BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G62975.1 Length=1085 Score E Sequences producing significant alignments: (Bits) Value Ahg475056 jgi|Araly1|475056|fgenesh2_kg.2__186__AT1G62975.1 1343 0.0 > Ahg475056 jgi|Araly1|475056|fgenesh2_kg.2__186__AT1G62975.1 Length=1048 Score = 1343 bits (727), Expect = 0.0 Identities = 981/1094 (90%), Gaps = 55/1094 (5%) Strand=Plus/Plus Query 1 CTACAAGAAAAATCAAACCAAATTAAAAGTACTCATAGATATCAAATTCCAATGGATTGT 60 |||||| |||||||||||| | ||||||| ||||||||||||||||| |||||||| | Sbjct 1 CTACAACAAAAATCAAACC--A--AAAAGTAGTCATAGATATCAAATTCTAATGGATTTT 56 Query 61 GTTCCTTCATTGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 120 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 GTTCATTCAATGTTTATGCCTGATTCAACCTACGAAGATGGATTACTATTTTCTGATTCT 116 Query 121 TTTCTTCTTTCTCCGTTTATATCATACCAAAACAATGATGTTTTCCATTCGATCACAAAC 180 ||||||||||| || |||||||||||||||||||||||||||| | || ||||||||||| Sbjct 117 TTTCTTCTTTCGCCTTTTATATCATACCAAAACAATGATGTTTGCAATCCGATCACAAAC 176 Query 181 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATATAACATATGGTGCGAATGAA 240 |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| Sbjct 177 AAAATTGGTGGAAGCAATAAGAAACGAAGTTTGTGTGATA---CATATGGCGCGACTGAA 233 Query 241 GCCAACAAAAATGATGATGATCGAGAGAGCAAGAAGATGAAACATAGAGACATTGAAAGG 300 |||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| Sbjct 234 GCCAACAAGAATGATGATGATCGAGAAAGCAAGAAGGTGAAACATAGAGACATCGAAAGG 293 Query 301 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGACTAAGAACTCTCTTGCCATTTCAA 360 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 294 CAAAGAAGACAAGAAGTTTCATCTCTTTTCAAAAGTCTAAGAACTCTCTTGCCATTTCAA 353 Query 361 TATATCCAGGGTAAACGCTCGACATCAGATCACATCGTGCAGGCAGTGAACTACATCAAA 420 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 354 TATATCCAGGGTAAACGCTCGACATCAGATCACATTTTCCAGGCAGTGAACTACATCAAA 413 Query 421 GACTTACAAATCAAA-ATCAAAGAACTCAACGAAAAGAGAAATCGGGTaaaaaaaGTC-A 478 |||||||||| | || |||||||||||||||||||||||||||| | | |||||| || | Sbjct 414 GACTTACAAA-CTAAGATCAAAGAACTCAACGAAAAGAGAAATCAGATTAAAAAA-TCCA 471 Query 479 TATCGGCCACAACTACTACTCATTCAGCTATAGAGGAATGCACCAGTAGTTTATCATCAT 538 || ||| || | | ||| | | ||||||||||||||| ||||| ||||||||| Sbjct 472 TA-CGGGG-CA-C-A--ACT-A--C---TATAGAGGAATGCACGAGTAGCTTATCATCA- 518 Query 539 CAGCAGCATCAACACTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACTGTTG 598 | || |||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 519 -A-CA---TCAACATTATCATCAAGCTGCTCATGTGTAGGAGACAAACACATTACAGTTG 573 Query 599 TGGTCACACCTTGTTTAGTTGGTGTTGAGATCATCATAAGTTGTTGTCTCGGACGAAACA 658 ||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||| Sbjct 574 TGGTCACGCCTTGTTTGGTTGGTGTTGAGATCATCTTGAGTTGTTGTCTCGGACGAAACA 633 Query 659 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGTTCAGTGTAGTTA 718 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 634 AGTCTTGTCTCTCGAGTGTTCTTCAAATGTTAGCTCAAGAACAAAGGCTCAGTGTAGTTA 693 Query 719 GTTGCCTCTCAGCTAGACGGCAACAGAGATTCATGCACACCATTGTTTCGCAGGTGGAGG 778 ||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||| | Sbjct 694 GTTGCCTCTCATCTAGCCGGCAACAGAGATTCATGCACACCATTGTTTCTCAGGAGGATG 753 Query 779 ATGGCAAACAGATCAATATTTTGGAGCTTAAGGATAAAATAATGACTATGTAGCCCCATG 838 |||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||| ||| Sbjct 754 ATGGCAAAAAGATCAATATATTGGATCTTAAGGATAAAATAATGAATATGTAGCC--ATG 811 Query 839 TACAAGAAGAAA-ATTAGTT-ACTATGACAAATGAAAATATTACGTGGTTTGAAATTGGA 896 |||||||||||| || |||| | ||||| ||||| ||| | | | ||||| Sbjct 812 TACAAGAAGAAATAT-AGTTGA-TATGAAAAATGCAAA-A--A---------A--TTGGA 855 Query 897 ATTTTACTGAATTTCAATGTATGCATTATTTGAGTTGTTAGATACTAAGATCATGCTATT 956 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| Sbjct 856 ATTTTACTGAATTTCAATGTATGTATTATTTGAGTTGTTAGATACAAAGATCATGTTATT 915 Query 957 TTAGTGTATCGGCTTACT-TCTGAGTGCTTAGA-TTAATGTTACAAACTAATGCTTGttt 1014 ||||||| |||||||||| | |||||||||||| |||| ||||||||||||||||||||| Sbjct 916 TTAGTGTTTCGGCTTACTGT-TGAGTGCTTAGAGTTAAGGTTACAAACTAATGCTTGTTT 974 Query 1015 ttcattt-tttt-tttt-GTAAAATAAAGTTTGTTTTTCTTGGCATTCTAATTATGATAT 1071 ||| ||| |||| |||| ||||||||| | || ||||||||||||||||||||||| ||| Sbjct 975 TTCTTTTCTTTTCTTTTTGTAAAATAATGCTTATTTTTCTTGGCATTCTAATTATGCTAT 1034 Query 1072 ACTTCATTTTAATT 1085 | |||||||||||| Sbjct 1035 ATTTCATTTTAATT 1048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40410292020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5