGGAGCGGTTTATAGAGCATCTT 1855
| |||||||| || || || || || || || || |||||| | || |||||||||||||
Sbjct 1797 TACTCGACAAAGAAAATATAATTGGCATGGGGTCGATTGGATCAGTCTATAGAGCATCTT 1856
Query 1856 TCGAAGGCGGGGTTTCCATCGCAGTGAAAAAGCTCGAGACTCTAGGTAGAATCAGAAACC 1915
||||||| ||||||||||| |||||||| ||||| |||||| | || |||||||||||||
Sbjct 1857 TCGAAGGAGGGGTTTCCATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGAATCAGAAACC 1916
Query 1916 AAGAAGAGTTTGAGCAAGAAATAGGAAGGCTTGGAAGTTT--AAGTCACCCGAATCTTG- 1972
|||||||||||||||||||||| ||| |||||||| |||| || || ||||||| ||
Sbjct 1917 AAGAAGAGTTTGAGCAAGAAATCGGACGGCTTGGAGGTTTGCAA--CATCCGAATC-TGT 1973
Query 1973 CTTCTTTTCAAGGTTACTACTTTTCCTCCACAATGCAGTTAATTCTT-TCTGAATTTGTC 2031
||||||| |||||||||||||||||||| ||||||||||| ||| || ||||||||||||
Sbjct 1974 CTTCTTTCCAAGGTTACTACTTTTCCTCAACAATGCAGTTGATT-TTCTCTGAATTTGTC 2032
Query 2032 ACAAACGGAAGCTTGTACGATAATCTACACCCGAGAGTCT-CCCATAGAACTAGCAGTAG 2090
| ||||| ||| | ||||||||||||||| ||| | | ||| | |||| | ||
Sbjct 2033 CCTAACGGTAGCCTCTACGATAATCTACACTTAAGAATTTACCC-TGGAAC---C---AG 2085
Query 2091 CAGCAGCAGCCATGGAAACACCGAGTTAAATTGGCATAGAAGATTTCAAATAGCAGTAGG 2150
| || |||||||| || ||||| || |||||||| ||||||||||| || || ||||
Sbjct 2086 C-TCA--AGCCATGGGAATACCGATTTGAATTGGCACAGAAGATTTCAGATTGCTTTAGG 2142
Query 2151 AACCGC-AAAGGCGCTTTCTTTTCTTCACAACGATTGTAAACCCGCGATTCTTCATCTCA 2209
|||||| ||| ||||| ||||| || ||||| || |||||||| || |||||||||||||
Sbjct 2143 AACCGCGAAA-GCGCTCTCTTTCCTACACAATGACTGTAAACCGGCAATTCTTCATCTCA 2201
Query 2210 ATGTAAAGTCTACCAACATACTCCTTGATGAAAGATACGAGGCAAAGCTATCAGATTACG 2269
|||| ||||| |||||||| || || || |||||||| |||||||||||||| ||||| |
Sbjct 2202 ATGTTAAGTCCACCAACATTCTTCTAGACGAAAGATATGAGGCAAAGCTATCGGATTATG 2261
Query 2270 GTTTGGAAAAGTTTCTTCCGGTTTTGAACAGCTCCGGTTTGA-C--TAAGTTCCACAATG 2326
| || |||||||||||||||||| || |||||| |||||||| | ||||||||||| |
Sbjct 2262 GGTTAGAAAAGTTTCTTCCGGTTATGGACAGCTTCGGTTTGACCAAGAAGTTCCACAACG 2321
Query 2327 CGGTTGGATACATAGCTCCAGAGCTAGCT---CAGAGTTTGAGAGTGAGTGACAAATGTG 2383
||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 2322 CGGTTGGGTACATTGCTCCAGAGCTAGCTCAGCAGAGTTTGAGAGTGAGTGAGAAATGCG 2381
Query 2384 ATGTTTATAGCTATGGTGTGGTTCTTCTTGAGCTTGTTACAGGTAGAAAACCAGTGGAGT 2443
| || ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 2382 ACGTGTATAGTTATGGTGTAGTTCTTCTTGAGCTGGTTACAGGTAGAAAACCGGTGGAGT 2441
Query 2444 CGCCGTCTGA-AAACGAGGT-TGTGATCTTAAGGGATCATGTGAGGAATTTGTTGGAGAC 2501
| || || || |||| | || | ||||||| || ||| |||||||| |||||||||| ||
Sbjct 2442 CTCCATC-GAGAAACCAAGTCT-TGATCTTGAGAGATTATGTGAGGGATTTGTTGGAAAC 2499
Query 2502 AGGTTCGGCTTCTGATTGTTTTGACAGAAGATTGAGAGGGTTTGAAGAGAATGAGCTGAT 2561
||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 2500 TGGTTCGGCTTCTGATTGTTTTGACAGAAGGTTGAGAGAGTTTGAAGAGAACGAGCTGAT 2559
Query 2562 TCAAGTGATGAAATTAGGTTTGATTTGCACAACAGAGAATCCATTAAAGAGACCGAGCAT 2621
|||||| ||||| ||||| | |||| || ||||||||||| | ||||||||||| ||
Sbjct 2560 TCAAGTCATGAAGTTAGGACTCCTTTGTACGTCAGAGAATCCACTGAAGAGACCGAGTAT 2619
Query 2622 TGCAGAGGTTGTGCAGGTTCTTGAACTGA-TCAGAAATGGAAT-GGAATCATGA-AAAG 2677
|| | ||||||||||||||||||| | | | ||||||||| | ||| |||||| ||||
Sbjct 2620 GGCTGCGGTTGTGCAGGTTCTTGAA-TCAATTAGAAATGGATTTGGA-TCATGATAAAG 2676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107414490900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5