BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63020.1
Length=4948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924683 jgi|Araly1|924683|scaffold_200244.1 6741 0.0
> Ahg924683 jgi|Araly1|924683|scaffold_200244.1
Length=4412
Score = 6741 bits (3650), Expect = 0.0
Identities = 4169/4420 (94%), Gaps = 34/4420 (1%)
Strand=Plus/Plus
Query 262 GAAACTCTTCAACATGGAAGACGATTGTGAGGAGCTTCAGGTTCCCGTGGGAACTCTAAC 321
||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 8 GAATCTCTTCGACATGGAAGACGATTGCGAGGAGCTTCAGGTTCCCGTGGGAACTCTAAC 67
Query 322 CTCGATAGGTTTTAGCATTTCAAACAACAATGATCGAGATAAAATGTCTGTGC-TAGAGG 380
||||||||||||||||||||||| |||| ||||||||||| ||||||||| | || |||
Sbjct 68 TTCGATAGGTTTTAGCATTTCAAATAACACTGATCGAGATACAATGTCTGT-CATAAAGG 126
Query 381 TTGAAGCACCGAATCAGGTGACTGATTCTCGGCTAGGATTACCGAATCCGGATTCTGTCT 440
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 127 TTGAAGCACCGAATCAGGTGACTGATTCTCGGCTAGGGCTACCGAATCCGGATTCTATCT 186
Query 441 GCAGAACCTGTGGCAGCAAAGATCGAAAAGTTTGCGAAGGGCATTTCGGGGTTATAAACT 500
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GCAAAACCTGTGGCAGCAAAGATCGAAAAGTTTGCGAAGGGCATTTCGGGGTTATAAACT 246
Query 501 TCGC-GTACTCGATAATAAACCCGTATTTCCTCAAGGAGGTAGCTGCGTTGTTAAACAAA 559
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 247 TC-CAGTACTCGATAATAAACCCGTATTTCCTCAAGGAGATAGCTGCGTTGTTAAACAAA 305
Query 560 ATCTGTCCGGGGTGTAAATACATTCGAAAAAAGCAGTTTCAGATTACCGAAGACCAGCCT 619
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 ATCTGTCCGGGTTGTAAATACATTCGAAAAAAGCAGTTTCAGATTACCGAAGACCAGCCT 365
Query 620 GAGAGATGTAGATACTGCACTTTGAATACCGGTTATCCTCTAATGAAGTTTAGGGTAACT 679
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 366 GAGAGATGTAGATATTGCACTTCGAATACCGGTTATCCTCTAATGAAGTTTAGAGTAACT 425
Query 680 ACTAAAGAAGTCTTCAGGCGATCCGGAATCGTTGTTGAAGTAAACGAAGAGAGTCTGATG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACTAAAGAAGTCTTCAGGCGATCCGGAATCGTTGTTGAAGTAAACGAAGAGAGTCTGATG 485
Query 740 AAACTCAAGAAACGGGGAGTGTTAACATTGCCTCCTGACTATTGGAGTTTTTTGCCGCAA 799
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 486 AAACTCAAGAAACGGGGAGTGTTAGCATTGCCTCCTGACTATTGGAGTTTTGTGCCACAA 545
Query 800 GACTCTAATATCGACGAGAGCTGTTTGAAACCAACAAGGCGAATAATAACGCATGCACAG 859
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 546 GACTCCAATATCGACGAGAGCTGTTTGAAACCAACAAGGCGGATACTAACGCATGCACAG 605
Query 860 GTTTATGCTCTGTTAT-TAGGGATTGATCAGAGGCTCATCAAGAAGGATATCCCTATGTT 918
|||||||||||| ||| | |||||||||||||| |||||||||||||||||||| |||||
Sbjct 606 GTTTATGCTCTGCTATCT-GGGATTGATCAGAGACTCATCAAGAAGGATATCCCCATGTT 664
Query 919 CAACTCTCTTGGTCTGACATCTTTTCCTGTTACACCAAATGGTTACCGTGTAACCGAAAT 978
| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 665 CGACTCTCTTGCTCTGACATCTTTTCCTGTTACACCAAACGGTTACCGTGTAACCGAAAT 724
Query 979 AGTTCATCAGTTCAACGGAGCTCGGCTAATATTTGATGAACGGACTCGGATCTACAAGAA 1038
||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |||
Sbjct 725 AGTTCATCAGTTCAATGGAGCTCGACTAGTATTTGATGAACGGACTCGGATATACAGGAA 784
Query 1039 ACTAGTCGGCTTTGAGGGAAACACACTTGAATTGAGTTCTCGTGTGATGGAATGCATGCA 1098
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 785 ACTAGTCGGCTTTGAGGGAAACACGCTTGAATTGAGTTCTCGCGTGATTGAATGCATGCA 844
Query 1099 ATATTCCAGACTCTTTTCGGAAACTGTGTCTTCGAGTAAAGATTCCGCAAATCCGTACCA 1158
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 845 ATATTCCAGACTCTTTTCGGAAAATGTGTCTTCGAGTCAAGATTCCGCAAATCCATACCA 904
Query 1159 GAAGAAGTCTGATACACCAAAACTTTGCGGTCTAAGGTTCATGAAAGACGTGCTGCTCGG 1218
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 905 AAAGAAGTCTGATACACCAAAACTGTGCGGTCTAAGGTTCATGAAGGACGTGCTGCTCGG 964
Query 1219 TAAAAGAAGTGATCATACATTCCGGACAGTAGTTGTTGGTGATCCGTCCTTGAAGCT-CA 1277
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 965 TAAAAGAAGCGATCATACATTCCGGACAGTAGTTGTTGGTGATCCGTCCTTGAAGCTTCA 1024
Query 1278 ACGAGATTGGCATACCCGAGAGTATCGCAAAAAGGCTTCAAGTATCAGAGCATCTCAACC 1337
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1025 T-GAGATTGGCATACCCGAGCGTATCGCAAAAAGGCTTCAAGTATCAGAGCATCTCAACA 1083
Query 1338 AGTGCAATAAAGAAAGGCTTGTCACTTCCTTTGTCCCCACA-C-TGTTGGACAATAAAGA 1395
| || || || ||| |||| ||||||| || | ||||| || | |||| || ||||||||
Sbjct 1084 ACTGGAACAACGAACGGCTAGTCACTTTCTGT-TCCCC-CAACCTGTTCGATAATAAAGA 1141
Query 1396 GATGCATGTGAGAAGAGGAGATAGATTGGTGGCTATTCAAGTCAATGACCTCCAAACCGG 1455
| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1142 GGTGCATGTGAGAAGAGGAGATAGATTGGTGGCTATTCGAGTCAGTGACCTCCAAACCGG 1201
Query 1456 AGACAAAATATTCCGGAGTTTAATGGATGGAGACACTGTGCTGATGAACAGACCGCCTTC 1515
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1202 AGACAAAATATTCCGGAATTTAATGGATGGAGACACAGTGCTGATGAACAGACCGCCTTC 1261
Query 1516 GATTCATCAGCATTCGCTTATTGCAATGACAGTTAGAATCCTCCCAACGACTTCTGTTGT 1575
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1262 GATTCATCAGCATTCGCTTATTGCAATGACAGTTAGAGTCCTCCCAACGACTTCTGTTGT 1321
Query 1576 CTCCTTGAACCCGATCTGCTGTTTGCCGTTCCGTGGTGATTTTGATGGAGATTGTCTCCA 1635
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1322 CTCCTTGAATCCGATCTGCTGTTTGCCGTTTCGTGGTGATTTTGATGGAGATTGTCTTCA 1381
Query 1636 CGGTTACGTTCCTCAGTCCATTCAAGCAAAGGTCGAGCTTGATGAGCTTGTTGCTTTGGA 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CGGTTACGTTCCTCAGTCCATTCAAGCAAAGGTCGAGCTTGATGAGCTTGTTGCTTTGGA 1441
Query 1696 TAAGCAGCTTATCAACAGACAGAATGGTCGGAACTTGCTTTCTTTAGGACAAGATAGCTT 1755
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1442 TAAGCAGCTTATCAACCGACAGAATGGTCGGAACTTGCTTTCCTTAGGACAAGATAGCTT 1501
Query 1756 GACGGCGGCTTATCTGGTCAATGTTGAGAAGAACTGTTATCTTAATCGAGCTCAGATGCA 1815
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1502 GACGGCGGCTTATCTGGTTAATGTCGAGAAGAACTGTTATCTGAATCGAGCTCAGATGCA 1561
Query 1816 GCAGCTTCAAATGTATTGCCCATTTCAGCTTCCTCCGCCTGCAATTATCAAAGCTTCTCC 1875
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1562 GCAGCTTCAAATGTACTGCCCATTTCAGCTTCCTCCGCCTGCGATTATCAAAGCTTCTCC 1621
Query 1876 TTCGAGCACTGAGCCTCAATGGACGGGAATGCAGCTATTCGGAATGCTGTTTCCTCCCGG 1935
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1622 TTCGAGCACTGAGCCTCAATGGACGGGAATGCAGCTATTCGGGATGCTGTTTCCTCCCGG 1681
Query 1936 GTTTGACTACACTTATCCTCTGAATAATGTAGTTGTGAGTAACGGCGAGCTTTTGTCTTT 1995
||||||||||||||| ||||||||| |||| |||||||||||||| || |||||||||||
Sbjct 1682 GTTTGACTACACTTACCCTCTGAATGATGTGGTTGTGAGTAACGGAGAACTTTTGTCTTT 1741
Query 1996 CTCTGAAGGATCTGCTTGGCTCAGAGATGGAGAAGGGAATTTCATCGAGAGATTGCTCAA 2055
|||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| ||||
Sbjct 1742 CTCTGAAGGATCTGCTTGGCTCCGAGATGGAGAAGGTAATTTCATCCAGGGATTGATCAA 1801
Query 2056 ACACGACAAAGGGAAAGTTCTTGATATCATCTATTCCGCTCAAGAAATGCTATCTCAGTG 2115
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 ACACGACAAAAGGAAAGTTCTTGATATCATCTATTCCGCTCAAGAAATGCTATCTCAGTG 1861
Query 2116 GTTGCTGATGCGCGGTTTGAGTGTGTCCTTGGCGGATTTGTACCTTTCCTCTGATCTGCA 2175
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1862 GTTGCTGATGCGCGGATTGAGTGTTTCCTTGGCGGATTTGTACCTTTCCTCTGATCCGCA 1921
Query 2176 GTCTCGAAAAAACTTGACTGAAGAGATATCATACGGGTTGCGGGAAGCTGAGCAAGTTTG 2235
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1922 GTCTCGTAAAAACTTGACTGAAGAGATATCATACGGATTACGGGAAGCTGAGCAAGTCTG 1981
Query 2236 CAACAAGCAACAGCTAATGGTTGAATCTTGGAGAGATTTCCTTGCAGTTAATGGGGAGGA 2295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 CAACAAGCAACAGCTAATGGTTGAATCTTGGAGAGATTTCCTTGCAGTTAATGGGGAGGA 2041
Query 2296 TAAGGAAGAGGATTCAGTAT-CGG---ATTTGGCCCGATTCTGCTATGAGAGACAAAAAT 2351
| ||| |||||||||||| | ||| |||||||||| ||||||||||||||||||||||
Sbjct 2042 TGAGGGAGAGGATTCAGT-TGCGGGGGATTTGGCCCGGTTCTGCTATGAGAGACAAAAAT 2100
Query 2352 CCGCTACATTAAGCGAACTTGCAGTCAGTGCTTTTAAGGATGCTTACAGAGATGTTCAGG 2411
|||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2101 CCGCTACATTAAGCAAAATTGCAGTTAGTGCTTTTAAGGATGCTTGCAGAGATGTTCAGG 2160
Query 2412 CACTAGCATATAGGTATGGTGATCAATCCAACTCTTTTTTGATCATGTCGAAAGCCGGCA 2471
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 2161 CACTAGCATATAGGTATGGCGATCAATCCAACTCTTTTTTGATCATGTCAAAAGCCGGTA 2220
Query 2472 GCAAAGGGAATATCGGGAAGCTGGTTCAGCACAGCATGTGTATCGGTCTGCAGAATTCAG 2531
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2221 GCAAAGGGAATATCGGGAAGCTGGTTCAACACAGCATGTGTATCGGTCTGCAGAATTCGG 2280
Query 2532 CAGTTTCTTTGTCCTTTGGGTTTCCGCGTGAACTGACTTGCGCTGCTTGGAATGACCCGA 2591
||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2281 CAGTTTCTTTGTCCTATGGGTTTCCGCGTGAGCTGACTTGCGCTTCTTGGAATGACCCGA 2340
Query 2592 ACAGTCCACTTCGTGGCGCAAAGGGAAAAGACAGTACCACTACTGAGTCATATGTTCCTT 2651
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2341 ACAGTCCACTTCGTGGCGCAAAGGGAGAAGACAGTACCGCTACTGAGTCATATGTTCCTT 2400
Query 2652 ATGGAGTCATTGAGAACTCGTTTCTAACGGGTCTGAATCCATTGGAATCTTTTGTTCATT 2711
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2401 ATGGAGTCATTGAGAACTCGTTTCTAACGGGTCTGAATCCGTTGGAATCTTTTGTTCATT 2460
Query 2712 CAGTTACAAGTCGTGACAGTTCATTCAGTGGTAATGCTGATCTCCCGGGGACACTGAGCA 2771
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2461 CAGTTACAAGTCGTGACAGCTCATTCAGTGGTAATGCTGATCTCCCCGGGACACTGAGCA 2520
Query 2772 GAAGATTAATGTTCTTCATGCGGGACATATACGCTGCTTATGATGGCACTGTGAGAAATT 2831
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2521 GAAGATTAATGTTCTTCATGCGGGACATATACGCTGCTTATGATGGCACAGTGAGAAATT 2580
Query 2832 CTTTCGGAAACCAGTTAGTCCAGTTTACTTATGAGACTGATGGTCCCGTTGAAGATATCA 2891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 CTTTCGGAAACCAGTTAGTCCAGTTTACTTATGAGACTGATGGTCCCGTTGAAGATATCA 2640
Query 2892 CAGGTGAGGCACTTGGCTCACTTTCTGCTTGTGCATTATCTGAGGCAGCTTACAGCGCGC 2951
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 CCGGTGAAGCACTTGGCTCACTTTCTGCTTGTGCATTATCTGAGGCAGCTTACAGCGCGC 2700
Query 2952 TGGACCAGCCAATCAGCCTTCTTGAAACTTCGCCGCTTCTGAATCTTAAGAATGTATTGG 3011
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2701 TGGACCAGCCAATCAGCCTTCTGGAAACTTCGCCGCTTCTGAATCTTAAGAATGTCTTGG 2760
Query 3012 AGTGTGGATCAAAGAAAGGTCAACGAGAACAGACAATGTCTTTGTATTTGTCTGAATACC 3071
|||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||
Sbjct 2761 AGTGTGGATCGAAGAAAGGTCAAAGAGAACAGACTATGACTTTGTATTTGTCTGAA-ACC 2819
Query 3072 -TTTCAAAGAAAAAGCACGGGTTCGAATACGGGTCACTTGAGATCAAGAACCACTTGGAG 3130
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2820 CTTTCAAAGAAAAAGCACGGGTTCGAATACGGGTCACTGGAGATCAAGAACCACTTGGAG 2879
Query 3131 AAACTTAGTTTCTCAGAGATCGTTTCAACATCTATGATAATATTCTCTCCAAGTTCTAAC 3190
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2880 AAACTAAGTTTCTCTGAGATCGTTTCAACATCTATGATAATATTCTCTCCAAGTACTAAC 2939
Query 3191 ACGAAAGTACCGTTAAGCCCGTGGGTTTGCCATTTTCATATCTCTGAGAAAGTACTGAAG 3250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2940 ACGAAAGTACCGTTAAGCCCGTGGGTTTGCCATTTTCATATCTCTGAGAAAGTACTGAAG 2999
Query 3251 CGGAAACAACTGAGCGCAGAATCCGTTGTTTCATCTTTAAACGAGCAGTACAAGAGCAGG 3310
||||||||||| | || ||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 3000 CGGAAACAACTCAACGTAGAATCCGTGGTTTCTTCATTAAACGAGCAGTACAAGAGCAGG 3059
Query 3311 AACAGAGAACTGAAGCTTGATATAGTTGACTTAGATATACAAAACACAAACCACTGCTCT 3370
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3060 AACAGAGAACTGAAGCTTGATATAGTTGATTTAGATATACAAAGCACAAACCACTGCTCT 3119
Query 3371 TCAGACGATCAGGCAATGAAGGATGATAACGTTTGCATCACGGTGACTGTAGTTGAAGCC 3430
||||||||| |||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 3120 TCAGACGATGAGGCAATGAAGGATGATAGCTTTTGCATCACGGTGACTGTAATCGAAGCC 3179
Query 3431 TCAAAGCACTCGGTTTTGGAACTGGATGCTATTCGTCTCGTTTTGATCCCTTTTCTTCTT 3490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3180 TCAAAGCACTCGGTTTTGGAACTGGATGCTATTCGTCTCGTTTTGATCCCTTTTCTTCTT 3239
Query 3491 GACTCTCCTGTCAAAGGTGATCAAGGGATCAAAAAGGTGAATATTTTGTGGACTGACCGA 3550
|||||||||||||||||| ||||| ||| ||||||||| |||| || ||||| ||||||
Sbjct 3240 GACTCTCCTGTCAAAGGTTCTCAAGAGATTAAAAAGGTGGATATCTTATGGACAGACCGA 3299
Query 3551 CCAAAAGCGCCAAAAAGGAATGGGAATCATTTGGCGGGTGAGCTGTACTTGAAGG-TTAC 3609
|||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| ||||
Sbjct 3300 CCAAAAGCGCCAAAAAGGAACGGGGACCATTTGGCGGGTGAGCTGTACTT-AAGGGTTAC 3358
Query 3610 AATGTATGGAGATCGGGGCAAAAGAAACTGTTGGACCGCTCTTTTAGAAACCTGCCTTCC 3669
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 3359 AATGTATGGAGATCGGGGAAAAAGAAACTGTTGGACCGCTCTTTTAGAAACCTGTCTTCC 3418
Query 3670 CATCATGGATATGATTGACTGGGGCCGAAGCCATCCTGATAATATCCGACAATGCTGCTC 3729
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3419 CATTATGGATATGATTGACTGGAGCCGAAGCCATCCTGATAATATCCGACAATGCTGCTC 3478
Query 3730 AGTTTATGGAATAGATGCTGGACGCAGCATTTTCGTAGCAAATTTGGAGTCCGCGGTGTC 3789
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 3479 GGTTTATGGAATAGACGCTGGACGGAGCATTTTCATAGCAAATTTGGAGTCCGCGGTGTC 3538
Query 3790 AGATACTGGTAAGGA-GATACTAAGAGAGCATCTGCTTCTCGTAGCTGATAGTCTCTCTG 3848
|||||| |||||| | |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 3539 AGATACCGGTAAG-ACGATACTAAAAGAGCATCTGCTTCTCGTAGCTGACAGTCTCTCTG 3597
Query 3849 TTACGGGAGAGTTTGTGGCATTAAACGCCAAAGGTTGGAGTAAACAAAGACAGGTCGAGT 3908
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3598 TTACCGGAGAATTTGTGGCATTAAACGCCAAAGGTTGGAGTAAACAAAGACAGGTCGAGT 3657
Query 3909 CCACGCCTGCACCTTTTACTCAAGCATGCTTCTCAAGCCCAAGTCAATGCTTTCTCAAAG 3968
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 3658 CCACGCCTGCACCTTTTACTCAAGCATGCTTTTCGAGCCCAAGTCAATGCTTTCTCAAAG 3717
Query 3969 CTGCTAAGGAAGGTGTCAGAGACGATCTTCAAGGGTCTATCGACGCTTTAGCTTGGGGAA 4028
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3718 CTGCTAAGGAAGGTGTTAGAGACGATCTTCAAGGGTCTATCGACGCGCTAGCTTGGGGAA 3777
Query 4029 AAGTTCCTGGTTTCGGAACTGGAGATCAGTTCGAAATCATCATTTCGCCAAAGGTTCACG 4088
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3778 AAGTTCCTGGTTTTGGAACTGGAGATCAGTTTGAAATCATCATTTCGCCAAAGGTTCACG 3837
Query 4089 GGTTTACTACACCGGTAGATGTGTATGACCTTTTGAGTAGTACAAAGACGATGCGTAGAA 4148
||||||||||||||||| |||||||||||||| ||||||||||| | | | |||
Sbjct 3838 GGTTTACTACACCGGTAAATGTGTATGACCTTCTGAGTAGTACAC---C--TCCAAAGA- 3891
Query 4149 CAAACTCTGCGCCTAAATCAGACAAAGCCACGGTCCAGCCTTTTGGCTTGCTACATTCCG 4208
||||||||||||||||||||||||||| |||||||||||| || | ||||||| | |||
Sbjct 3892 CAAACTCTGCGCCTAAATCAGACAAAGTCACGGTCCAGCCATTCGACTTGCTAGGTACCG 3951
Query 4209 CATTCCTGAAAGATATCAAGGTACTCGATGGGAAAGGGATTCCTATGTCACTGCTTAGAA 4268
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 3952 CATTCCTGAAAGGTATCAAGGTACTCGATGGGAAAGGGATTTCTATGTCACGGCTTAGAA 4011
Query 4269 CGATCTTTACATGGAAAAACATCGAGTTGCTTTCCCAGTCATTGAAACGCATTCTCCAC- 4327
|||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||| ||
Sbjct 4012 CGATCTTTACATGGGAAAACATCGAGAAGCTTTCCCAGTCACTGAAACGCATACTC-ACC 4070
Query 4328 AGTTACGAGATCAATGAACTGTTGAATGAGAGGGACGAAGGACTTGTGAAGATGGTTCTG 4387
||||||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||
Sbjct 4071 AGTTACGAGATCAATGATCCATTGAATGGGAGGGACGAAGAACTTGTGATGATGGTTCTG 4130
Query 4388 CAGTTGCACCCCAACAGTGTTGAGAAAATTGGACCAGGCGTCAAAGGAATCCGGGTCGCT 4447
|| |||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||
Sbjct 4131 CACTTGCACCCCAACAGAGCTGAGAAAATTGGACCAGGCCTTAAAGGAATCCGGGTCGCT 4190
Query 4448 AAATCGAAGCACGGAGATTCTTGTTGCTTCGAGGTTGTAAGAATAGACGGGACATTCGAA 4507
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4191 AAATCGAAGCACGGAGATTCTCGTTGCTTCGAGGTTGTAAGAATAGACGGGACATTCGAA 4250
Query 4508 GACTTCTCATACCACAAGTGTGTCTTGGGAGCAACAAAGATAATTGCCCCAAAGAAAATG 4567
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4251 GACTTTTCGTACCACAAGTGTGTCTTGGGAGCAACAAAGATCATTGCCCCAAAGAAAATG 4310
Query 4568 AACTTCTACAAGTCAAAGTATCTTAAAAATGGTACACTCGAGTCCGGT-GGTTTCTCCGA 4626
||||| ||||||||||||||||||||||||||||||| | || ||||| || | ||||||
Sbjct 4311 AACTTATACAAGTCAAAGTATCTTAAAAATGGTACACACCAGCCCGGTAGGCT-CTCCGA 4369
Query 4627 AAACCCGTGAACAGCCAAGTAAGAGTaaaaaaaaaGACTG 4666
||||||| ||||| ||||||| || || |||| |||||
Sbjct 4370 AAACCCGCAAACAGTCAAGTAAAAGGAAGAAAAG-GACTG 4408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 187281316733
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5