BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63060.1
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924676 jgi|Araly1|924676|scaffold_200237.1 763 0.0
> Ahg924676 jgi|Araly1|924676|scaffold_200237.1
Length=488
Score = 763 bits (413), Expect = 0.0
Identities = 462/486 (95%), Gaps = 1/486 (0%)
Strand=Plus/Plus
Query 42 AGCAAATTAATTTTCACCGAGATGGCTTTCAGAATCACCAGCCAATTGCGACCGGTCGGA 101
||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1 AGCAAATTACTTTTCACCGAAATGGCTTTCAGAATCACCAGTCAATTGCGACCGGTTAGA 60
Query 102 AATCAATTTGGTGGCTCTCGTCGTTTTGCAACCACAGTCGCCGATGGCGCCAAACAAACA 161
|| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 AACCAATTTGGTGGCTCTCGTCGTTTAACAACCACGGTCGCCGATGGCGCCAAACAAACA 120
Query 162 TATAACAAGTTCTCCATAATGGGAGAGTTTGCACCAGTGGCTATAATAGGAGGTTTTGTT 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATAACAAGTTCTCCATAATGGGAGAGTTTGCACCAGTGGCTATAATAGGAGGTTTTGTT 180
Query 222 GGTTTAGCGGTACTAATGGCCGGGCATAGCCTCAAGCAACAGCTTATGCATGCACCGGCA 281
||||||||||| || |||||||| |||||| ||||||| |||||||||||||| ||||||
Sbjct 181 GGTTTAGCGGTGCTTATGGCCGGACATAGCATCAAGCAGCAGCTTATGCATGCTCCGGCA 240
Query 282 ATCAGTACAAGAAAGAATAGAAGAGCGGCTGTCGCGGAAGTCGATGATCCAGAAAACTGT 341
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 ATCAGTACAAGAAAGAATAGAAGAGCGGCTGTCGCAGAAGTCGATGATCCAGAAAATTGT 300
Query 342 GTTTCCTCTGCTGACAAATTTATCAACAAGTCTTGGTTACGTAAAGTAGGTCAGATTCAA 401
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GTTTCCTCTGCTGACAAATTTATCAACAAGTCTTGGCTACGTAAAGTAGGTCAGATTCAA 360
Query 402 GATAAATCTAAGGCAATCTTATCTGATCCCACTCGACCTAACCCATTCACCACGCCTCGA 461
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATAAGTCTAAAGCAATCTTATCTGATCCCACTCGACCTAACCCATTCACCACGCCTCGA 420
Query 462 AATGCAGAGACATTGAACTCCGTCGGCGTGGCTCCAAAGGGAATCTGAAAA-CTTTCTGA 520
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 421 AATGCAGAGACATTGAACTCCGTTGGTGTGGCTCCAAAGGGAATCTGAAAAACTTTCTGA 480
Query 521 AGAATC 526
|||||
Sbjct 481 TGAATC 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24360543963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5