BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63057.1

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg338077 jgi|Araly1|338077|fgenesh1_pg.C_scaffold_2000176           294    3e-79


> Ahg338077 jgi|Araly1|338077|fgenesh1_pg.C_scaffold_2000176
Length=429

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 218/246 (89%), Gaps = 5/246 (2%)
 Strand=Plus/Plus

Query  177  atTCTCCTTCCCCTTCTCCTTCATCT-GATTTTGATGATAGTGGTTCAAAATCTCCTTCT  235
            |||||  ||| |||||| ||||| || |||||||||  |  |  ||||||||||||||||
Sbjct  188  ATTCTGATTCTCCTTCTTCTTCA-CTAGATTTTGAT-CT--TTCTTCAAAATCTCCTTCT  243

Query  236  CCTTCACCAAAATCAAAAGAAAAATCATCAACATATTGCATGATTGGCTGTTCTTTCGAG  295
            | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct  244  CATTCACCAAAATCAAAAGAAAAATCATCATCATATTGCATGATTGGTTGTTCTTTTGAG  303

Query  296  AAGTGCTTTCACCATGGAAAAAGCTCAACGATGACAACAGGCGATGTGGAAAAGTATGAC  355
            ||||||||||||||||| |||||||||| ||||| ||||||| ||| |||||||| ||| 
Sbjct  304  AAGTGCTTTCACCATGGCAAAAGCTCAATGATGAGAACAGGCCATGAGGAAAAGTTTGAG  363

Query  356  TCATGCATGAAAAAATGTTCGAAGATATGCAACAAGAAGAATGAAAACGAGGATATATAT  415
            ||||||||||||||||| |||||||||||||| |||||||| |||| ||| |||||||||
Sbjct  364  TCATGCATGAAAAAATGCTCGAAGATATGCAATAAGAAGAAGGAAAGCGATGATATATAT  423

Query  416  GTCTAA  421
            ||||||
Sbjct  424  GTCTAA  429


 Score =  217 bits (117),  Expect = 6e-56
 Identities = 165/186 (89%), Gaps = 12/186 (6%)
 Strand=Plus/Plus

Query  71   ATGATGAACACAAAAATTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  130
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGAACACAAAGAGTGTAGCCTTGTTAATGGTGGTGATGATGGTAACAATGGGAATG  60

Query  131  GAGAACATTTTGGTTCAGGC---TCGtcatcatcatcatcatcatcat-ca--tTCTCCT  184
            ||||||||||||||||||||   ||||||||||||||||||||||||| |   |||||||
Sbjct  61   GAGAACATTTTGGTTCAGGCACATCGTCATCATCATCATCATCATCATTCTCCTTCTCCT  120

Query  185  TC-CC--CT--T-CTCCTTCATCTGATTTTGATGATAGTGGTTCAAAATCTCCTTCTCCT  238
            || ||  ||  | |||||||| ||||||||||||||| |  |||| ||||||||||||||
Sbjct  121  TCTCCTTCTCCTTCTCCTTCACCTGATTTTGATGATATTTTTTCAGAATCTCCTTCTCCT  180

Query  239  TCACCA  244
             |||||
Sbjct  181  ACACCA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15147768833


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5