BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63030.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475045 jgi|Araly1|475045|fgenesh2_kg.2__175__AT1G63030.1 1074 0.0
> Ahg475045 jgi|Araly1|475045|fgenesh2_kg.2__175__AT1G63030.1
Length=741
Score = 1074 bits (581), Expect = 0.0
Identities = 695/749 (93%), Gaps = 12/749 (2%)
Strand=Plus/Plus
Query 31 AAAGCTTCATTTCAATTCTGTTTCGAGAACCCTTTGAGAACCAGATCGGAGATGGAAAAC 90
||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 AAAGCTTCATTTCAATTCTATTTCGAGAACCCTTTGTGAACCAGATCGGATATGGAAAAC 60
Query 91 GACGATATCACCGTGGCGGAGATGAAGCCAAAGAAGCGTGCTGGACGGAGGATTTTCAAG 150
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GACGACATCACCGTGGCGGAGATGAAGCCAAAGAAGCGTGCTGGACGGAAGATTTTCAAG 120
Query 151 GAGACACGTCACCCAATCTACAGAGGCGTGCGGCGTAGGGACGGCGACAAATGGGTATGC 210
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 121 GAGACACGTCACCCAATCTACAGAGGTGTGCGGCGTAGGAACGGCGACAAATGGGTCTGC 180
Query 211 GAAGTCCGTGAACCGATTCATCAGCGTCGAGTCTGGCTCGGAACTTATCCGACGGCAGAT 270
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 181 GAAGTCCGTGAACCGATTCATCAGCGCCGAGTCTGGCTCGGAACTTATCCGACGGCGGAG 240
Query 271 ATGGCCGCACGTGCTCACGACGTGGCGGTTCTTGCTCTGCGCGGGAGATCCGCGTGTTTG 330
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGCGGCTCGTGCTCACGACGTGGCGGTTCTTGCTCTGCGCGGGAGATCCGCGTGTTTG 300
Query 331 AATTTCTCCGATTCTGCTTGGAGGTTGCCGGTGCCGGCATCCACTGATCCGGACACGATC 390
|||||||| ||||| |||||| ||||||||||||| | ||| |||||||| |||||||||
Sbjct 301 AATTTCTCTGATTCCGCTTGGCGGTTGCCGGTGCCAGAATCAACTGATCCAGACACGATC 360
Query 391 AGGCGCACGGCGGCCGAAGCAGCGGAGATGTTCAGGCCGCCGGAGTTTAGTACAGGAATT 450
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CGGCGTACCGCGGCCGAAGCAGCGGAGATGTTCAGGCCGCCGGAGTTTAGTACTGGAATT 420
Query 451 ACGGTTTTACCCTCAGCCAGTGAGTTTGACACGTCGGATGAAGGAGTCGCTGGAATGATG 510
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 421 ACGGTTTTACCCTCAGCCAGTGAGTTTGACACGTCGGATGAGGGAGTCGCCGGAATGATG 480
Query 511 ATGAGGCTCGCGGAGGAGCCGTTGATGTCGCCGCCAAGATCGTACATTGATATGAATACG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAGGCTCGCGGAGGAGCCGTTGATGTCGCCGCCAAGATCGTACATTGATATGAATACG 540
Query 571 AGTGTGTACGTGGACGAAGAAATGTGTTACGAAGATTTGTCACTTTGGAGTTACTAAAAT 630
| | |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 541 AATATGTACGTGGAAGAAGAAATGTATTACGAAGACTTGTCACTTTGGAGTTACTAAAAT 600
Query 631 ACGTATGTGTTAA-AAAACCAAAGATCGTATGTGTATGTAT--GCATAATAAATGGGCTT 687
|||||||||| || ||||||||| || | || ||| ||| ||||||||||||||| |
Sbjct 601 ACGTATGTGT-AATAAAACCAAA-ATAAAAAGT-TATATATTTGCATAATAAATGGGCAT 657
Query 688 AATGATGGGCATAGATATGATAGGTCCAGCCTATA-TGTTAAATGTGTTTTATTTTTTGG 746
|||||||||| || |||||||||||||| |||||| ||||||||||||||| || ||
Sbjct 658 AATGATGGGCTTAAATATGATAGGTCCAACCTATAATGTTAAATGTGTTTT-TT----GG 712
Query 747 TTTATCTAGTTTCCTAGGTATTTACCAAA 775
|||| |||||||||||||||||||| |||
Sbjct 713 TTTACCTAGTTTCCTAGGTATTTACTAAA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5