BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63010.5
Length=2934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475048 jgi|Araly1|475048|fgenesh2_kg.2__178__AT1G63010.1 3374 0.0
Ahg945819 jgi|Araly1|945819|scaffold_702048.1 483 4e-135
Ahg489997 jgi|Araly1|489997|fgenesh2_kg.6__3131__AT4G11810.1 115 2e-24
> Ahg475048 jgi|Araly1|475048|fgenesh2_kg.2__178__AT1G63010.1
Length=2508
Score = 3374 bits (1827), Expect = 0.0
Identities = 2083/2201 (95%), Gaps = 40/2201 (2%)
Strand=Plus/Plus
Query 595 CAGATTGAGACAACTGTCCTTTTCATGTTGGAACAACAAGGGTTGCTTTCAGGGCGATTA 654
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 329 CAGATTGAGACAACTGTCCTTTTCATGTTGGAACAACAAGGGTTGCTTGCAGGGCGATTA 388
Query 655 GCCAAATTGAGGGAATCTCATGATGCTATACTTGAGCAGCCTGACATATCAAGAATTTTC 714
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 389 GCCAAATTGAGGGAAACGCATGATGCTATACTTGAGCAGCCTGACATATCAAGAATTGTC 448
Query 715 GAGCTACGTGAAGCATACAGAGATGTTGGACGAGACCTTCTTCAGCTCCTGAAATTCGTT 774
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 449 GAGCTACGAGAAGCATACAGAGACGTTGGACGAGACCTTCTCCAGCTCCTGAAATTCGTT 508
Query 775 GAGTTGAACGCCATTGGTCTGCGCAAGATACTTAAGAAATTCGACAAAAGGTTTGGATAT 834
|||||||||||| |||||||||||||||||||||| |||||||||||| | ||||| |||
Sbjct 509 GAGTTGAACGCCGTTGGTCTGCGCAAGATACTTAAAAAATTCGACAAACGTTTTGGTTAT 568
Query 835 AGATTCGCTGATTATTACGTGAAGACCCGCGCTAATCACCCTTACTCTCAGCTTCAACAA 894
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 569 AGATTCGCTGATTATTACGTGAAGACACGCGCTAATCATCCTTACTCTCAGCTTCAACAA 628
Query 895 GTTTTTAAGCATGTGGGTGTTGGAGCTGTTGTTGGAGCAATTTCCCGCAATCTTCATGAG 954
|| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 629 GTCTTTAAGCATGTGGGTGTAGGAGCTGTTGTTGGGGCAATTTCTCGCAATCTTCATGAG 688
Query 955 CTTCAAGAAAATGAAGGAAGCTTTTATTCAATTTATGACCAACCCGTTCTTCCGGC-TCA 1013
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 689 CTTCAAGAAAATGAAGGAAGCTTTTATTCAATTTATGACCAACCTGTTCTTCC-GCTTCA 747
Query 1014 GGATCCAGTGGTTGAGGCAATAAATAAC-GCGGTGGACAAGTTAACCTTCTCGACGAATT 1072
||||||||||||||| || ||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 748 GGATCCAGTGGTTGAAGCCATAAA-AACTGCGGTGGAAAAGTTAACCTTCTCGACGAATT 806
Query 1073 TCCTCAACTTCTTGGCACAACATGCTCTTATCATGCAAGATGATTTGGTGACTCCTTCAG 1132
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TCCTCAACTTCTTGGCACAGCATGCTCTTATCATGCAAGATGATTTGGTGACTCCTTCAG 866
Query 1133 AGGATACAATCGATGAGCGGTCTTACCATTTTAATTCGTTACTCCTGAATCTAGGAAACA 1192
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 867 AGGATACAATCGATGAGCGGACTTACCATTTTAATTCATTACTCCTGAATCTAGGAAACA 926
Query 1193 CATTTTTGTACATGGTCAACACTTATATCATCGTCCCTACAGCGGATGACTATTCGATGA 1252
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 927 CATTTTTGTACATGGTCAACACTTATATCATCGTTCCGACAGCGGACGACTATTCGATGA 986
Query 1253 GCCTTGGAGCTGCAGCAACGGTTTGTGGTGTTGTCATCGGATCTATGGCTGTGGCTCAAG 1312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 987 GCCTTGGAGCTGCAGCAACGGTTTGTGGTGTTGTCATTGGATCTATGGCTGTGGCTCAAG 1046
Query 1313 TATTTTCATCGGTTTATTTCAGCGCATGGTCCAACAAATCTTACTTCAAACCTCTTGTGT 1372
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 TATTCTCATCGGTTTATTTCAGCGCATGGTCCAACAAATCTTACTTCAAACCTCTTGTGT 1106
Query 1373 TTAGCAGCATCGCACTCTTTATCGGAAATTTGATGTATGCGTTGGCATATGATGCCAATT 1432
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1107 TTAGCAGCATCGCACTCTTTATCGGAAACTTGATGTATGCGTTGGCTTATGATGCCAATT 1166
Query 1433 CCATAGCGCTTCTTTTACTCGGCCGTGTCTGTTGTGGGTTGGGATCAGCAAGAGCTGTTA 1492
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 CCATAGCGCTTCTATTACTCGGCCGTGTCTGTTGTGGGTTGGGATCAGCAAGAGCTGTTA 1226
Query 1493 ACCGGAGATATATCAGCGATTGTGTGCCTTTGAGAATCCGAATGCAGGCATCGGCGGGTT 1552
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1227 ACCGGAGATATATCAGCGATTGTGTGCCTTTGAGAATCCGAATGCAGGCATCAGCGGGTT 1286
Query 1553 TTGTGAGTGCAAGTGCTCTTGGAATGGCTTGTGGCCCTGCGCTTGCCGGTTTACTCCAAA 1612
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1287 TTGTGAGTGCAAGTGCTCTTGGAATGGCTTGTGGTCCTGCGCTTGCCGGTTTACTCCAAA 1346
Query 1613 TCAAATTCAAGTTTTACAAGTTTACATTTAACCAATCTACTTTGCCGGGATGGGTTATGG 1672
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1347 TCAAATTCAAGTTTTACAAGTTTACATTTAACCAATCTACTTTGCCGGGGTGGGTTATGG 1406
Query 1673 CTGTGGCTTGGCTGTTCTATTTGGTATGGCTATGCATTTCATTCAGAGAGCCGTTGCGTG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTGTGGCTTGGCTGTTCTATTTGGTATGGCTATGCATTTCATTCAGAGAGCCGTTGCGTG 1466
Query 1733 ACACAGAGGATGGAGaaaaaaaCAATCGAAATGAAACAACATCAGCGACAGATAGAGTAG 1792
|||||||||| | |||| | | ||||| |||||||||||||||| ||||||||||||||
Sbjct 1467 ACACAGAGGAAGAAGAAGATACCAATCCAAATGAAACAACATCAATGACAGATAGAGTAG 1526
Query 1793 AAAGTAGCAGAGTCGAGGAAGGTCTTCGATTGCCGTTGCTGATCACTTCAGGAATCAAGC 1852
||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 1527 AAAGTAGCAGAGTCGAGGAAGGTCTTCGAATGCCCTTGCTGATTACTTCAGGAATCAAGC 1586
Query 1853 CAGAAGATGAAGAGGAATGCGATGAAAGTGAAGAATCCCCAGAAGATTCTCACAAACCTG 1912
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1587 CAGAAGATGAAGAGGAATGTGATGAAAGTGAAGAATCTCCAGAAGATTCTCACAAACCTG 1646
Query 1913 CAAATTCTTTCATAGAAGCATACCGACTCCTTACTCCATCTGTTAAGGTTCAACTGTTGA 1972
|||| ||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1647 CAAACTCTTTCAGATCAGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGA 1706
Query 1973 TCTACTTCATGCTCAAATATTCGATGGAAATATTACTGTCAGAATCAAGTGTCATTACTT 2032
|||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||
Sbjct 1707 TCTACTTCATGCTCAAATATGCTATGGAGATATTACTGTCGGAATCTAGTGTCATTACTT 1766
Query 2033 CATACTACTTTAGTTGGACAACAAGCTCTGTTGCCATCTTCCTGGCCTGCCTTGGCCTCA 2092
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1767 CATACTACTTTAGTTGGACAACAAGCTCCGTTGCCATCTTCCTGGCCTGCCTTGGCCTCA 1826
Query 2093 CGGTGCTACCAATCAACATTTTGGTCGGAAGTTACATCAGTAATATGTTTGAAGACAGGC 2152
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 CTGTGCTACCAATCAACATTTTGGTCGGAAGTTACATCAGTAATATGTTTGAAGACAGGC 1886
Query 2153 AAATCCTTCTAACATCTGAGATCATCGTCTTCCTTGGGATTCTCTTCAGTTTCAATTTGT 2212
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1887 AAATCCTTCTAACATCTGAGATCATCGTCTTCCTCGGGATTCTCTTCAGTTTCAATTTGT 1946
Query 2213 TTGTTCCATACACTGTACCTCAATACGTAATCTCTGGTCTCATAATGTTTGTTGCTGCTG 2272
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1947 TTGTTCCATACACTGTACCTCAATATGTAATCTCTGGTCTCATAATGTTTGTTGCTGCTG 2006
Query 2273 AAGTACTCGAAGGTGTGAATCTATCGTTGTTATCGCGGGTAATGTCATCAAGGCTATCGA 2332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2007 AAGTACTCGAAGGTGTGAATCTATCGTTGTTATCGCGGGTAATGTCATCAAGGCTATCAA 2066
Query 2333 AAGGAACGTACAACGGAGGATTGCTCTCAACAGAAGCTGGAACGTTGGCTCGTGTTGTGG 2392
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2067 AAGGAACGTACAACGGAGGATTGCTCTCAACAGAAGCTGGGACGTTGGCTCGTGTTGTGG 2126
Query 2393 CAGATGCAACCATAACATTGGGAGGATATTTGGGAAGAGGCCATCTCCTGAATGCCACTC 2452
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2127 CAGATGCAACCATAACATTAGGAGGATACTTGGGAAGAGGCCATCTCCTGAATGCCACTC 2186
Query 2453 TTCTACCATCACTTGTCATCTGCATTGGCTCCATCGTTGCTACTTGTTGTACTTATAACT 2512
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2187 TTCTACCATCACTTGTCATCTGCATTGGCTCCATTGTTGCTACTTGTTGTACTTATAACT 2246
Query 2513 CACTCTATTGATTTTGGAGTTTTGCTACCAAATTTTACAAAATAGAATAAAACAGTGTGT 2572
| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 2247 CTCTCTATTGATTTTGGAGTTTTGCTACCAA-TTTTA-AA------------CAGTGTGT 2292
Query 2573 ATGATCGATCCTCTCTTTGATTTGATTATTTTTGTTGTTCTAATTCatatgggtgtatat 2632
|||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 2293 ATGATCC-TC-TCTCTTTTATTTGATTATTTTTGTTGTTCTAATTCCTGTGGGTGTATAT 2350
Query 2633 gtgttttataatacatatagtatgtata-t--tc-gtatatatacgg---t--gaatatC 2683
|||||||||||||||||||||||||||| | || |||||||||||| | |||||||
Sbjct 2351 GTGTTTTATAATACATATAGTATGTATACTGATCAGTATATATACGGGAATATGAATATC 2410
Query 2684 AAATCCTCCATTTGTTGGAAA---T-T-CCAGTTTTGTGAGATTCTT-TT-TCTGA-AGT 2735
|||||||||||||| | |||| | | |||||||||||||||| || || | | | ||
Sbjct 2411 AAATCCTCCATTTGATAGAAACCATGTTCCAGTTTTGTGAGATT-TTATTATAT-ATAG- 2467
Query 2736 ATTGTAATAAATTCTCATATAAATTTATAAGTTTTTATTTG 2776
|||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2468 ATTGTAATAAATGCTCATATAAATTTCTAAGTTTTTATTTG 2508
Score = 370 bits (200), Expect = 3e-101
Identities = 229/242 (95%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 334 GAAGAACGAGG-ATAGATACAGGCT-TTAATCTAAACTTTGCTCTCTGCTTTCTGCGATT 391
||||||||||| | ||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 94 GAAGAACGAGGTACAGATACAGGCTCTT-ATCTAAACTTTGCTCTCTGCTTTATGCGATA 152
Query 392 AAAAGATGGTGGCTTTTGGGAAATACTTGCAGCGGAAACAAATCGAAGAATGGAG-TGGC 450
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||
Sbjct 153 AAAAGATGGTGGCTTTTGGGAAATATTTGGAGCGGAAACAAATCGAAGAATGGAGAT-GC 211
Query 451 TATTATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGCTGAACAAATCCAA 510
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 212 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAACAATATGCTGAACAAATCCAA 271
Query 511 GGCGGATCTCAACATCCTCGCCATGTTCTCAAAGATTTCTCGAGGATGCTCGATACTCAG 570
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 272 GGCGGATCTCAACATCCTCGCCATGTTCTCAAAGATTTCTCAAGGATGCTCGATACTCAG 331
Query 571 AT 572
||
Sbjct 332 AT 333
> Ahg945819 jgi|Araly1|945819|scaffold_702048.1
Length=2142
Score = 483 bits (261), Expect = 4e-135
Identities = 846/1123 (75%), Gaps = 62/1123 (6%)
Strand=Plus/Plus
Query 613 CTTTTCATGTTGGAACAACAAGGGTTGCTTTCAGGGCGATTAGCCA-A-ATTGAGGGAAT 670
|||||||||||||| |||||||| |||||| || | | || | | | | | |||| |
Sbjct 212 CTTTTCATGTTGGAGCAACAAGGATTGCTTGCAAGTAGGCTA-C-AGAGACTAAGGGGAC 269
Query 671 CTCATGATGCTATACTTGAGCAGCCTGACATATCA-AGAATTTTCGAG-CTAC-GTGAAG 727
| ||||||||| | | |||||||| || ||||| | | | | | | ||| | || |
Sbjct 270 CGCATGATGCTCTCCAAGAGCAGCCGGATATATCTCATA-TGT-CTAATCTAAAG-GAGG 326
Query 728 CA-TACAGAGATGTTGGACGAGACCTTCTTCA-GCTCCTGAAATTCGTTGAGTTGAACGC 785
| || |||| |||||| | ||| ||||| || ||| ||| || || ||| |||| ||
Sbjct 327 -AGTATAGAGCTGTTGGGCAAGATCTTCT-CAAGCTTCTGTTTTTTGTCGAGATGAATGC 384
Query 786 CATTGGTCTGCGCAAGATACTTAAGAAATTCGACAAAAGGTTTGGATATAGATTCGCTGA 845
|||||| | || |||||||| ||||||||||| ||| ||||||| ||| ||||| | |
Sbjct 385 TATTGGTATCCGTAAGATACTGAAGAAATTCGATAAACGGTTTGGTTATCGATTCACAAA 444
Query 846 TTATTACGTGAAGACCCGCGCTAATCACCCTTACTCTCAGCTTCAACAAGTTTTTA-AGC 904
||||| || ||||| || ||||| || ||||||||| | || || ||||| |||| | |
Sbjct 445 CTATTATGTCAAGACTCGAGCTAACCATCCTTACTCTGAACTCCAGCAAGTCTTTAGA-C 503
Query 905 ATGTGGGTGTTGGAGCTGTTGTTGGAGCAATTTCCCGCAATCTTCATGAGCTTCAAGAA- 963
||||||| ||||||||||||||||||| | || ||||| ||||||||||||||| ||
Sbjct 504 ATGTGGGCCTTGGAGCTGTTGTTGGAGCTGTATCTCGCAACCTTCATGAGCTTCAA-AAC 562
Query 964 AATGAAGGAAGCTT-TTATTCAATTTATGACCAACCCGTTCTTCCGGCT-CAGGATCCAG 1021
||| ||||||||| |||| | |||||||| || || ||||||| || || ||||| |
Sbjct 563 AATCAAGGAAGCTACTTAT-CGATTTATGATCAGCCTATTCTTCCT-CTTCAAGATCCTG 620
Query 1022 TGGTTGAGGCAATAAATAACG-CGGTGGACAAGTTAAC-CTTCTCGACGAA-TTTCCT-C 1077
| || || |||| | | || | ||||| | | |||| | || || || |||| | |
Sbjct 621 TCGTGGACTCAATTAG-AGCGGCAGTGGATAGGCTAACGCGG-TCAACAAACTTTC-TAC 677
Query 1078 AACTTCTTGGCACAACATGCTCTTATCATGCAAGATGATTTGGTGACTCCTTCA-GAGGA 1136
| |||| |||| || || || ||||| |||||||| || || | ||| || || ||
Sbjct 678 A-CTTCATGGCTCAGCACGCGCTTATAATGCAAGAAGAGTTACCAAGTCCG-CAAGATGA 735
Query 1137 TACAATCG-ATGA-GCGG-TCTTACCATTTTAATTCGT-TACTC-CT-G---AATCTAGG 1187
|| | | || | | | | || | | ||| | | ||| || | ||| | ||
Sbjct 736 GG-AAGGGGAAGAAGAAGATGGGAG-ATATCACTTCATGT-CTCTCTTGTTGAATTT-GG 791
Query 1188 A-AACACATTTTTGTACATGGTCAACACTTATATCATCGTCCCTACAGCGGATGACTATT 1246
||||||||| | || |||||||| || |||||||| ||||||||||| ||||||||||
Sbjct 792 TCAACACATTTCTCTATATGGTCAATACATATATCATTGTCCCTACAGCAGATGACTATT 851
Query 1247 CGATGAGCCTTGGAGCTGCAGCAACGGTTTGTGGTGTTGTCATCGGAT-CTATGGCTGTG 1305
| |||||||| || || || |||||||| || |||||||| || || | ||||||||||
Sbjct 852 CCATGAGCCTCGGTGCAGCGGCAACGGTGTGCGGTGTTGTGATTGG-TGCTATGGCTGTA 910
Query 1306 GCTCAAG-TATTTTCATCGGTTTATTTCAGCGCATGGTCCAACAAATCTTACTTCAAACC 1364
||||| | | || || |||||||| |||||||| |||||||| | ||| |||||||||||
Sbjct 911 GCTCA-GCTCTTCTCTTCGGTTTACTTCAGCGCCTGGTCCAATAGATCCTACTTCAAACC 969
Query 1365 TCTTGTGTTTAGCAGCATCG-CACTCTTTATCGGAAATTTGATGTATGCGTTGGCATATG 1423
|| | || || ||||| | | |||||||| || || ||| | ||||| || || | ||
Sbjct 970 ACTCATATTCAGTAGCATTGTC-CTCTTTATTGGGAACTTGTTATATGCATTAGCTTTTG 1028
Query 1424 A-TGCCAATTCCATAGCGCTTCTTTT-ACTCGGCCGTGTCTGT-TGTGGGTTGGGATCAG 1480
| | | ||||| |||||| |||| || | | || | | | | ||||| || ||||| |
Sbjct 1029 ACTTC-AATTCAATAGCGGTTCTCTTGATT-GGTAGACTTT-TCTGTGGATTTGGATCGG 1085
Query 1481 CAAGAGCTGTTAACCGGAGATATATCAGCGATTGTGTGCCTTTGA-GAATCCGAATGCAG 1539
||||||| || |||||||||||||| || || ||||| || || | || || | ||||||
Sbjct 1086 CAAGAGCAGTGAACCGGAGATATATAAGTGACTGTGTACCGTTAAAGA-TCAGGATGCAG 1144
Query 1540 GCATCGGCGGGTTTTGTGAGTGCAAGTGCTCTTGGAATGGCTTGTGGCCCTGCGCTTGCC 1599
|| || || |||||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1145 GCTTCAGCAGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGTGGTCCTGCGCTTGCT 1204
Query 1600 GGTTTACTCCAAATCAAATTCAAGTTTTACAAGTTTACATTTAACCAATCTACTTTGCCG 1659
||| || | ||||||| ||||| | |||| || |||||||||||||| ||| |||||
Sbjct 1205 GGTCTATTGCAAATCAGATTCACGATTTATAAACTTACATTTAACCAAGATACATTGCCT 1264
Query 1660 GGATGGGTTATGGCTGTGGCTTGGCTGT-TCTATTTGGTATGG 1701
|| ||||||||||||||||||||||| | | || |||||||||
Sbjct 1265 GGTTGGGTTATGGCTGTGGCTTGGCT-TATATACTTGGTATGG 1306
> Ahg489997 jgi|Araly1|489997|fgenesh2_kg.6__3131__AT4G11810.1
Length=2124
Score = 115 bits (62), Expect = 2e-24
Identities = 104/124 (84%), Gaps = 4/124 (3%)
Strand=Plus/Plus
Query 451 TATTATATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGCTGAACAAATCCAA 510
||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 55 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAA 114
Query 511 GGCGGATCTCAACATC-CTCGCCATGTTCTCAAAGATTTCTCGAGGATGCTCGAT-ACTC 568
| ||| || | ||| | || |||||||| ||||||||||| |||||| | ||| | ||
Sbjct 115 GTAGGAAGTCTAGATCGC-CGTCATGTTCTTAAAGATTTCTCAAGGATGTTGGATCA-TC 172
Query 569 AGAT 572
||||
Sbjct 173 AGAT 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110766432460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5