BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63050.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924677 jgi|Araly1|924677|scaffold_200238.1 2338 0.0
Ahg920110 jgi|Araly1|920110|scaffold_101391.1 1330 0.0
Ahg911026 jgi|Araly1|911026|Al_scaffold_0001_1280 889 0.0
> Ahg924677 jgi|Araly1|924677|scaffold_200238.1
Length=1438
Score = 2338 bits (1266), Expect = 0.0
Identities = 1369/1420 (96%), Gaps = 1/1420 (0%)
Strand=Plus/Plus
Query 108 ACAACCATGGAATTGCTTGACATGAACTCAATGGCTGCCTCAATCGGCGTCTCCGTCGCC 167
||| ||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||
Sbjct 15 ACAGCCATGGAATTGCTTGACATGAACTCCTTGGCTTCTTCAATCTGCGTCTCCGTCGCC 74
Query 168 GTTCTCCGTTTCCTCCTCTGTTTCGTCGCAACGATACCAATCTCATTTTTATGGCGATTC 227
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 75 GTTCTCCGTTTCCTCCTCTGTTTCGTCGCAACGATACCAATCTCGTTCTTATGGCGATTC 134
Query 228 ATCCCGAGTCGACTCGGTAAACACATATACTCAGCTGCTTCTGGAGCTTTCCTCTCTTAT 287
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 135 GTCCCGAGTCGACTCGGTAAACACACCTACTCAGCTGCTTCTGGAGCTTTCCTCTCTTAT 194
Query 288 CTCTCCTTTGGCTTCTCCTCAAATCTTCACTTCCTTGTCCCAATGACGATTGGTTACGCT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 CTCTCCTTTGGCTTCTCCTCAAATCTTCACTTCCTTGTCCCAATGACGATTGGTTACGCT 254
Query 348 TCAATGGCGATTTATCGACCCTTGTCTGGATTCATTACTTTCTTCCTAGGCTTCGCTTAT 407
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 255 TCAATGGCGATTTATCGACCCTTGTCTGGATTGATTACTTTCTTCCTGGGCTTCGCTTAT 314
Query 408 CTCATTGGCTGTCATGTGTTTTATATGAGTGGTGATGCTTGGAAAGAAGGAGGAATTGAT 467
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 315 CTCATTGGCTGTCATGTGTTTTATATGAGTGGAGATGCTTGGAAAGAAGGAGGAATTGAC 374
Query 468 TCTACTGGAGCTTTGATGGTATTAACACTGAAAGTGATTTCGTGTTCGATAAACTACAAC 527
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 375 TCTACTGGAGCTTTGATGGTGTTAACACTGAAAGTGATTTCGTGTTCGATAAATTACAAC 434
Query 528 GATGGAATGTTGAAAGAAGAAGGTCTACGTGAGGCTCAGAAGAAGAACCGTTTGATTCAG 587
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 435 GATGGAATGTTGAAAGAAGAAGGTCTCCGTGAGGCTCAGAAGAAGAACCGTTTGATTCAG 494
Query 588 ATGCCTTCTCTTATTGAGTACTTTGGTTATTGCCTCTGTTGTGGAAGCCATTTCGCTGGC 647
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 495 AGGCCTTCTCTAATTGAGTACTTTGGTTATTGCCTTTGTTGTGGAAGCCATTTCGCTGGC 554
Query 648 CCGGTTTTCGAAATGAAAGATTATCTCGAATGGACTGAAGAGAAAGGAATTTGGGCTGTT 707
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 555 CCGGTTTTCGAAATGAAAGATTATCTTGAATGGACTGAAGAGAAAGGAATTTGGGATGTT 614
Query 708 TCTGAAAAAGGAAAGAGACCATCGCCTTATGGAGCAATGATTCGAGCTGTGTTTCAAGCT 767
|||| |||||||||| ||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 615 TCTGTAAAAGGAAAGCGACCATCGCCTTATGGAGCAACGATTCGAGCTATATTTCAAGCT 674
Query 768 GCGATTTGTATGGCTCTCTATCTCTATTTAGTACCTCAGTTTCCGTTAACTCGGTTCACT 827
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 675 GCGATTTGTATGGCTCTGTATCTCTATTTAGTACCTCAGTTTCCGTTAACCCGGTTCACT 734
Query 828 GAACCAGTGTACCAAGAATGGGGATTCTTGAAGAGATTTGGTTACCAATACATGGCGGGT 887
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 735 GAACCAGTCTACCAAGAATGGGGATTCTGGAAGAGATTTGGTTACCAATACATGGCGGGT 794
Query 888 TTCACGGCTCGTTGGAAGTATTACTTTATATGGTCTATCTCAGAGGCTTCTATTATTATC 947
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 795 TTCACGGCTCGTTGGAAGTATTACTTCATATGGTCTATTTCAGAGGCTTCTATTATTATC 854
Query 948 TCTGGTTTGGGTTTCAGTGGTTGGACTGATGAAACTCAGACAAAGGCTAAATGGGACCGC 1007
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 855 TCTGGTTTGGGTTTCAGTGGTTGGACTGATGAAACTCAAACAAAGGCGAAATGGGACCGT 914
Query 1008 GCTAAGAATGTCGATATTTTGGGGGTTGAGCTTGCCAAGAGTGCGGTTCAGATTCCGCTT 1067
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GCGAAAAATGTCGATATTTTGGGGGTTGAGCTTGCCAAGAGTGCGGTTCAGATTCCGCTT 974
Query 1068 TTCTGGAACATACAAGTCAGCACATGGCTCCGTCACTACGTATATGAGAGAATTGTGAAG 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TTCTGGAACATACAAGTCAGCACATGGCTCCGTCACTACGTATATGAGAGAATTGTGAAG 1034
Query 1128 CCCGGGAAGAAAGCGGGTTTCTTCCAATTGCTAGCTACGCAAACCGTCAGTGCTGTCTGG 1187
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CCCGGGAAGAAAGCAGGTTTCTTCCAATTGCTAGCTACGCAAACCGTCAGTGCTGTCTGG 1094
Query 1188 CATGGACTGTATCCTGGATACATTATATTCTTTGTGCAATCAGCATTGATGATCGATGGT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CATGGACTGTATCCTGGATACATTATATTCTTTGTGCAATCAGCATTGATGATCGATGGT 1154
Query 1248 TCGAAAGCTATTTACCGGTGGCAACAAGCAATACCTCCGAAAATGGCAATGCTGAGAAAT 1307
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1155 TCGAAAGCTATTTACCGATGGCAACAAGCAATCCCTCCGAAAATGGCAATGCTGAGAAAT 1214
Query 1308 GTTTTGGTTCTCATCAATTTCCTCTACACAGTAGTGGTTCTCAATTACTCATCCGTCGGT 1367
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1215 GTTTTGGTTCTCATCAATTTCCTCTACACAGTATTGGTTCTCAATTACTCATCCGTTGGT 1274
Query 1368 TTCATGGTTTTAAGCTTGCACGAAACACTAGTCGCCTTCAAGAGTGTATATTACATTGGA 1427
|||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 1275 TTCATGGTTTTAAGCTTGCATGAAACAATCGTCGCCTTCAAGAGTGTATATTACATTGGA 1334
Query 1428 ACAGTTATACCTATCGCTGTGCTTCTTCTCAGCTACTTAGTTCCTGTGAAGCCTGTTAGA 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 ACAGTTATACCTATCGCTGTGCTTCTTCTCAGCTACTTAGTTCCTGTGAAGCCTGTTAGA 1394
Query 1488 CCAAAGACCAGAAAAGAAGAATAATGTTGTCTTTTTAAAA 1527
|||||||| ||||| || ||||||||||||||||| ||||
Sbjct 1395 CCAAAGACGAGAAAGGACGAATAATGTTGTCTTTT-AAAA 1433
> Ahg920110 jgi|Araly1|920110|scaffold_101391.1
Length=1432
Score = 1330 bits (720), Expect = 0.0
Identities = 1173/1391 (84%), Gaps = 34/1391 (2%)
Strand=Plus/Plus
Query 138 ATGGCTGCCTCAATCGGCGTCTCCGTCGCCGTTCTCCGTTTCCTCCTCTGTTTCGTCGCA 197
|||||||| || ||||| || || |||||||||||||| ||||||||||||||||| ||
Sbjct 39 ATGGCTGCTTCGATCGGAGTTTCGGTCGCCGTTCTCCGATTCCTCCTCTGTTTCGTTGCC 98
Query 198 ACGATACCAATCTCAT-TTTTATGGCGATTCATCCCGAGTCGACTCGGTAAACACATATA 256
||||| || | |||| | || ||| || ||||||||||||||||||||||| | ||
Sbjct 99 ACGATCCCTGTTTCATCCGCT-TGTCGAATCGTCCCGAGTCGACTCGGTAAACACTTGTA 157
Query 257 CT-CAGCTGCTTCTGGAGCTTTCCTCTCTTATCTCTCCTTTGGCTTCTCCTCAAATCTTC 315
| | |||||||| || ||||||||||||||||| |||||||| |||||||| || ||||
Sbjct 158 -TGCCGCTGCTTCAGGTGCTTTCCTCTCTTATCTGTCCTTTGGATTCTCCTCCAACCTTC 216
Query 316 ACTTCCTTGTCCCAATGACGATTGGTTACGCTTCAATGGCGATTTATCGACCCTTGTCTG 375
|||||||||| || |||||||| || || |||||||||||||||||| ||||| || ||
Sbjct 217 ACTTCCTTGTTCCGATGACGATCGGCTATGCTTCAATGGCGATTTATAGACCCAAGTGTG 276
Query 376 GATTCATTACTTTCTTCCTAGGCTTCGCTTATCTCATTGGCTGTCATGTGTTTTATATGA 435
|| |||| ||||||||||| || |||| |||||| |||||||||||| ||||||||||||
Sbjct 277 GAATCATCACTTTCTTCCTCGGTTTCGGTTATCTTATTGGCTGTCATATGTTTTATATGA 336
Query 436 GTGGTGATGCTTGGAAAGAAGGAGGAATTGATTCTACTGGAGCTTTGATGGTATTAACAC 495
|||||||||| ||||||||||||||||| || ||||||||||| || ||||| ||||| |
Sbjct 337 GTGGTGATGCGTGGAAAGAAGGAGGAATCGACTCTACTGGAGCGTTAATGGTGTTAACGC 396
Query 496 TGAAAGTGATTTCGTGTTCGATAAACTACAACGATGGAATGTTGAAAGAAGAAGGTCTAC 555
||||||| || || ||| |||| || ||||| ||||| |||||||| || ||||||||||
Sbjct 397 TGAAAGTTATCTCATGTGCGATGAATTACAATGATGGGATGTTGAAGGAGGAAGGTCTAC 456
Query 556 GTGAGGCTCAGAAGAAGAACCGTTTGATTCAGATGCCTTCTCTT-ATTGAGTACTTTGGT 614
|||| ||||||||||| ||||| |||||||||||||| ||| || |||||||||||||||
Sbjct 457 GTGAAGCTCAGAAGAAAAACCGATTGATTCAGATGCCATCT-TTGATTGAGTACTTTGGT 515
Query 615 TATTGCCTCTGTTGTGGAAGCCATTTCGCTGGCCCGGTTT-TCGAAATGAAAGATTATCT 673
|| |||||||||||||| |||||||| ||||| || |||| | |||||||||||||||||
Sbjct 516 TACTGCCTCTGTTGTGGTAGCCATTTTGCTGGTCCTGTTTAT-GAAATGAAAGATTATCT 574
Query 674 CGAATGGACTGAAGAGAAAGGAATTTGGGCTGTTTCTGAAAAAGGAAAGAGACCATCGCC 733
|||||||| |||| |||||| ||||||| | |||||||||| ||||| | ||||||||
Sbjct 575 TGAATGGACCGAAGGGAAAGGGATTTGGGATACTTCTGAAAAAAGAAAGCGGCCATCGCC 634
Query 734 TTATGGAGCAATGATTCGAGCTGTGTTT-CAAGCTGCGATTTGTATGGCTCTCTATCTCT 792
||||||||| | || |||||| | ||| |||||||||||||| |||||||| |||||||
Sbjct 635 TTATGGAGCTACAATCCGAGCTAT-TTTGCAAGCTGCGATTTGCATGGCTCTGTATCTCT 693
Query 793 ATTTAGTACCTCAGTTTCCGTTAACTCGGTTCACTGAACCAGTGTACCAAGAATGGGGAT 852
||||||| ||||| | |||||||||||||||||| ||||| ||||| ||||||||||| |
Sbjct 694 ATTTAGTGCCTCAATATCCGTTAACTCGGTTCACAGAACCCGTGTATCAAGAATGGGGTT 753
Query 853 TCTTGAAG-AGATTTGGTTACCAATACATGGCGGGTTTCACGGCTCGTTGGAAGTATTAC 911
||||| || | |||| ||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 754 TCTTG-AGAAAATTTAGTTACCAATACATGGCGGGATTCACGGCCCGTTGGAAATATTAC 812
Query 912 TTTATATGGTCTATCTCAGAGGCTTCTATTATTATCTCTGGTTTGGGTTTCAGTGGTTGG 971
|| || ||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 813 TTCATCTGGTCAATTTCAGAGGCTTCTATTATCATCTCTGGTTTGGGTTTCAGTGGTTGG 872
Query 972 ACTGATGAAACT-CAGACAAAGGCTAAATGGGACCGCGCTAAGAATGTCGATATTTTGGG 1030
|||||||| || || ||||| | ||||||||||| || ||||| || || ||| | ||
Sbjct 873 ACTGATGATGCTTCAC-CAAAGCCCAAATGGGACCGTGCCAAGAACGTAGACATTCTCGG 931
Query 1031 GGTTGAGCTTGCCAAGAGTGCGGTTCAGATTCCGCTTTTCTGGAACATACAAGTCAGCAC 1090
|| || || || ||||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 932 TGTCGAACTAGCTAAGAGCGCTGTTCAGATTCCGCTTGTATGGAACATACAAGTCAGCAC 991
Query 1091 ATGGCTCCGTCACTACGTATATGAGAGAATTGTGAAGCCCGGGAAGAAAGCGGGTTTCTT 1150
||| | ||||||||||| || || ||| ||||| || ||| |||||||||||||||||
Sbjct 992 GTGGTTGCGTCACTACGTGTACGAAAGACTTGTGCAGAACGGAAAGAAAGCGGGTTTCTT 1051
Query 1151 CCAATTGCTAGCTACGCAAACCGTCAGTGCTGTCTGGCATGGACTGTATCCTGGATACAT 1210
||| || ||||||| |||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 1052 CCAGTTATTAGCTACACAAACCGTCAGTGCGGTTTGGCATGGACTATATCCTGGATATAT 1111
Query 1211 TATATTCTTTGTGCAATCAGCATTGATGATCG-ATGGTTCGAAAGCT-ATTTACCGGTGG 1268
|| |||||||| || ||||| |||||||||| | || || | | | ||||||||||||
Sbjct 1112 GATGTTCTTTGTTCAGTCAGCTTTGATGATCGCA-GGCTC-ACGGGTTATTTACCGGTGG 1169
Query 1269 CAACAAGCAAT-ACCTCCGAAAATGGCAATGCTGAGAAATGTTTTGGTTCT-CATCAATT 1326
|||||||| || | ||||||||||||||||||||||||| | |||| || |||||| |
Sbjct 1170 CAACAAGCGATCAG-TCCGAAAATGGCAATGCTGAGAAATATACTGGT-CTTCATCAACT 1227
Query 1327 TCCTCTACACAGTAGTGGTTCTCAATTACTCATCCGTCGGTTTCATGGTTTTAAGCTTGC 1386
|||| ||||| || |||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 1228 TCCTTTACACCGTTTTGGTTCTCAACTACTCAGCCGTCGGTTTCATGGTGTTAAGCTTGC 1287
Query 1387 ACGAAACACT-AGTCGCCTTCAAGA-GTGTATATTACATTGGAACAGTTATACCTATCGC 1444
|||||||||| | ||||| | || | |||||||||||||||||| | |||||| | |
Sbjct 1288 ACGAAACACTTAC-CGCCTACG-GAAGCGTATATTACATTGGAACAATCATACCTGTTG- 1344
Query 1445 TGT-GCTTCTTCTCAGCTAC-TTAGTTCCTGTGAAGCCTGTTA-GACCAAAGACCA-GAA 1500
| | | |||| ||||| ||| || || |||| || ||| | | ||||||| |||| | |
Sbjct 1345 TATTGATTCTCCTCAGTTACGTT-GTGCCTGCAAAACCT-TCAAGACCAAA-ACCACGGA 1401
Query 1501 AAGAAGAATAA 1511
|||| ||||||
Sbjct 1402 AAGAGGAATAA 1412
> Ahg911026 jgi|Araly1|911026|Al_scaffold_0001_1280
Length=1344
Score = 889 bits (481), Expect = 0.0
Identities = 809/964 (84%), Gaps = 36/964 (4%)
Strand=Plus/Plus
Query 565 AGAAGAAGAACCGTTTGATTCAGATGCCTTCTCTT-ATTGAGTACTTTGGTTATTGCCTC 623
|||| || ||||| ||| |||||||||| ||| || ||||||||||||||||| |||||
Sbjct 400 AGAA-AA-AACCGATTGGTTCAGATGCCATCT-TTGATTGAGTACTTTGGTTACTGCCTT 456
Query 624 TGTTGTGGAAGCCATTTCGCTGGCCCGGTTT-TCGAAATGAAAGATTATCTCGAATGGAC 682
||||| || |||||||| ||||| || |||| | |||||||||||||||||| |||||||
Sbjct 457 TGTTGCGGTAGCCATTTTGCTGGTCCTGTTTAT-GAAATGAAAGATTATCTCCAATGGAC 515
Query 683 TGAA-GAGAAAGGAATTTGGGCTGTTTCTGAAAAAGGAAAG-AGACCATCGCCTTATGGA 740
||| || ||||| ||||||| | ||| |||||| ||||| || |||||||||| ||||
Sbjct 516 CGAAGGA-AAAGGGATTTGGGATACTTCAGAAAAAAGAAAGCAG-CCATCGCCTTTTGGA 573
Query 741 GCAATGATTCGAGCTGTGTTT-CAAGCTGCGATTTGTATGGCTCTCTATCTCTATTTAGT 799
|| | || |||||| | ||| ||||||||||| || |||||||| ||||||||||||||
Sbjct 574 GCTACAATCCGAGCTAT-TTTGCAAGCTGCGATCTGCATGGCTCTGTATCTCTATTTAGT 632
Query 800 ACCTCAGTTTCCGTTAACTCGGTTCACTGAACCAGTGTACCAAGAATGGGGATTCTTGAA 859
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 633 GCCTCAGTATCCGTTAACCCGGTTCACTGAACCCGTGTACCAAGAATGGGGATTCTTG-A 691
Query 860 G-AGATTTGGTTACCAATACATGGCGGGTTTCACGGCTCGTTGGAAGTATTACTTTATAT 918
| | |||| |||| ||||||||||| || |||||||| ||||||||||||||||| || |
Sbjct 692 GAAAATTTAGTTATCAATACATGGCCGGATTCACGGCCCGTTGGAAGTATTACTTCATCT 751
Query 919 GGTCTATCTCAGAGGCTTCTATTATTATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATG 978
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 752 GGTCAATTTCAGAGGCTTCTATTATCATCTCTGGTTTGGGTTTCAGTGGTTGGACTGATG 811
Query 979 AAAC-TCAGACAAAGGCTAAATGGGACCGCGCTAAGAATGTCGATATTTTGGGGGTTGAG 1037
| | ||| ||||| ||||||||||||| || ||||| || || ||| | || |||||
Sbjct 812 ATGCTTCA-CCAAAGCCTAAATGGGACCGTGCCAAGAACGTAGACATTCTCGGTGTTGAA 870
Query 1038 CTTGCCAAGAGTGCGGTTCAGATTCCGCTTTTCTGGAACATACAAGTCAGCACATGGCTC 1097
|| || ||||| |||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 871 CTAGCTAAGAGCGCGGTTCAGATTCCACTAGTATGGAACATACAAGTCAGCACATGGCTC 930
Query 1098 CGTCACTACGTATATGAGAGAATTGTGAAGCCCGGGAAGAAAGCGGGTTTCTTCCAATTG 1157
||||||||||| ||||| ||| ||||| || ||| |||||||||||||||||||| ||
Sbjct 931 CGTCACTACGTGTATGAAAGACTTGTGCAGAACGGAAAGAAAGCGGGTTTCTTCCAGTTA 990
Query 1158 CTAGCTACGCAAACCGTCAGTGCTGTCTGGCATGGACTGTATCCTGGATACATTATATTC 1217
||||||| |||||||||||||| || ||||||||||| ||||||||||| || || |||
Sbjct 991 TTAGCTACACAAACCGTCAGTGCGGTTTGGCATGGACTATATCCTGGATATATGATGTTC 1050
Query 1218 TTTGTGCAATCAGCATTGATGATCG-ATGGTTCGAAAGCT-ATTTACCGGTGGCAACAAG 1275
||||| || ||||| |||||||||| | || || | | | |||||||||||||||||||
Sbjct 1051 TTTGTTCAGTCAGCTTTGATGATCGCA-GGCTC-ACGGGTTATTTACCGGTGGCAACAAG 1108
Query 1276 CAAT-ACCTCCGAAAATGGCAATGCTGAGAAATGTTTTGGTTCT-CATCAATTTCCTCTA 1333
| || | ||||||||||||||||||||||||| | |||| || |||||| ||||| ||
Sbjct 1109 CGATCAG-TCCGAAAATGGCAATGCTGAGAAATATACTGGT-CTTCATCAACTTCCTTTA 1166
Query 1334 CACAGTAGTGGTTCTCAATTACTCATCCGTCGGTTTCATGGTTTTAAGCTTGCACGAAAC 1393
||| || |||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 1167 CACCGTTTTGGTTCTCAACTACTCAGCCGTCGGTTTCATGGTGTTAAGCTTGCACGAAAC 1226
Query 1394 ACT-AGTCGCCTTCAAGA-GTGTATATTACATTGGAACAGTTATACCTATCGCTGT-GCT 1450
||| | ||||| | || | |||||||||||||||||| | |||||| | | | | | |
Sbjct 1227 ACTTAC-CGCCTACG-GAAGCGTATATTACATTGGAACAATCATACCTGTTG-TATTGAT 1283
Query 1451 TCTTCTCAGCTAC-TTAGTTCCTGTGAAGCCTGTTA-GACCAAAGACCA-GAAAAGAAGA 1507
||| ||||| ||| || ||||||| || || | | ||||||| ||| | || |||||
Sbjct 1284 TCTCCTCAGTTACGTT-GTTCCTGCAAAACCC-TCAAGACCAAA-ACCGCGTAAGGAAGA 1340
Query 1508 ATAA 1511
||||
Sbjct 1341 ATAA 1344
Score = 398 bits (215), Expect = 9e-110
Identities = 338/398 (85%), Gaps = 6/398 (2%)
Strand=Plus/Plus
Query 138 ATGGCTGCCTCAATCGGCGTCTCCGTCGCCGTTCTCCGTTTCCTCCTCTGTTTCGTCGCA 197
|||||||| || ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGCTTCGATCGGAGTTTCGGTCGCCGTTCTCCGTTTCCTCCTCTGTTTCGTCGCC 60
Query 198 ACGATACCAATCTCATTT-TTATGGCGATTCATCCCGAGTCGACTCGGTAAACACATATA 256
||||| || | || ||| ||| || || ||||||||||||||||||||||| | ||
Sbjct 61 ACGATTCCTGTTTC-TTTCGCCTGGAGAATCGTCCCGAGTCGACTCGGTAAACACTTGTA 119
Query 257 CT-CAGCTGCTTCTGGAGCTT-TCCTCTCTTATCTCTCCTTTGGCTTCTCCTCAAATCTT 314
| | |||||||| || | || | |||||||| || |||||||| |||||||| || ||
Sbjct 120 -TGCCGCTGCTTCAGGTG-TTCTACTCTCTTACCTTTCCTTTGGATTCTCCTCCAACCTC 177
Query 315 CACTTCCTTGTCCCAATGACGATTGGTTACGCTTCAATGGCGATTTATCGACCCTTGTCT 374
|||||||| || || |||||||| ||||| |||||||||||||||||||||||| || |
Sbjct 178 CACTTCCTCGTTCCGATGACGATCGGTTATGCTTCAATGGCGATTTATCGACCCAAGTGT 237
Query 375 GGATTCATTACTTTCTTCCTAGGCTTCGCTTATCTCATTGGCTGTCATGTGTTTTATATG 434
||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 238 GGAATCATCACTTTCTTCCTCGGTTTCGCTTATCTCATTGGCTGTCATGTGTTTTATATG 297
Query 435 AGTGGTGATGCTTGGAAAGAAGGAGGAATTGATTCTACTGGAGCTTTGATGGTATTAACA 494
||||| ||||| ||||||||||||||||||||| |||||||||| || ||||| |||||
Sbjct 298 AGTGGAGATGCGTGGAAAGAAGGAGGAATTGATGCTACTGGAGCGTTAATGGTGTTAACG 357
Query 495 CTGAAAGTGATTTCGTGTTCGATAAACTACAACGATGG 532
|||||||| || |||||| | || || ||||| |||||
Sbjct 358 CTGAAAGTTATCTCGTGTGCCATGAATTACAATGATGG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5