BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G62990.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475053 jgi|Araly1|475053|fgenesh2_kg.2__183__AT1G62990.1 1672 0.0
Ahg328525 jgi|Araly1|328525|fgenesh1_pm.C_scaffold_7000752 167 2e-40
> Ahg475053 jgi|Araly1|475053|fgenesh2_kg.2__183__AT1G62990.1
Length=1273
Score = 1672 bits (905), Expect = 0.0
Identities = 1199/1327 (90%), Gaps = 75/1327 (6%)
Strand=Plus/Plus
Query 1 ctctctctctctctTTTTCTAATCATACGAAC---ACAATCTGCTTCAAGAATTAGGGTT 57
|||||||||||||||| || ||||||| |||| | |||| ||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTTTCTCCAATCATATGAACAAAATAATCGGCTTCAAGAATTAGGGTT 60
Query 58 TTGATCAGACACAAAAA-GTATCTCTCTCCGGTCTTGTGTCAAGGTTATGCAAGAAGCGG 116
|||||||| |||||||| ||| ||||| | || | | ||||||||||||||
Sbjct 61 TTGATCAGTCACAAAAACGTA--TCTCT-C--TC------C---G-TATGCAAGAAGCGG 105
Query 117 CACTAGGTATGATGGGAGCCACCGTAGGCGGAGACGGAGACACCGCGGTC-GTGGCGGAG 175
| ||||||||||| ||||||||||||||||||||||||||| || ||| | |||||||||
Sbjct 106 CGCTAGGTATGATCGGAGCCACCGTAGGCGGAGACGGAGACGCCCCGG-CGGTGGCGGAG 164
Query 176 CAGAATAGACAGTTGAAAGGTGAGATAGCGACACATCCGATGTATGAGCAATTATTAGCC 235
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 165 CAGAATAGACAGATGAAAGGTGAGATAGCGACACATCCGATGTATGAGCAGTTATTGGCC 224
Query 236 GCACACGTGGCGTGTTTAAGAGTAGCTACTCCAATAGATCAACTTCCGATCATTGAAGCT 295
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 225 GCACACGTGGCGTGTCTAAGAGTAGCTACTCCGATAGATCAACTTCCGATCATTGAAGCT 284
Query 296 CAGCTTTCTCAATCTCATCATCTTCTCCGTTCTTACGCTTCCACGGCCGTTGGATA---C 352
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 285 CAGCTTTCTCAATCTCATCATCTTCTTCGTTCTTACGCTTCCACCGCCGTTGGATACTCC 344
Query 353 CATCATGATCGTCACGAGCTCGATAATTTCTTGGCACAATATGTAATGGTGTTGTGTAGC 412
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 345 CACCATGATCG---CGAGCTCGATAATTTCTTGGCACAATATATAATGGTGTTGTGTAGC 401
Query 413 TTCAAAGAACAGCTGCAACAGCACGTGAGGGTTCATGCCGTCGAAGCTGTTATGGCTTGC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTCAAAGAACAGCTGCAACAGCACGTGAGGGTTCATGCCGTCGAAGCTGTTATGGCTTGC 461
Query 473 CGTGAAATTGAGAACAACCTTCATTCTCTTACAGGAGCAACTTTAGGAGAAGGGTCGGGT 532
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 462 CGTGAAATTGAGAACAATCTTCATTCTCTTACAGGAGCAACGTTAGGAGAAGGGTCAGGT 521
Query 533 GCGACTATGTCGGAGGATGAGGATGATCTTCCGATGGATTTCTCGTCAGATAATTCCGGC 592
||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct 522 GCGACTATGTCGGAGGATGAGGATGATATTCAGATGGACTTCTCGTCTGATAATTCCGGC 581
Query 593 GTTGATTTTAGCGGCGGCCACGATATGACGGGATTTGGTCCGTTGCTACCGACTGAATCG 652
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 582 GTTGATTTTAGCGGCGGCCACGATATGACGGGATTTGGACCGTTGCTACCGACTGAATCG 641
Query 653 GAAAGATCCCTTATGGAAAGAGTCAGACAAGAACTCAAACTAGAACTCAAACAGGGTTTT 712
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 642 GAAAGATCTCTTATGGAAAGAGTCAGACAAGAACTTAAACTCGAACTCAAACAGGGTTTT 701
Query 713 AAATCGAGAATCGAAGATGTAAGAGAAGAGATAATGAGGAAGAGAAGGGCTGGGAAATTG 772
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 702 AAATCAAGAATTGAAGATGTAAGAGAAGAGATAATGAGGAAAAGAAGGGCTGGGAAATTG 761
Query 773 CCAGGAGACACAACTACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAATGGCCTTAC 832
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 762 CCAGGAGACACAACTACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAGTGGCCTTAC 821
Query 833 CCTACGGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATC 892
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CCTACTGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATC 881
Query 893 AACAATTGGTTCATTAACCAACGCAAGAGGAATTGGCACAACAACTCTCACTCCCTCACT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 882 AACAATTGGTTCATTAACCAACGCAAGAGGAATTGGCACAACAACTCTCACTCGCTCACT 941
Query 953 TCCTTGAAGTCCAAGCGCAAACACTAATCTCTTCTTACTATATTAGTTACTACCTCTACA 1012
|||||||||||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 942 TCCTTGAAGTCCAAGCGCAAACACTAATCTCTTCTTACTATATT--T--C-A--T--AC- 991
Query 1013 TATATTCATACTAATTACACTGCTAAGA-CATGCATGATACATACGTAATTCATGTTACT 1071
|| ||| | | | | | || ||| | ||||||||||| ||| |||||||||||| |
Sbjct 992 TA-ATT-A--C-A-T--CGCT--TAA-ATCATGCATGATATATATGTAATTCATGTTGTT 1040
Query 1072 GATAATAACGAGGTGTGATCATTAATATCATGTACTTACTTAGCTTATTAGATCCACCGA 1131
||||| ||||||||||||||||||||||| |||||| ||||| |||| | |
Sbjct 1041 GATAAAAACGAGGTGTGATCATTAATATCTTGTACT-ACTTA-CTTA---GCT------- 1088
Query 1132 CTACTATATGATTTGTGCGTTGCGTGATTACTGGTTGTTACTAGATTGTAATTCATTTT- 1190
|| |||||||||||||| ||| |||||||||| || ||||||||||||||||||||||
Sbjct 1089 -TA-TATATGATTTGTGCTTTGAGTGATTACTGTTTATTACTAGATTGTAATTCATTTTT 1146
Query 1191 --GTTTGT-ATTGTGCATTCAAATTTATCTTTTTGGTA--A---GAACAC--TGATTTTG 1240
|||| | ||||||||||||||| ||| ||||||||| | |||||| | ||||||
Sbjct 1147 TTGTTTTTTATTGTGCATTCAAATATATTTTTTTGGTACGAATTGAACACCCTAATTTTG 1206
Query 1241 TAACGTGTTTTCCGTGGATGACTAGACCATCATTTGGAAATATA-AAGTAATGATGCCGA 1299
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1207 TAACGTGTTTTCCGTGGTTGACTAGACCATCATTTGGAAATATATAAGTAATGATGCCGA 1266
Query 1300 CAAAAAA 1306
|||||||
Sbjct 1267 CAAAAAA 1273
> Ahg328525 jgi|Araly1|328525|fgenesh1_pm.C_scaffold_7000752
Length=1140
Score = 167 bits (90), Expect = 2e-40
Identities = 223/285 (78%), Gaps = 18/285 (6%)
Strand=Plus/Plus
Query 665 ATGGAAAGAGT-CAGACAAGAACTCAAACTA-GAACTCAAACAGGGTTTTAAATCGAG-A 721
|||||| | || ||| ||||||| || | | || || ||||||||||| ||| ||| |
Sbjct 823 ATGGAACGTGTGAAGA-AAGAACTGAAGC-ATGAGCTTAAACAGGGTTTCAAA--GAGAA 878
Query 722 -ATCGAAGATGTAAGAGAAGAGATAATGAGGAAGAGAAGGGCTGGGAAA-TTGCCAGGAG 779
|| | || ||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 879 GATTGTGGACATAAGAGAAGAGATAATGAGGAAGAGAAGGGC-GGGAAAGTTGCCGGGAG 937
Query 780 ACACAACTACTGT-CTTGAAAAATTGGTGGC-AACAACATT-GCAAATGGCCTTACCCTA 836
| || ||| |||| || ||| | ||||||| ||| || | | |||||||| ||||| |
Sbjct 938 ATACGACTTCTGTACTC-AAAGAGTGGTGGCGAACT-CACTCG-AAATGGCCATACCCAA 994
Query 837 CGGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATCAACA 896
| || || || ||||||||| |||| | || || || ||||||||||| || |||||||
Sbjct 995 CTGAGGAAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACA 1054
Query 897 ATTGGTTCATTAACCA-ACGCAAGAGGAATTGGCACAACAACTCT 940
|||||||||| ||||| | | || || || ||| ||| |||||||
Sbjct 1055 ATTGGTTCATCAACCAGAGGAAA-AGAAACTGGAACAGCAACTCT 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5