BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62970.1
Length=2737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475057 jgi|Araly1|475057|fgenesh2_kg.2__187__AT1G62970.1 3251 0.0
> Ahg475057 jgi|Araly1|475057|fgenesh2_kg.2__187__AT1G62970.1
Length=2626
Score = 3251 bits (1760), Expect = 0.0
Identities = 2315/2569 (90%), Gaps = 93/2569 (4%)
Strand=Plus/Plus
Query 1 CTCTCTCTCCGACGGAGAAGAAGTCTCTCCGACTGTGTCAAATGATGAGCCATGGTGGTG 60
||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||
Sbjct 1 CTCTCTCTCCGACGGAGAAAAAG--TCTCCGACTGTGTAAAATGATGAACCATGGTGGTG 58
Query 61 GCGGCGGCGTAAGTAACGGAGGAGGAGGAGACGCTGAACGAATGCTAGCTCAAGCAGAGA 120
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 59 GCGGCGGCGGAGGTAACGGAGGAGGAGGAGACGCTGAACGTATGCTAGCTCAAGCAGAGA 118
Query 121 AGCTACTCTTAAGCGGAGACTTAAACGGTTCAAAAACCTACGCGATCCGCGCATGCGAAG 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCTACTCTTAAGCGGCGACTTAAACGGTTCAAAAACCTACGCGATCCGCGCATGCGAAG 178
Query 181 CCGATCACTCACTCGTAGACCACGCCGAACTAATCCTCGCCGTCGCTGACACTCTAGTCG 240
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 179 CCGATCACTCACTCGTAGACCACGCCGAGTTAATCCTCGCCGTCGCCGACACTCTAATCG 238
Query 241 CCGGAGAATCACGAATCAGAGGAACAACCTCCGATCTTCCCGACTGGTACGCCGTTCTCC 300
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 239 CCGGAGAATCACGAATCAGAGGAACCACTTCCGATCTTCCCGACTGGTACGCCGTGCTCC 298
Query 301 GCCTCGTTCGTTTAACTCACAACCCCGAACTCGTCGCGACTCAGTACAGTAGACTCGCCG 360
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 GTCTCGTTCGTTTAACTCACAACCCTGAACTCGTCGCGACTCAGTACAGTAGACTCGCCG 358
Query 361 TGTTGCTTAACCCGAGTCGGAATCGGTATCCGTATTCTGAACAAGCTTTTAGGTTAATCT 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 359 TGTTGCTTAACCCGAGTCGGAATCGGTTTCCGTATTCTGAACAAGCTTTTAGGTTAATCT 418
Query 421 CTGATGCTTGGTATGTTCTCTCTGATCCTTCTAGAAAGACATTGTATGATAGAGAATTGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTGATGCTTGGTATGTTCTCTCTGATCCTTCTAGAAAGACATTGTATGATAGAGAATTGC 478
Query 481 ATCTGAGTCAATTTGGGCAACTCGGTCAATTAGGGTTTCAGCTTTTCAATCAAACGCCAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATCTGAGTCAATTTGGGCAACTCGGTCAATTAGGGTTTCAGCTTTTCAATCAAACGCCAC 538
Query 541 AATCTCAGTCTCAGTCTCCTCAACATCATCAGCAACAATCTCAATCGCCTCAACATCCTA 600
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 539 AATCTCAGTCTCAATCTCCTCAACATCATCAGCAACAATCTCAATCACCTCAACATC--A 596
Query 601 ACCAGAACCAAACAGTGTCGTTTCAGAATCAGCAGTTACCATTTCAGCTTCATCAACCAC 660
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ----GAACCAGACGGTGTCGTTTCAGAATCAGCAGTTACCATTTCAGCTTCATCAACCAC 652
Query 661 ATTTTGCTCAAGCTGTTCAGACTCAGTCTCAGTCACAGCAGCAAAGGTCTCAATTTGATC 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 653 ATTTTGCTCAAGCTGTTCAGACTCAGTCTCAGTCCCAGCAGCAAAGGTCTCAATTTGATC 712
Query 721 AGCAGTTATTGCAGGAGCAACAACAAGCATCTTGGAGGCAACAGGTTGGTCAAGAGCATA 780
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 713 AGCAGTTATTGCAGGAGCAACAACAAGCATCTTGGAGGCAACAGTTTGGTCAAGAGCAAA 772
Query 781 GTAGTGGTTCGAGTGGTGACTGGAAAAGACCAGTGGAAGAAGTGAGGTTGATTAATTTGA 840
|||||||||||||| |||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 773 GTAGTGGTTCGAGTAGTGATTGGAAAAGACCAGTGGAGGAAGAGAGGTTGATTAATTTGA 832
Query 841 ACAATGCAACTGAAAGGGTTCAATCTAGTCGTCGTTTTGCTGAGCCAGAGCGGCCGCCTA 900
|||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||
Sbjct 833 ACAATGCAACTGAAAGGGTTCAGTCCAGTCGTCGTTTTGCTGAGCCGGATCGGCCGCCTA 892
Query 901 GTAGATCCTTTGAGGGATCTTCTCATAGGACTCCTTCAACTGAATTGACATGGGCGTCTA 960
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 893 GTAGATCTTTTGAGGGATCTTCTCATAGGACTCCTTCAACAGATTTGACATGGGCGTCTA 952
Query 961 AGCCTACTCCAGTGTCTGAGCCTGTACGTCACTCTGAGCTTGTACCGTGGCAATACTCTG 1020
|||||||||| ||||||||| |||||| || | | || | | | | || |
Sbjct 953 AGCCTACTCCGGTGTCTGAGTCTGTAC--CA-T--G-GCA---A---T---A-T--TCGG 994
Query 1021 AGCCGGCTAGGCAATATCAGTTATCTAGTAGGTCTAGTGAAGCTGCTCAACTCTCGCTGC 1080
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 995 AGCCGGCTAGGCAGTATCAGTCATCAAGTAGGTCTAGTGAAGCTGCTCAACTCTCGCTGC 1054
Query 1081 TGCCTTCTGTTTCTGACTCATCTCATGCATCTCAGCCAACTCGCTCGAATCAGTCACATG 1140
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGCCTTGTGTTTCTGACTCACCTCATGCATCTCAGCCAACTCGCTCGAATCAGTCACATG 1114
Query 1141 CAGTCTCTAAACCGCAGCCTGTTTCTAAGCCACATCCGCCATTCCCAATGTCTCAGCCAC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 CAGTCTCTAAACCGCAGCCTGTTTCTAAGCCACATCCGCCATTCCCAATGTCTCAGCCAC 1174
Query 1201 CACCGACCTCTAACCCATTTCCATTGTCTCAGCCACCATCGAACTCTAAGCCGTTTCC-G 1259
||||||||||||||||||||||||||||||||||||| |||| ||||||||| || || |
Sbjct 1175 CACCGACCTCTAACCCATTTCCATTGTCTCAGCCACCTTCGACCTCTAAGCCATTCCCTG 1234
Query 1260 ATG-TCTCAGTCATCGCAAAACTCTAAGCCATTCCCAGTGTCTCAGTCATCACAAAAGTC 1318
|| | ||||||||||||||| |||||||| || || || |||||||||| |||||||||
Sbjct 1235 -TGAT-TCAGTCATCGCAAAAGTCTAAGCCTTTGCCGGTTTCTCAGTCATTACAAAAGTC 1292
Query 1319 TAAGCCTTTGCTGGTTTCTCAGTCATCACAAAGGTCAAAGCC-ATTGCCGGTCTCTCAGT 1377
||||| |||| ||| |||||||||||||||| || | ||| ||| ||||| ||||||
Sbjct 1293 AAAGCCATTGCCGGTCTCTCAGTCATCACAAAACTCTA-GCCCATTCCCGGTGTCTCAGC 1351
Query 1378 CATTA-CAAAACTCTAACCCATTC-CCGGTGTCTCAGCCATCATCAAAC-TCTAAGCCAT 1434
||| | |||| |||||| |||||| || ||||||||||| || | | ||||||||||
Sbjct 1352 CATCATCAAA-CTCTAAGCCATTCTCCA-TGTCTCAGCCA-CAACCGGCCTCTAAGCCAT 1408
Query 1435 TTCCCG-TGTCTCAGCCA-CAACCCG-CTTCTAACCCGTTCCCGGTGTCCCAACCAAGAC 1491
| |||| | || || ||| || || || |||| || ||| || |||| |||||| |
Sbjct 1409 T-CCCGGTTTCCCAACCAACA-CCAAACT-CTAAGCCATTCTCGATGTCTCAACCATCAT 1465
Query 1492 CAAATTCTCAG-CCATTCTC-G-ATGTCTCAACCATCATCGAC-TGCTAGGCCTTTTCC- 1546
| | | || || || ||| | | || |||| ||| || || | | ||| | | || ||
Sbjct 1466 CGACTGCT-AGGCCTTTCCCAGCAT--CTCAGCCACCAGCGGCCT-CTAAGTCATTCCCC 1521
Query 1547 AGCATCTCAGCCACCAGCGGCCTCTAAGTCATTCCCTA-TCTCTCAGCCACCAACGACCT 1605
| | |||||||| ||| || |||||||| ||||||| | | ||||||||||| || |||
Sbjct 1522 ATC-TCTCAGCCCCCACCGACCTCTAAGCCATTCCC-AGTGTCTCAGCCACCTCCGGCCT 1579
Query 1606 CTAAGCCATTTGTGTCTCAGCCACCCAATACCTCTAAGCCAATGCCGGTATCTCAGCCAC 1665
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 CTAAGCCATTTGTGACTCAGCCACCCAATACCTCTAAGCCAATGCCGGTATCTCAGCCAC 1639
Query 1666 CTACAACCTCTAAGCCGTTGCCAGTGTCTCAGCCACCACCGACATTTCAATCAACCTGTC 1725
||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1640 CTATAACCTCTATGCCGTTGCCAGTGTCTCAGCCACCACCGGTATTTCAATCAACCCGTC 1699
Query 1726 CCTCTCAGCCACCTGCAGCCTCTAGTTCTCTCT-CTCCACTGCCTCCAGTCTTCAATTCA 1784
|||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||
Sbjct 1700 CCTCTCAGCCACCTGCAGCCTCTAGTTCTC-CTTCTCAACTGCCTCCTGTCTTCAATTCA 1758
Query 1785 ACTCAATCATTCCAGTCACCTCCTGTTTCTACTACTCCCTCTGCAGTTCCAGAAGCCTCG 1844
| |||||||||||| ||||| |||| ||||||||||||||| | ||||||| ||||||
Sbjct 1759 GCACAATCATTCCAGCCACCTACTGTCTCTACTACTCCCTCTCCGGTTCCAGCAGCCTCT 1818
Query 1845 ACTATTCCTTCTCCACCTGCCCCTGCGCCAGTGGCTCAGCCAACTCACGTTTTTAACCAA 1904
|||||||| ||||| |||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 1819 ACTATTCCATCTCCGGCTGCGCCTGCGCCAGTTTCTCAGCCAACTCGGGTTTTTAACCAA 1878
Query 1905 ACCCCACCTCCAGAACAGACTCCCAAGAGCGGGGCTGCAAGAACCGATTCTGAGCCGGAG 1964
|||||| || | ||||||||||| ||||| |||| ||||||| |||||||||||||||||
Sbjct 1879 ACCCCAACTGCTGAACAGACTCCAAAGAGTGGGGATGCAAGATCCGATTCTGAGCCGGAG 1938
Query 1965 GTTTCGAGTTTCTGGACTACTTGTCCATACTGCTACGTGCTTTACGAGTATCCCATCATT 2024
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1939 GTTCCGAGTTTCTGGACGACTTGTCCATACTGCTACGTGCTTTACGAGTATCCCGTCATT 1998
Query 2025 TACGAGGAAAGCGTGCTTAAATGCCAAACTAAGAGCTGCAGGAGAGCTTACCAGGCAGTG 2084
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TACGAGGAAAGGGTGCTTAAATGCCAAACTAAGAGCTGCAGGAGAGCTTACCAGGCAGTG 2058
Query 2085 AAAGTTCCTTCTCCACCGCCAGTTGCCGAAGAAGATAGTTACTATTGCTGTTGGGGTTTC 2144
|| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2059 AAGGTTCCTTCTCCGCCGCCAGTTACTGAAGAAGATAGTTACTATTGCTGTTGGGGTTTC 2118
Query 2145 TATCCAATAGGATTCTCAGAAGTGGTGACTAAAATCCCAGTCACTGGTTTACATACTAAA 2204
|||||||||||||||||||||||| |||||||||||||||| |||||||| | |||
Sbjct 2119 TATCCAATAGGATTCTCAGAAGTG---ACTAAAATCCCAGTCAGTGGTTTACC--C-AAA 2172
Query 2205 ATCCCAGTGAGTGATTTACCCAAATCAGCACCCAAAAAACCATCTCCAAAGGTATACTAT 2264
|| || | |||||| | | | |||||||||||||| ||||||
Sbjct 2173 -TC--AGC-A--------CCCAAA--A--A---A-----CCATCTCCAAAGGTCTACTAT 2208
Query 2265 TATGACGACGAAGAAGAAGATGATGATTCATACATTGGTTCTGATCCTAGTGAGGACGAC 2324
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 2209 TATGACGACGAAGAAGAAGATGATGATTCATACATAGATTCTGATCCTAGTGAGGATGAT 2268
Query 2325 GACGATGATGACTGGCTGATGAATGGTACAAAAAGGAGGAAGAATGTGAAGCAGAGTAAA 2384
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2269 GACGACGATGACTGGCTGATGAATGGTACAAAAAGAAGGAAGAATGTGAAGCAAAGTAAA 2328
Query 2385 GCTAAAGCAACAACCAAACCAAAACGTCAAAAAGTAATTGAGGTTGATTGAGTAAAATCA 2444
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2329 GCTAAAGCATCAACCAAACCAAAACGTCAAAAAGTAATCGAGGTTGATTGAGTAAA---- 2384
Query 2445 GTCGGGTAGGGAACAGAAAAAGAACAACTTCAGTAAGGCTCTCTCTGTTCTTCATTTCTG 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 GTCGGGTAGGGAACAGAAAAAGAACAACTTCAGTAAGGCTCTCTCTGTTCTTCATTTCTG 2444
Query 2505 GCTCTGTTGTTGTATTTTTAGTTGTAGTAGTTTCTGTTTATGTAGTGTA 2553
|||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 2445 GCTCTGTTGTTGTATTTT-AGTTGCAGTAGTTTCTCTTTATGTAGTGTA 2492
Score = 128 bits (69), Expect = 2e-28
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 2634 TTCGGGTTAAGTTTAGAAGTAGTGGCTGTAACTTGTAATGTTTTGGTGCCTCTTTTTGGA 2693
||| |||||||||||| || | ||||||||||||||||||||||||| |||| |||||||
Sbjct 2525 TTC-GGTTAAGTTTAGTAGCAATGGCTGTAACTTGTAATGTTTTGGTACCTCATTTTGGA 2583
Query 2694 TTAATGTAGTTTCTGGAAAAACTTGCAGAAG 2724
||||||||||||||||||||||||| |||||
Sbjct 2584 TTAATGTAGTTTCTGGAAAAACTTGGAGAAG 2614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262654195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5