BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63057.1 Length=421 Score E Sequences producing significant alignments: (Bits) Value Ahg338077 jgi|Araly1|338077|fgenesh1_pg.C_scaffold_2000176 294 3e-79 > Ahg338077 jgi|Araly1|338077|fgenesh1_pg.C_scaffold_2000176 Length=429 Score = 294 bits (159), Expect = 3e-79 Identities = 218/246 (89%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 177 atTCTCCTTCCCCTTCTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTCT 235 ||||| ||| |||||| ||||| || ||||||||| | | |||||||||||||||| Sbjct 188 ATTCTGATTCTCCTTCTTCTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTCT 243 Query 236 CCTTCACCAAAATCAAAAGAAAAATCATCAACATATTGCATGATTGGCTGTTCTTTCGAG 295 | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| Sbjct 244 CATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGAG 303 Query 296 AAGTGCTTTCACCATGGAAAAAGCTCAACGATGACAACAGGCGATGTGGAAAAGTATGAC 355 ||||||||||||||||| |||||||||| ||||| ||||||| ||| |||||||| ||| Sbjct 304 AAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGAG 363 Query 356 TCATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAATGAAAACGAGGATATATAT 415 ||||||||||||||||| |||||||||||||| |||||||| |||| ||| ||||||||| Sbjct 364 TCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATAT 423 Query 416 GTCTAA 421 |||||| Sbjct 424 GTCTAA 429 Score = 217 bits (117), Expect = 6e-56 Identities = 165/186 (89%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 71 ATGATGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 130 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG 60 Query 131 GAGAACATTTTGGTTCAGGC---TCGtcatcatcatcatcatcatcat-ca--tTCTCCT 184 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 61 GAGAACATTTTGGTTCAGGCACATCGTCATCATCATCATCATCATCATTCTCCTTCTCCT 120 Query 185 TC-CC--CT--T-CTCCTTCATCTGATTTTGATGATAGTGGTTCAAAATCTCCTTCTCCT 238 || || || | |||||||| ||||||||||||||| | |||| |||||||||||||| Sbjct 121 TCTCCTTCTCCTTCTCCTTCACCTGATTTTGATGATATTTTTTCAGAATCTCCTTCTCCT 180 Query 239 TCACCA 244 ||||| Sbjct 181 ACACCA 186 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15147768833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5