BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63100.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338071 jgi|Araly1|338071|fgenesh1_pg.C_scaffold_2000170 2946 0.0
> Ahg338071 jgi|Araly1|338071|fgenesh1_pg.C_scaffold_2000170
Length=2076
Score = 2946 bits (1595), Expect = 0.0
Identities = 1861/1985 (94%), Gaps = 35/1985 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGCAGGTTGTTCGAGTTCATCATTGTTGTCGCCTACTCGAAGATTGAGGAGTGAA 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 103 ATGTTGGCAGGTTGTTCAAGTTCATCATTGTTGTCGCCGACTCGAAGATTGAGGAGTGAA 162
Query 61 GCAGTAGCAGCAACATCAGCAACAGTATCAGCGCATTTTCCCATGAACACACAGAGATTG 120
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 163 GCAGTAGCAGCAACAACAGCAACAGTATCAGCACATTTTCCTATGAACACACAGAGATTG 222
Query 121 GACTTACCATGCAGTAGTAGCTTCTCTCGCAAGGAAACTCCTTCTAGCAGACCACTTGGA 180
||||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 223 GACTTACCATGTAGTAGTAGCTTCTCTCGCAAGGAAGCTCCTTCGAACAGACCACTTGGA 282
Query 181 AGAAGCATCTCTCTTGacaacagcaacaacaacaacaacaaacCGATCGAGCGCAAGACG 240
||||||||||| ||| | ||||||||||||||||| | |||||||||||
Sbjct 283 AGAAGCATCTCACTT-------G-----ACAACAACAACAAACCGGTTGAGCGCAAGAC- 329
Query 241 AAGACCAGTGGTTGTTCGCTTAAACAGAACATAAAGCTTCCACCTTTGGCAACAACAAGA 300
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 330 --G---AGTGGTTGTTCGCTTAAGCAGAACATAAAGCTTCCACCTTTGGCAACAACAAGA 384
Query 301 GGAAATGGAGAAGGGTTTTCTTGGAACAACG---ACAACAACAACAGAGGGAAGAGTTTG 357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 385 GGAAATGGAGAAGGGTTTTCTTGGAACAACGACAACAACAACAACAGAGGGAAGAGTTTG 444
Query 358 AAGAGATTAGCTGAGGAGGACGAGTCTTGTTTGAGCAGAGCGAAGAGGACAAAATGCGAA 417
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGAGATTGGCGGAGGAAGACGAGTCTTGTTTGAGCAGAGCGAAGAGGACAAAATGCGAA 504
Query 418 AACGAAGGTGGTTTCTGGTTTGAGCATTTCACTGGCCAGGATTCTTCTTCACCAGCATTA 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 505 AACGAAGGTGGTTTCTGGTTTGAGCATTTCACTGGCCATGATTCTTCTTCACCAGCATTA 564
Query 478 CCTTTTTCTTTGACTTGTTCAGGTGATGATGAGGAAAAGGTTTGCTTTGTGCCAAGTGAA 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 565 CCTTTTTCTTTGACGTGTTCAGGTGATGATGAGGAAAAGGTTTGCTTTGTGCCTAGTGAA 624
Query 538 GTCATTTCTCAGCCTTTACCAAACTGGGTTGATTCGGTGATTACGGAGCTAGCTGGTATA 597
|||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||
Sbjct 625 GTCATTTCTCAGCCTTTACCAAACTGGGTTGATTCGGTTATCACGGAGTTGGCTGGTATA 684
Query 598 GGCGATAAGGACGTTGAGAGTAGCCTTCCTGCAGCAGTTAAGGAAGCATCTGGAGGATCA 657
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 685 GGCGATAAGGACGTTGAGAGTAGCCTTCCTGCTGCAGTTAAGGAAGCATCT---GGATCA 741
Query 658 TCTACAAGCGCATCATCCGAGAGTCGTAGCTTAAGCCATAGAGTACCAGAACCTACAAAT 717
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TCGACAAGCGCATCATCAGAGAGTCGTAGCTTAAGCCATAGAGTACCAGAACCTACAAAT 801
Query 718 GGCTCAAGGAATCCGTACTCACACCGCGGTGCAACAGAGGAAAGGACCACCGG-AA-A-C 774
|| ||||||||||| ||| |||| ||||| ||||||||||||||||||| ||| || | |
Sbjct 802 GGTTCAAGGAATCCTTACACACAGCGCGGCGCAACAGAGGAAAGGACCAGCGGAAACATC 861
Query 775 ATcaacaacaacaac-a--acaGGAACGATTTGCAGAGGGATTTCGAGCTTGTCAATTTG 831
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ATCAACAACAACAACAATCACAGGAACGATTTGCAGAGGGATTTCGAGCTTGTCAATTTG 921
Query 832 CTTACGGGATGCTTAGACGCGATCAGATCAAGAAACATAGCAGCGATTAACCATTTCATT 891
||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 922 CTTACGGGATGTTTAGAAGCGATCAGATCAAGAAACATCGCGGCGATTAACCATTTCATT 981
Query 892 GCAAGAACCGGTGATCTTGCTTCTCCTAGAGGAAGAACACCAATGACTCGCCTCATAGCT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GCAAGAACCGGTGATCTTGCTTCTCCTAGAGGAAGAACACCAATGACTCGCCTCATAGCT 1041
Query 952 TACTACATTGAAGCTTTGGCTCTAAGAGT-GGCGCGTATGTGGCCTCACATCTTCCACAT 1010
|| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1042 TATTACATTGAAGCTTTGGCACTAAGAGTCGG-GCGTATGTGGCCTCACATCTTCCACAT 1100
Query 1011 CGCACCCCCTCGTGAATTCGATAGAACTGTCGAAGATGAATCAGGAAATGCATTGAGGTT 1070
|||||| |||||||||||||| |||||||| || || ||||||||||| |||||||||||
Sbjct 1101 CGCACCACCTCGTGAATTCGACAGAACTGTTGAGGACGAATCAGGAAACGCATTGAGGTT 1160
Query 1071 CTTGAATCAAGTAACCCCAATTCCAAAGTTCATTCATTTCACAGCCAACGAGATGTTACT 1130
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1161 TTTGAATCAAGTAACCCCAATTCCAAAGTTCATCCATTTCACAGCCAATGAGATGTTACT 1220
Query 1131 CAGAGCATTTGAAGGGAAAGAGAGAGTTCACATTATTGACTTCGACATCAAGCAAGGTTT 1190
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1221 CAGAGCATTTGAAGGGAAAGAGAGGGTTCACATTATCGACTTCGACATCAAGCAAGGTTT 1280
Query 1191 ACAGTGGCCTAGCTTCTTCCAAAGCTTAGCTTCGAGAAT-AAATCCACCACACCATGTAC 1249
||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1281 ACAATGGCCAAGCTTCTTCCAAAGCTTAGCTTCCAG-ATCAAATCCACCACACCATGTAC 1339
Query 1250 GAATCACTGGGATCGGAGAATCGAAACTTGAGCTAAACGAAACCGGAGATCGCCTCCACG 1309
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1340 GCATCACTGGAATCGGAGAATCAAAACTTGAGCTAAACGAAACCGGAGATCGCCTCCACG 1399
Query 1310 GATTTGCAGAGGCGATGAATCTTCAATTCGAGTTTCATCCTGTAGTTGATAGACTCGAAG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1400 GATTTGCAGAGGCGATGAATCTTCAATTCGAGTTTCATCCTGTAGTTGATAGACTTGAAG 1459
Query 1370 ACGTTAGACTATGGATGCTTCACGTCAAAGAAGGTGAATCAGTAGCTGTAAACTGTGTCA 1429
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1460 ACGTTAGACTATGGATGCTTCACGTCAAGGAAGGTGAATCAGTAGCTGTAAACTGTGTTA 1519
Query 1430 TGCAGATGCACAAGACACTCTACGATGGAACCGGAGCAGCAATTAGGGATTTTTTGGGTT 1489
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1520 TGCAGATGCACAAGACACTCTACGACGGCACCGGAGCAGCAATTAGGGATTTTTTGGGTT 1579
Query 1490 TAATCAGAAGCACAAACCCAATAGCTCTCGTTCTTGCGGAGCAAGAAGCAGAACACAACT 1549
||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1580 TAATCAGAAGCACGAACCCAATAGCACTCGTTCTTGCGGAACAAGAAGCAGAGCACAACT 1639
Query 1550 CAGAGCAACTTGAGACACGAGTTTGTAACTCGCTAAAGTACTATTCAGCTATGTTTGATG 1609
|||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct 1640 CAGAGCAACTCGAGACACGAGTTTGTAACTCGTTAAGGTACTATTCAGCGATGTTTGATG 1699
Query 1610 CAATTCACACGAATCTTGCTACAGATAGCTTAATGAGAGTCAAAGTTGAGGAGATGTTGT 1669
| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 1700 CGATTCACACGAATCTTGCAACAGATAGCTTAATCAGAGTCAAAATTGAGGAGATGTTGT 1759
Query 1670 TTGGGAGAGAGATCAGGAACATTGTTGCGTGTGAAGGAAGTCATAGACAAGAGAGGCATG 1729
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1760 TTGGGAGAGAGATCAGGAACATTGTTGCGTGTGAAGGAAGTCATAGGCAAGAGAGGCATG 1819
Query 1730 TGGGTTTTCGTCATTGGAGGAGGATGTTGGAGCAGTTAGGGTTTCGGAGTCTTGGAGTCT 1789
|||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1820 TGGGGTTTCGTCATTGGAAGAGGATGTTGGAGCAGCTAGGGTTTCGGAGTCTTGGAGTCT 1879
Query 1790 CGGAGAGAGAGGTTTTGCAGAGTAAGATGTTGCTTAGGATGTACGGATCTGATAATGAAG 1849
|||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1880 CGGAGAGAGAGGTTATGCAGAGCAAGATGTTGCTTAGGATGTACGGAAGTGATAATGAAG 1939
Query 1850 GGTTTTTCAATGTGGAGAGGAGCGATGAAGACAACGGCGGTGAAGGCGGACGCGGCGGTG 1909
|||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||
Sbjct 1940 GGTTTTTCAATGTGGAGAGGAGCGGTGAAGACGGCGGAGGAGAAGGCGGACGCGGCGGTG 1999
Query 1910 GAGTTACTTTACGGTGGTCGGAGCAGCCACTTTATACGATCTCGGCTTGGACTACCGGAG 1969
||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
Sbjct 2000 GAGTTACTTTACGGTGGTCGGAGCAGCCACTATACACGATCTCGGCTTGGACTATCGGCG 2059
Query 1970 GGAAT 1974
| |||
Sbjct 2060 G-AAT 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5