BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63105.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924671 jgi|Araly1|924671|scaffold_200232.1                        490    3e-138


> Ahg924671 jgi|Araly1|924671|scaffold_200232.1
Length=500

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 346/382 (91%), Gaps = 18/382 (5%)
 Strand=Plus/Plus

Query  1    ATGAAAGCCACTAACACAGATTTGGGAGACGAAGCGTTTAAAGCCGTGACAAACCCGATC  60
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  100  ATGAAAGCTACTAACACAGATTTGGGAGACGAAGCGTTTAAAGCCGTGACTAACCCGATC  159

Query  61   CTTTCACAAATGGAGGAAATCATCAACACAGCTAAACATGTTGCATATCGCGTGGGAGTT  120
            ||||||||||||||| |||||||||||||| ||||||||||| |||||| ||||  ||||
Sbjct  160  CTTTCACAAATGGAGCAAATCATCAACACATCTAAACATGTTTCATATCACGTGCAAGTT  219

Query  121  ATACG-AAGTACAAATTCAGATCCTAATTTTCTTCGAGATCTTGACGAGGTAGACAAGAT  179
             |||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  220  CTACGGAA-TGCAAATTCAGATCCTAATTTTCTTCGAGATCTTGACGAGGTAGACAATAT  278

Query  180  GGGGGATGATGTCTTTGAGAAATCAAAAACTGCCCTAGACATAATGCGAAAAGCGGTTGT  239
            ||||||||||||||| |||||||||||||||||  |||||||||||||||||||| ||||
Sbjct  279  GGGGGATGATGTCTTGGAGAAATCAAAAACTGCGTTAGACATAATGCGAAAAGCGATTGT  338

Query  240  TGATGCaaaggaaaggaagaaagctagagatgaagcaataaaggaagaagaagaagc--a  297
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |
Sbjct  339  GGATGCAAAGGAAAGGAAGAAAGCAAGAGATGAAGCAATAAAGGAAGAAGAAGAAGCGCA  398

Query  298  a----g-g-aaa-gaggaag--t-aaagaagaaagcaaagaacgaagcaggagagagcaG  347
            |    | | ||| || ||||  | ||||||||||||||||||||||||||||||||||||
Sbjct  399  AAAACGAGCAAAAGAAGAAGAATTAAAGAAGAAAGCAAAGAACGAAGCAGGAGAGAGCAG  458

Query  348  TTCACACAACGTACCAACGTAA  369
            | | |||| | |||||||||||
Sbjct  459  T-C-CACA-C-TACCAACGTAA  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5