BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62981.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475054 jgi|Araly1|475054|fgenesh2_kg.2__184__AT1G62981.1 1755 0.0
> Ahg475054 jgi|Araly1|475054|fgenesh2_kg.2__184__AT1G62981.1
Length=1193
Score = 1755 bits (950), Expect = 0.0
Identities = 1117/1197 (93%), Gaps = 13/1197 (1%)
Strand=Plus/Plus
Query 8 AAAAAGAAAAGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCATCGCA 67
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 AAAAA-AAAAGAGAAACTCATTTCTCATGATCGACTCTTCCTCTACACTTCTTCTTCTCA 59
Query 68 TCTTCTCATCACCTCAACATTCAAACGTGAACAATTACTCCACCAATATCGAAAATGGTA 127
||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TCTTCTCATCA---CAACACTCAAACGTGAACAATAACTCCACCAATATCGAAAATGGTA 116
Query 128 ACACTAACACTCTATCCTCCCTCTATTCAACTAATAATAATCGTATTATTCCTCTTCCTT 187
|||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 117 ACACCAACACTCTATCTTCCCTTTCTTCAACTAATAATAATCGTATTATTCCTCTTCCTT 176
Query 188 CCCTCTCATCTAGAGGGTTCGA------CT--T-CTACTACTACTACTCAAGAAGCTCTC 238
|| ||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 177 CCTTCTCATCTAGAGGGTTCGACTTCTTCTACTACTACTACTACTACTCAAGAAGCTCTC 236
Query 239 AATGAATCCTCAAGGCTTCTTGATCTCATTCTAAGAGATTACACTCTCAACTTCTTCAAG 298
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 237 AACGAATCCTCAAGGCTTCTTGATCTCATTATAAGAGACTACACTCTCAACTTCTTCAAG 296
Query 299 AACCAACATTATTCTATCAAGACCGGTGTTATTCGGCGTGTTCATCTCCCGTCTGACTAC 358
||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 297 AACCAACGTTATTCAATCAAGACCGGTGTTCCACGGCGTGTTCATCTCCCGTCTAACTAC 356
Query 359 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGACGATACGGAGCA 418
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 TCCGGCATAAAACTTGACGCCGTTAGGTTCCGGTGTGGGAGTCTCCGGCGATACGGAGCT 416
Query 419 AAAATCGAAGAATTCAATATTGGCGTTGGAGCTATTCTTGAGCCGTGTGGTGAACGTCTT 478
|||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 417 CAAATCGAAGAGTTCCATATTGGCGTTGGAGCAATTCTTGAGCCGTGTGGTGAGCGTCTT 476
Query 479 TTGGTTGTGAGACAAAGCTTGGGATCAAAGTGGTCCGATATATATTACAAAAACTATGAT 538
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 TTGGTTGTGAAACAAAGCCTGGGATCAAACTGGTCCGATATATATTACAAAAACTATGAT 536
Query 539 CTCTCCGGTTATAGACTTGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCATTAAAC 598
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 537 CTCTCCGGTTATAAACTCGTGTCTCCGGTTCTAGGGCTCTTAGCTTATAACGCGTTAAAT 596
Query 599 GATGTTGTTTTAGGGAATAACGTGAGTAGCTCTTATCAGATAAGTCTCCTCCTAGCCCGT 658
|| || |||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||
Sbjct 597 GACGTAGTTTTAGGGAATAATGTGAGCAGCTCTTATCAGATAAGTCTCCTCCTTGCCGGT 656
Query 659 ACTAAAGATCCATCCAACGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 718
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTAAAGATCCATCGACCGTTGATTTTGGGAACGTTTCTGGACCGTCGGTGGTAGAGAGA 716
Query 719 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAACTTGATGGAAAAGTAACGCTTGCC 778
||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||
Sbjct 717 ACGTTCTTGAATAAGCCAATGTGCGCTACTTTTGAGCTCGACGGAAAAGTAACGTTTGCC 776
Query 779 GCCGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAATGGACATTTTGGTTTAGTGGTG 838
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 GGAGAAGTGAAGCCGTTTGTGTGCGCCGTTAAAACCAACGGACATTTTGGTTTAGTGGTA 836
Query 839 ACGGATGATCCAAAATCGAATGGTGGAGGAGAAAAGGAGATGAAGAAGGAGAAGATCGGA 898
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 837 ACGGATGATCCAAAATCGAATGGTGGAGGCGAGAAGGAGATGAAGAAGGAGAAGATCGGA 896
Query 899 CGGTGGAGGAAGGTTGTTGGAGGGCTTGTTGGGTCTGTGACGGTGGGGGTGGTGCTTTTA 958
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGGTGGAGAAAGGTTGTTGGAGGGCTTGTTGGGTCTGTGACGGTGGGGGTGGTGCTTTTA 956
Query 959 GGGCTGGTGGTGGCGGCTGCTGTAGTGACGGCaaagaaaaggagaagaagggcaaaaagg 1018
|||||||||||||||||||| || ||| ||| ||||| ||| | ||||||| |||||||
Sbjct 957 GGGCTGGTGGTGGCGGCTGCGGTGGTGGTGGCGAAGAAGAGGCGGAGAAGGGAAAAAAGG 1016
Query 1019 gaagaaatggagagaaaagcttatgaagaagaagCTTTTAGAGTAGTGTCAATGGTGGGG 1078
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 GAAGAAATGGAGAGAAAAGCTTATGAAGAAGAAGCTCTTAGAGTAGTGTCAATGGTGGGG 1076
Query 1079 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCAGGTTTCATGGAATATGAG 1138
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1077 CATTCTAGGGCTTTCGTTGCTTCTGCTACAAGGACTTCTCCACGTTTCATGGAACATGAG 1136
Query 1139 TTTGTTCCTAATTAATTAATTATATTTACGTGTGATTCCGTTTTTGTGGATTGtttt 1195
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 1137 TTTGTTCCTAATTAATTAAATATATTTACGTGTTATTCCGTTTTTGTGGATTTTTTT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5