BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62975.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475056 jgi|Araly1|475056|fgenesh2_kg.2__186__AT1G62975.1 1343 0.0
> Ahg475056 jgi|Araly1|475056|fgenesh2_kg.2__186__AT1G62975.1
Length=1048
Score = 1343 bits (727), Expect = 0.0
Identities = 981/1094 (90%), Gaps = 55/1094 (5%)
Strand=Plus/Plus
Query 1 CTACAAGAAAAATCAAACCAAATTAAAAGTACTCATAGATATCAAATTCCAATGGATTGT 60
|||||| |||||||||||| | ||||||| ||||||||||||||||| |||||||| |
Sbjct 1 CTACAACAAAAATCAAACC--A--AAAAGTAGTCATAGATATCAAATTCTAATGGATTTT 56
Query 61 GTTCCTTCATTGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 120
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GTTCATTCAATGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 116
Query 121 TTTCTTCTTTCTCCGTTTATATCATACCAAAACAATGATGTTTTCCATTCGATCACAAAC 180
||||||||||| || |||||||||||||||||||||||||||| | || |||||||||||
Sbjct 117 TTTCTTCTTTCGCCTTTTATATCATACCAAAACAATGATGTTTGCAATCCGATCACAAAC 176
Query 181 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATATAACATATGGTGCGAATGAA 240
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 177 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATA---CATATGGCGCGACTGAA 233
Query 241 GCCAACAAAAATGATGATGATCGAGAGAGCAAGAAGATGAAACATAGAGACATTGAAAGG 300
|||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||
Sbjct 234 GCCAACAAGAATGATGATGATCGAGAAAGCAAGAAGGTGAAACATAGAGACATCGAAAGG 293
Query 301 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGACTAAGAACTCTCTTGCCATTTCAA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 294 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGTCTAAGAACTCTCTTGCCATTTCAA 353
Query 361 TATATCCAGGGTAAACGCTCGACATCAGATCACATCGTGCAGGCAGTGAACTACATCAAA 420
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 354 TATATCCAGGGTAAACGCTCGACATCAGATCACATTTTCCAGGCAGTGAACTACATCAAA 413
Query 421 GACTTACAAATCAAA-ATCAAAGAACTCAACGAAAAGAGAAATCGGGTaaaaaaaGTC-A 478
|||||||||| | || |||||||||||||||||||||||||||| | | |||||| || |
Sbjct 414 GACTTACAAA-CTAAGATCAAAGAACTCAACGAAAAGAGAAATCAGATTAAAAAA-TCCA 471
Query 479 TATCGGCCACAACTACTACTCATTCAGCTATAGAGGAATGCACCAGTAGTTTATCATCAT 538
|| ||| || | | ||| | | ||||||||||||||| ||||| |||||||||
Sbjct 472 TA-CGGGG-CA-C-A--ACT-A--C---TATAGAGGAATGCACGAGTAGCTTATCATCA- 518
Query 539 CAGCAGCATCAACACTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACTGTTG 598
| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 519 -A-CA---TCAACATTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACAGTTG 573
Query 599 TGGTCACACCTTGTTTAGTTGGTGTTGAGATCATCATAAGTTGTTGTCTCGGACGAAACA 658
||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 574 TGGTCACGCCTTGTTTGGTTGGTGTTGAGATCATCTTGAGTTGTTGTCTCGGACGAAACA 633
Query 659 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGTTCAGTGTAGTTA 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGCTCAGTGTAGTTA 693
Query 719 GTTGCCTCTCAGCTAGACGGCAACAGAGATTCATGCACACCATTGTTTCGCAGGTGGAGG 778
||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 694 GTTGCCTCTCATCTAGCCGGCAACAGAGATTCATGCACACCATTGTTTCTCAGGAGGATG 753
Query 779 ATGGCAAACAGATCAATATTTTGGAGCTTAAGGATAAAATAATGACTATGTAGCCCCATG 838
|||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||| |||
Sbjct 754 ATGGCAAAAAGATCAATATATTGGATCTTAAGGATAAAATAATGAATATGTAGCC--ATG 811
Query 839 TACAAGAAGAAA-ATTAGTT-ACTATGACAAATGAAAATATTACGTGGTTTGAAATTGGA 896
|||||||||||| || |||| | ||||| ||||| ||| | | | |||||
Sbjct 812 TACAAGAAGAAATAT-AGTTGA-TATGAAAAATGCAAA-A--A---------A--TTGGA 855
Query 897 ATTTTACTGAATTTCAATGTATGCATTATTTGAGTTGTTAGATACTAAGATCATGCTATT 956
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 856 ATTTTACTGAATTTCAATGTATGTATTATTTGAGTTGTTAGATACAAAGATCATGTTATT 915
Query 957 TTAGTGTATCGGCTTACT-TCTGAGTGCTTAGA-TTAATGTTACAAACTAATGCTTGttt 1014
||||||| |||||||||| | |||||||||||| |||| |||||||||||||||||||||
Sbjct 916 TTAGTGTTTCGGCTTACTGT-TGAGTGCTTAGAGTTAAGGTTACAAACTAATGCTTGTTT 974
Query 1015 ttcattt-tttt-tttt-GTAAAATAAAGTTTGTTTTTCTTGGCATTCTAATTATGATAT 1071
||| ||| |||| |||| ||||||||| | || ||||||||||||||||||||||| |||
Sbjct 975 TTCTTTTCTTTTCTTTTTGTAAAATAATGCTTATTTTTCTTGGCATTCTAATTATGCTAT 1034
Query 1072 ACTTCATTTTAATT 1085
| ||||||||||||
Sbjct 1035 ATTTCATTTTAATT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5