BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63000.1
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924687 jgi|Araly1|924687|scaffold_200248.1 1559 0.0
> Ahg924687 jgi|Araly1|924687|scaffold_200248.1
Length=956
Score = 1559 bits (844), Expect = 0.0
Identities = 913/946 (97%), Gaps = 6/946 (1%)
Strand=Plus/Plus
Query 82 CGGCGAAAACTTTCCGATCACCGACaaaaaaaaaaaaTGGTTGCAGACGCAAACGGTTCA 141
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1 CGGCGAAAATTTTCCGATCACCGAC---AAAAAAAAATGGTTGCAGACGCAAACGG---A 54
Query 142 TCATCAAGCTCATTTAACTTCCTAATCTACGGTAAAACCGGATGGATCGGTGGTTTACTC 201
||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 55 TCATCAACCTCCTTCAACTTCCTAATCTACGGTCGAACCGGATGGATCGGTGGTTTACTC 114
Query 202 GGTAAACTCTGCGAAGCTCAAGGAATCACTTACACTTACGGCTCCGGTCGTCTTCAAGAT 261
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 115 GGTAAACTCTGCGAATCTCAAGGAATCTCTTACACTTACGGCTCCGGTCGTCTTCAAGAT 174
Query 262 CGTCAATCGATCGTCGCCGACATCGAATCCGTGAAACCTAGCCACGTGTTCAACGCTGCT 321
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 175 CGTCAATCTATCATCGCCGACATCGAATCTGTGAAACCTAGCCACGTGTTCAACGCCGCT 234
Query 322 GGAGTCACCGGTCGTCCTAATGTTGATTGGTGCGAATCTCACAAAGTTGAGACGATTCGT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GGAGTCACCGGTCGTCCTAATGTTGATTGGTGCGAATCTCACAAAGTTGAGACGATTCGT 294
Query 382 ACTAATGTCGCCGGAACCCTAACTCTCGCTGACATTTGCAGAGAGAAAGGACTTGTTCTG 441
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 ACTAATGTCGCCGGAACCCTAACTCTCGCCGACATTTGCAGAGAGAAAGGACTTGTTCTG 354
Query 442 ATCAATTACGCTACGGGTTGTATATTTGAGTATGATTCGGGTCATCCTCTCGGGTCGGGT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCAATTACGCTACGGGTTGTATATTTGAGTATGATTCGGGTCATCCTCTCGGGTCGGGT 414
Query 502 ATTGGATTCAAGGAGGAGGATACTCCTAATTTCACCGGATCTTTCTACTCTAAAACCAAA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTGGATTCAAGGAGGAGGATACTCCTAATTTCACCGGATCTTTCTACTCTAAAACCAAA 474
Query 562 GCTATGGTGGAGGAGCTGCTCAAGAACTATGAAAATGTATGCACGCTAAGAGTGCGAATG 621
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 GCTATGGTGGAGGAGCTGCTCAAGAACTATGAAAATGTGTGCACGCTAAGAGTGCGAATG 534
Query 622 CCGATTTCATCGGATCTAACAAACCCGAGAAACTTCATCACGAAGATTGCTCGGTATGAG 681
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCGATTTCTTCGGATCTAACAAACCCGAGAAACTTCATCACGAAGATTGCTCGGTATGAG 594
Query 682 AAAGTTGTGGACATCCCAAACTCGATGACAATCCTCGATGAGCTTCTCCCGATATCAATC 741
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 595 AAAGTTGTGGATATCCCAAACTCGATGACTATTCTCGATGAGCTTCTCCCGATATCAATC 654
Query 742 GAAATGGCGAAGAGGAACTTAACCGGGATCTACAATTTCACTAACCCGGGTGTTGTGAGC 801
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 GAAATGGCAAAGAGGAACTTAACCGGGATCTACAATTTCACTAACCCGGGGGTTGTGAGC 714
Query 802 CACAACGAGATCTTGGAGATGTACAGAGACTACATTGACCCGAGTTTTACTTGGAAGAAC 861
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CATAATGAGATCTTGGAGATGTACAGAGACTACATTGACCCGAGTTTTACTTGGAAGAAC 774
Query 862 TTCACATTGGAGGAACAAGCTAAAGTGATTGTGGCGCCAAGGAGTAACAATGAGCTTGAT 921
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 775 TTCACATTGGAGGAACAAGCTAAAGTGATTGTGGCTCCAAGGAGTAACAATGAGCTCGAT 834
Query 922 GCAACTAAGTTGAAGACTGAGTTCCCTGAGTTGATGTCTATCAAAGAGTCTCTGATCAAG 981
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCGACTAAGTTGAAGACTGAGTTCCCTGAGTTGATGTCTATCAAAGAGTCTCTGATCAAG 894
Query 982 TTCGTGTTTGAGCCCAACAAGAAGACTGAAGTTAAAGCTTGAAATG 1027
|||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 895 TTCGTGTTTGAGCCGAACAAGAAGACTGAGGTTAAAGCTTGAAATG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47729892084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5