BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62960.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924694 jgi|Araly1|924694|scaffold_200255.1 2900 0.0
> Ahg924694 jgi|Araly1|924694|scaffold_200255.1
Length=1725
Score = 2900 bits (1570), Expect = 0.0
Identities = 1673/1724 (97%), Gaps = 2/1724 (0%)
Strand=Plus/Plus
Query 58 TTATTTACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTATTAACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 61
Query 118 AGCTCCAATTCCGATTCCGATAAGAATTCCGGTAACGTCGGCGGAGGTAGAACCACCGGG 177
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 62 AGCTCCAATTCAGATTCCGATAAGAATTCCGGTAACGGCGGCGGAGGTAGAACCACCGCG 121
Query 178 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTAGGC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 122 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTGGGC 181
Query 238 TCTGTGATTCCTTGTGCTTTCTTCTACTTTCTTCAGTTTTACCTAAAACGAAATCGTAAA 297
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 182 TCTGTTATTCCTTGTGCTTTCTTCTACTTTCTCCAGTTTTACCTAAAACGAAATCGGAAA 241
Query 298 AACGACGAATCAGATAATTCCGGTGAACAAAACTCCTCAGcttcttcttcttcttctCCT 357
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AACGACGAATCCGATAATTCCGGTGAACAAAACTCCTCAGCTTCTTCTTCTTCTTCTCCA 301
Query 358 AATTCGGGTTTACCGGATCCCACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 417
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 302 AATTCGGGTTTACCGGATCCGACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 361
Query 418 GGTTTACCTCGTTCTCTCTCTCGTATTCTCCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 477
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 362 GGTTTACCTCGTTCTCTTTCTCGGATTCTTCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 421
Query 478 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 481
Query 538 GGTCAAAAACGGGTCGAGGATGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 482 GGTCAAAAACGGGTCGAGGAAGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 541
Query 598 CAACTTGGTTTAGCTCAAAACAACAAGTTGAGTTTGGATGATTGGGTTTTAGAGAATCCA 657
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 542 CAACTTGGTTTAGCTCAAAACACCAAGTTGAGTTTGGATGATTGGGTTTTGGAGAATCCA 601
Query 658 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 661
Query 718 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGACTGAAGCTACCAAAAACTCG 777
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 662 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGTCTGAAGCAACCAAAAATTCG 721
Query 778 GTGACTTTTGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 837
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGTCTTTCGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 781
Query 838 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCTCCC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 782 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCCCCC 841
Query 898 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCATGTAGA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCTTGTAGA 901
Query 958 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCTAAG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 902 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCCAAG 961
Query 1018 AAACGAGGTGTAAGAATCCGCGGCATTATAATCTCGAATCCTTCAAATCCCATGGGAAGC 1077
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 962 AAACGAGGTGTCAGAATCCGTGGCATTATAATCTCGAATCCTTCGAATCCCATGGGAAGC 1021
Query 1078 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1081
Query 1138 ATTATATCAAACGAAATCTTTGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1197
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ATAATCTCAAACGAAATCTTCGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1141
Query 1198 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGGGAAAGAGTTCATATCGTGTAT 1257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1142 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGAGAAAGAGTTCATATCGTGTAT 1201
Query 1258 GACCTTTCGAAAGACTTGTCTTTCCGGGGGCTTAGATCCGCTGCTATCTACTCGTTCAAC 1317
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1202 GACCTCTCGAAAGACTTGTCTTTCCCGGGACTTAGATCCGCTGCTATCTACTCGTTCAAC 1261
Query 1318 GAGAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCTCCAACC 1377
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1262 GAAAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCGCCAACC 1321
Query 1378 CAACATTTGCTGATATCCGCAATCTCCAATCCAAAAAATGTTCAGAGATTTGTGAAAACC 1437
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1322 CAACATTTGCTGATATCGGCAATCTCCAATCCAAAGAATGTTCAGAGACTTGTGAAAACC 1381
Query 1438 AACAGGCAGAGATTGCAGAGTATCTACACGGAGCTCGTGGAGGGGTTGAAAGAGTTAGGG 1497
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 1382 AACAGGCAGAGATTGCAGAGTATATACACGGAACTCGTGAAGGGGTTGAAAGAGTTAGGG 1441
Query 1498 ATCGAGTGCACAAGAAGCAATGGAGGGTTCTACTGTTGGGCTGATATGCGAGGATTGATT 1557
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1442 ATCGAGTGCACAAAAAGCAATGGAGGGTTCTACTGTTGGGCCGATATGCGAGGATTGATT 1501
Query 1558 TCATCTTACAGCGAAAAAGGCGAGATTGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1617
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1502 TCATCTTACAGCGAAAAAGGCGAGATCGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1561
Query 1618 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1621
Query 1678 TTCAGTAATTTGTCTGAGAGAGATGTGCCAGTAGTTATGAACCGCATTAGAAAAGTTTGT 1737
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1622 TTCAGTAATTTGTCTGAGAGAGATGTGCCTGTAGTTATGAACCGCATTAGAAAAGTTTGT 1681
Query 1738 GAAACATGTAAATCTCAAAATTGATTA--CAATTTGATTATTTG 1779
||||||||||||||||||||||||| |||||||||||||||
Sbjct 1682 CAAACATGTAAATCTCAAAATTGATTCTGCAATTTGATTATTTG 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5