BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62980.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924690 jgi|Araly1|924690|scaffold_200251.1 1279 0.0
> Ahg924690 jgi|Araly1|924690|scaffold_200251.1
Length=819
Score = 1279 bits (692), Expect = 0.0
Identities = 777/819 (95%), Gaps = 2/819 (0%)
Strand=Plus/Plus
Query 31 CCCTCAAGAAAACAGAGTAAAAATGGATCAAAATTTGTATCGCAAGTGCCTGGTTATTTT 90
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CCCTCAAGAAAACAGAGTAAAAATGGATCAAAATTTGTATCGCAAGTGCTTGGTTATTTT 60
Query 91 ATCGATGATGGCAATGATCGGCACATCAATGGCTACATATGCCGGGACCCCATGGCGTAC 150
||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 61 ATCAATGATGGCACTGATCGGCACATCAATGGCGGCATATGCGGGGACCCCATGGCGTAC 120
Query 151 AGCCTCAGCCACTTTTTACGGTGACGACACCGGCAGCGCAACTATGGGTGGGGCTTGTGG 210
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 121 GGCCTCAGCCACTTTTTACGGTGATGAGACCGGCAGCGCAACTATGGGTGGGGCTTGTGG 180
Query 211 CTATGGTAACATGTATGACAGCGGCTACGGGGTAGCCACGACTGCGCTGAGCACAGCCCT 270
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 181 CTATGGTAACATGTGGGACAGCGGCTACGGCGTAGCCACGACTGCTCTGAGCACAGCTCT 240
Query 271 GTTCAACGAGGGTTATGCATGCGGTCAATGTTTCCAGTTAAAGTGTGTGTCGTCGCCTAA 330
||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 241 GTTCAACGACGGTTATGCATGCGGTCAATGTTTCCAGATAAGGTGTGTGTCATCGCCTAA 300
Query 331 CTGCTACTACGGGTCACCAGCCACCGTGGTAACTGCAACCAACATATGTCCACCAAATTA 390
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 301 CTGCTACTACGGTTCACCAGCCACCGTGGTGACTGCCACCAACATATGTCCACCAAATTA 360
Query 391 TGGCCAAGCATCCAACAATGGTGGATGGTGTAATCCGCCACGAGTCCATTTTGATTTGAC 450
||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 361 TGGCCAAGCTTCCAACAATGGTGGATGGTGTAATCCACCACAAGTCCATTTTGATTTGGC 420
Query 451 TAAACCAGCTTTTATGAAGATCGCTAACTGGAAGGCTGGTATCATCCCCGTCTCATATCG 510
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 421 TAAACCAGCTTTCATGAAGATCGCTAATTGGAAGGCTGGTATCATCCCCCTCTCATACCG 480
Query 511 CAGAGTGGCATGTAAGAAG-ATCGGAGGAATAAGGTTCAAATTTGAAGGAAATGGATATT 569
|||||||||||||||| || | ||||||||||||||| ||||||||||||||||| ||||
Sbjct 481 CAGAGTGGCATGTAAG-AGAACCGGAGGAATAAGGTTTAAATTTGAAGGAAATGGGTATT 539
Query 570 GGCTACTTGTGTACGTGATGAACGTAGGTGGTCCAGGTGACATCAAGACCATGGCCGTTA 629
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 540 GGCTACTTGTGTACGTGATGAACGTAGGTGGTGCAGGTGACATCAAGACCATGGCCGTGA 599
Query 630 AAGGTAGCCGCACAGGGTGGATCAACATGAGCCATAACTGGGGAGCTTCGTACCAAGCCT 689
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 AAGGTAGCCGCACAGGCTGGATCAACATGAGCCATAATTGGGGAGCTTCGTACCAAGCCT 659
Query 690 TTTCTTCTCTCTACGGTCAGTCTCTCTCGTTCCGGCTCACCTCTTACACCACTCGTCAGA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTCTTCTCTCTACGGTCAGTCTCTCTCGTTCCGGCTCACCTCTTACACCACTCGTCAGA 719
Query 750 CCATTTACGCTTATAATGCTGCTCCGGCAAGCTGGAGCGCGGGCAAGACCTACCAGAGCA 809
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 720 CCATTTACGCTTATAATGCTGCTCCGGCTAGCTGGAGCGCCGGCAAGACCTACCAGAGCA 779
Query 810 AGGCTAATTTTAACTAATTTAGGTCATATTCAATTCCGA 848
|||||||||||| || |||||||||||||||||||||||
Sbjct 780 AGGCTAATTTTAGCTGATTTAGGTCATATTCAATTCCGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5