BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63090.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924673 jgi|Araly1|924673|scaffold_200234.1 1399 0.0
Ahg486574 jgi|Araly1|486574|fgenesh2_kg.5__2566__AT3G61060.2 115 8e-25
> Ahg924673 jgi|Araly1|924673|scaffold_200234.1
Length=905
Score = 1399 bits (757), Expect = 0.0
Identities = 859/908 (95%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 225 CAGGGTTTTGATAACCCCATGGGTTCAGGGTTCTCTCTGTTTCAAAAGAATTTATCGTCT 284
|||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 4 CAGGGTTTTGATAACCCCATGGGTTCAGGGTTCTCTCTGTTTCACAATAGTCTATCGTCT 63
Query 285 TGTTATGGAGATCGAGATCTGTTGCAGCCTGGTTTAGGAGATTTGCCTGAAAGTTGTGTG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TGTTATGGAGATCGAGATCTGTTGCAGCCTGGTTTAGGAGATTTGCCTGAAAGTTGTGTG 123
Query 345 GCTTTGATTCTCCAGAATTTGGATCCCGTTGAGATCTGTAGATTCTCCAAGCTAAACACG 404
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 124 GCTTTGATTCTCCAGAATTTGGATCCGGTTGAGATCTGTAGATTCTCAAAGCAAAACAAA 183
Query 405 GCTTTTCATGGCGCTTCTTGGGCTGATTTCGTTTGGGAATCGAAACTTCCTCCAGATTAT 464
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCTTTTCATGGTGCTTCTTGGGCTGATTTCGTTTGGGAATCGAAACTTCCTCCAGATTAT 243
Query 465 AAATTGATTCTCGAGAAAATCCTTGGTAGTTTCCCTGATAATTTGCGTAAAAGAGACATC 524
| ||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||
Sbjct 244 AGATTGATTCTCGAGAAAATCCTTGGTGGTTTCCCGGAAAATTTGCGTAAACGAGACATC 303
Query 525 TTTACTTTTCTCTCTCGAGTTAATTCCTTCGACGAGGGCAACAAGAAAGCTTGGGTAGAT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTTACTTTTCTCTCTCGAGTTAATTCCTTCGACGAGGGCAACAAGAAAGCTTGGGTAGAT 363
Query 585 AAACGAACAGGTGGGCTCTGTTTATGCACATCAGCCAAGGGCTTATCCATAACCGGAATT 644
|||||||||||||||||||||||||||| ||| || |||||||| || |||||||||||
Sbjct 364 AAACGAACAGGTGGGCTCTGTTTATGCATATCGGCAAAGGGCTTGTCGATAACCGGAATC 423
Query 645 GATGATCGGAGATACTGGAGTCATATTCCGTCTGATGATTCTCGATTTGCTTCAGTAGCT 704
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct 424 GATGATCGGAGATACTGGAGTCATATTCCGACTGATGATTCTCGATTTTCTTCAGTGGCA 483
Query 705 TATGTTCAACAGATCTGGTGGTTTCAAGTTGATGGAGAAATTGATTTCCCATTTCCAGCT 764
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 484 TATGTTCAACAAATCTGGTGGTTTCAAGTTGATGGAGAAATCGATTTCCCATTTCCAGCA 543
Query 765 GGAACCTACAGTGTTTACTTCAGGCTTCAGCTAGGCAAACCAGGCAAGCGGTTTGGTTGG 824
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 544 GGAACCTACAGTGTTTACTTCAGGCTTCAGCTAGGCAAACCGGGCAAGCGGTTTGGTTGG 603
Query 825 AAGGTT-GTTGACACCGAACAGGTTCATGGCTGGAACATTAAACCTGTTCGTTTTCAACT 883
| |||| || || || ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 604 AGGGTTTGT-GATACAGAACAGGTTCATGGCTGGAACATCAAACCGGTTCGGTTTCAACT 662
Query 884 CTCGACTGAAGATGGTCAACATTCTTCATCTCAATGTATGTTAACCGAAGCAGGAAACTG 943
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CTCGACTGAAGATGGACAACATTCTTCATCTCAATGTATGTTAACCGAAGCAGGAAACTG 722
Query 944 GAGTCATTACCATGCTGGAGACTTTGTGGTCGGTAAATCGAAAAGTTCATCGACGAAGAT 1003
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 723 GAGTCATTACCATGCTGGAGACTTTGTGGTTGGTAAATCGAAAAATTCATCGACGAAGAT 782
Query 1004 TAAGTTCTCGATGACTCAGATTGATTGCACGCATACTAAAGGCGGGTTATGTGTAGATTC 1063
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 783 TAAGTTCTCCATGACTCAGATTGATTGCACGCATACTAAAGGCGGGCTATGTGTAGATTC 842
Query 1064 TGTAGTTGTGTATCCGAGCTCGTGTAAGGACCGGTTGATGCAGATTTAAGTTGCAAACCG 1123
||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
Sbjct 843 TGTAGTTGTGTATCCGAGCTCGTGTAAGG-----TTGACGCAGATTTAAGTTGCAAACTG 897
Query 1124 GAGTTTGG 1131
||||||||
Sbjct 898 GAGTTTGG 905
> Ahg486574 jgi|Araly1|486574|fgenesh2_kg.5__2566__AT3G61060.2
Length=1339
Score = 115 bits (62), Expect = 8e-25
Identities = 185/242 (76%), Gaps = 18/242 (7%)
Strand=Plus/Plus
Query 639 GGAATTGATGATCGGAGATACTGGAGTCATATTCCGTCTGATGATTCTC-GATTTGCT-T 696
|||||||||||||||||||||||||||||||| || | ||||| || | | || | |
Sbjct 652 GGAATTGATGATCGGAGATACTGGAGTCATATCCCAACCGATGAATC-CAGGTTC-CAGT 709
Query 697 CAGTAGCTTATGTTCAACAGATCTGGTGGTTTCAAGTTG-ATGGAGAAATTGATTTCCCA 755
|||| ||||||||||||||||| ||||||||| |||| | | ||||| |||| ||| |
Sbjct 710 CAGTTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGA-GGAGAGTTTGAGATCC-A 767
Query 756 -TTTCCAGCTGGAACCTACAGTGT-TTACTTCAGGCTTCAGCTAGGCAAACCAG-GCAAG 812
|||||| |||||| |||||| | || |||| | | ||||| || ||| || | |||
Sbjct 768 GTTTCCATCTGGAATATACAGTCTCTT-CTTCCGTATCCAGCTCGGTAAAACATCG-AAG 825
Query 813 CGGTTTGGTTGGAAGGTTGTTGACA-C-C-GAACAGGTTCATGGCTGGAACATTAAACCT 869
|| |||| ||| || | | | || | | ||||| ||||||| ||| |||| ||||||
Sbjct 826 AGGCTTGGAAGGA-GGATCT-G-CAACTCTGAACATATTCATGGATGGGACATAAAACCT 882
Query 870 GT 871
||
Sbjct 883 GT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5