BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63110.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475037 jgi|Araly1|475037|fgenesh2_kg.2__167__AT1G63110.1 2636 0.0
Ahg471424 jgi|Araly1|471424|fgenesh2_kg.1__1378__AT1G12730.1 645 0.0
> Ahg475037 jgi|Araly1|475037|fgenesh2_kg.2__167__AT1G63110.1
Length=1719
Score = 2636 bits (1427), Expect = 0.0
Identities = 1642/1743 (94%), Gaps = 25/1743 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTTCACTCGCCGGAGAGAGAGAAGAAGAAAAGACGACGGAGAAATGGCGGAGGAG 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTTCACTCGCCGGAGAGAGAGAAGAACAAAAGACGACGGAGAAATGGCGGAGGAG 60
Query 61 CAGAAAATGAAGCAGCTAAGCCGATTCTGGATTTGGGCTTTATCTTCCATTGCTTTCCGA 120
||| || | | ||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 61 CAG--AA-G-A--AGCTATGCCGTTTCTGGATTTGGGCTTTATCTTCCGTTGCTTTCCGA 114
Query 121 TTGATCTTGATCTCCTTCCCGGGAAATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TTGATCTTGATCTCCTTCCCGGGAAATCTCAATCTCTCTTCCCGTCCGGAGGTCTCTACC 174
Query 181 CCTCTCACCAGCATTCGCCGCCTTGCTGAAGGTTATTGGTTGAAGCAGGCATCGATGTCA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 175 CCTCTCACCAGCATTCGCCGCCTTGCTGAAGGTTATTGGTTGAAGCAAGCATCAATGTCA 234
Query 241 CCATATGCAGGATCTATGTATCATGGCTCACCATTGCTGCTCTCGGTTCTTGGACCTCTC 300
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 235 CCATACGCAGGATCTATGTATCATGGCTCTCCATTGCTGCTCTCGATTCTTGGACCTCTC 294
Query 301 ACAGTTCAAAGGATTAAAGGGCAACCAAGTCACCTCTTGTGCAGCTTGGTTTTTGTTATT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACAGTTCAGAGGATTAAAGGGCAACCAAGTCACCTCTTGTGCAGCTTGGTTTTTGTTATT 354
Query 361 GCAGATATATTAAGTGCAATGCTTCTTCGAGCTATTGGTCAGAAACTCCAGATGGCTTAT 420
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 GCAGATATATTAAGTGCGATGCTTCTTCGAGGTATTGGTCAGAAACTCCAGATGGCTTAT 414
Query 421 GGACTGAATGCGAGACTACTTGGTTTTCTTAAGTCATCAAGGGATAAAGTGATCCTACCT 480
|||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 415 GGACTGAATGCGAGGCTACTCGGCTTTCTTAAGTCATCAAGAGATAAAGTGATCCTACCT 474
Query 481 TGTGGTGATATTGCTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGTGGTGATATTGCTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTG 534
Query 541 GGCTTATCAACTTCTCCCATCGAAAACCTGGCTGTCATATTGGCGCTTTTTGGAGCAGTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 535 GGCTTATCAACTTCTCCCATCGAAAATCTGGCTGTCATATTGGCGCTTTTTGGAGCAGTT 594
Query 601 ACACGACGAGTTCCTCTGGCAGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTAT 660
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 ACCCGACGAGTTCCTCTGGCTGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTAT 654
Query 661 CCTGCTACTCTGACAATTCCAATAATCTTTCTATTGGGATATGGTTTGGATGCTCCTCCT 720
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CCTGCTACTCTGACAATTCCAATAATCTTTCTATTGGGATGTGGTTTGGATGCTCCTCCT 714
Query 721 ATAAAATTGTTCCTTCAGACCAGAAGTGTAGAAAATGAGGAGAGTTCAACCTCTACTGTT 780
|| |||||||||||||||||||| ||||||||||| ||||||| ||| || |||||||||
Sbjct 715 ATTAAATTGTTCCTTCAGACCAGGAGTGTAGAAAAGGAGGAGACTTCTACATCTACTGTT 774
Query 781 TCTAAACAAGCCAAGTTGAAACAGACTACGCACCTTCCTTTCTTATGGAAAACAGTCGCA 840
|||||||||||||||||||||||||| | || | ||||||||||||||||||||||||||
Sbjct 775 TCTAAACAAGCCAAGTTGAAACAGACAATGCGCATTCCTTTCTTATGGAAAACAGTCGCA 834
Query 841 CACT-TCTTGTTCTGGGTACTTCTGTGGTCACTCTATGTGTTGATTTTATGTGCCTTATC 899
|| | ||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||
Sbjct 835 CA-TATCTTGTTCTGGGTACTTCTGTGGTCGCTCTATGTGTTGGTCTTAAGTGCTTTATC 893
Query 900 ACTGAATAAATATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTTAG 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 ACTGAATAAACATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCATTCTCAG 953
Query 960 TATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTATTCGA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 954 TATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGTCTTCGA 1013
Query 1020 CTTCTTCAGAAACTTTTTTCTGATAGTTTTACACGTAAATATTCTGTTCATGTTACTGCC 1079
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1014 CTTCTTCAGAAACTTTTTCCTGATAGTTTTCCACGTAAATATTCTGTTTATGTTACTGCC 1073
Query 1080 CTTAGCCATAAGGTTGAAACATCGGCCATGTTTCCTGGCTTTCATATACTTAGCGATCTC 1139
|||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1074 CTTAGCCATACGGTTGAAACATCGGCCATGCTTCCTAGCTTTCATATACTTAGCGATCTC 1133
Query 1140 CTCGATTCTTAAATCTTATCCTTCAGTCGGAGATTCGGCGTTATACTTGAGCTTATGGGC 1199
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1134 CTCGATTCTTAAATCTTATCCCTCAGTCGGAGATTCGGCATTATACTTGAGCTTATGGGC 1193
Query 1200 ATTGTTTGTCAATGAGTTATTAGATATGAAGTTCTCGTTCTTCCTCTTCTGTGGATATCT 1259
||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1194 ATTGTTTGTCAATGAATTAATAGATATGAAGTTCTCATTCTTCCTCTTCTGTGGATATCT 1253
Query 1260 CGGGATCTCTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAA 1319
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CGGGATTTCTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGGCGGGGAACCGGAAA 1313
Query 1320 TGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCGTGCTTTCAGATCGTTTTCGTGGT 1379
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1314 CGCAAATTTCTACTTTGGAAACGCTATCGGCTACGCATGCTTTCAGATTGTTTTCGTGGT 1373
Query 1380 TGAGAGCGTAAGCGCAATGCTAAACCATGACAGGGCGCTGAAGAGATCAAACTCAAACCA 1439
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1374 TGAGAGCGTAAGCGCAATGCTAAACCATGACAGGGCGCTGAAGAGATCTAACTCGAACCA 1433
Query 1440 TCGAGAAGTCAAGAGCTAAGCCATTGAAGGTCATTGCGCCACTTTTCTGTTACACGTAAA 1499
||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1434 TCGAGAAGTTAAGAGCTAAGCCATTGAAGGTCATTACGCCACTTTTCTATTACACGCAAA 1493
Query 1500 GAAAAGAGTTGGGTCTTTAGCTTAAAGTTGGCAACATGTGATTTGTGTGAGTAGCTTTTC 1559
|||||||||| |||||||||||||| | | | | ||| || | || | ||||||
Sbjct 1494 GAAAAGAGTTCGGTCTTTAGCTTAA--T-G--ATC-TGT--TT-GAGTCA----CTTTTC 1540
Query 1560 TTTGTTTGAGAACATCATATAAATAACAAATCTCCTGTGCCTTTCCGTTTAGAGTAACCA 1619
||||||||||||||||| |||||| |||||||||||||||||| || || |||||||| |
Sbjct 1541 TTTGTTTGAGAACATCAGATAAATGACAAATCTCCTGTGCCTTGCCATT-AGAGTAACAA 1599
Query 1620 TTAATTTGTACTTTTTACCGAGAGGTTTTAAAGTTCTTGTTTTGATCCGCAAAGCACACA 1679
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1600 TTAATTTGTACTTTCTACCGAGAGGTTTTAAAGTTCTTGCTTTGATCAGCAAAGCACACA 1659
Query 1680 ATCATCCCTATATTTGAAGTTACATCGCATGTATACAAGGTATTATCATTTGTGAATGGT 1739
||||| ||||||| |||||| |||||||||||| |||||||| | |||||||||||||
Sbjct 1660 ATCAT---TATATTTTAAGTTAGATCGCATGTATATAAGGTATTGTTATTTGTGAATGGT 1716
Query 1740 GGA 1742
|||
Sbjct 1717 GGA 1719
> Ahg471424 jgi|Araly1|471424|fgenesh2_kg.1__1378__AT1G12730.1
Length=1681
Score = 645 bits (349), Expect = 0.0
Identities = 685/842 (81%), Gaps = 43/842 (5%)
Strand=Plus/Plus
Query 605 GACGAGTTCCTCTGGCAGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTATCCTG 664
|||||||||||||||| |||||||| |||||||| |||||||| || ||||||||| | |
Sbjct 605 GACGAGTTCCTCTGGCTGCATTTGGGTTAGTCATGGCCACACACTTGTCTCTTTATTCAG 664
Query 665 CTACTCTGA-CAATTCCAATAATCTTTCTATTGGGATATGGTTTGGATGCTCCTCCTATA 723
| ||| | | | |||||| | |||||||| |||||||||||||| ||||| |||||| ||
Sbjct 665 CAACT-TTAGCGATTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTGTA 723
Query 724 AAATTGTTCCTTCAGACCAGA-AGTGTAGAAAATGAG--GAGA-GTTCAACCTCT-ACTG 778
||| ||||||||||| ||| | ||| | | |||| || | | ||||||||| | ||
Sbjct 724 AAAAAATTCCTTCAGACAAGACA-TGTTGGAGTTGAGACGACAGGATCAACCTCTGA-TG 781
Query 779 TTTCTAAACAAGCCAAGTTGAAACAGACTACGCACCTTCCTTTCTTATGGAAAACAGTCG 838
|||| ||||||| |||||||| |||||||| || | | ||||||||||| |||||||
Sbjct 782 TTTCGAAACAAGACAAGTTGACTCAGACTACACAAC-T--TTTCTTATGGAGAACAGTCT 838
Query 839 CACACTTCTTGTTCTGGGTACTT-CTGTGGTC-ACTCTATGTGTTGATTTTATGTGC--C 894
| ||| | || |||||| || ||||||| | |||||||||| ||| ||||| |
Sbjct 839 TGTATTTCGTATTTTGGGTA-TTGGTGTGGTCGA-GCTATGTGTTG-GTTT-TGTGCAGC 894
Query 895 TTATCACTGAATA-AATATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCAT 953
|||||| |||| | |||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 895 TTATCATTGAA-ACAATATGGTGGACTTGAAGAGATGTTCAAAAGGACATATGGTTTCAT 953
Query 954 TCTTAGTATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGT 1013
||| || || |||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 954 TCTCAGAATCGAAGATCTGTCCCCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGT 1013
Query 1014 ATTCGACTTCTT-CAGAAACTT-TTTTCTGATAG-TTTTACACGTAAATATTCTG-TT-C 1068
|| || || || |||||| || | | ||||||| ||||| || || |||||||| || |
Sbjct 1014 CTTTGA-TTTTTCCAGAAA-TTATCTCCTGATAGTTTTTA-ACTTATATATTCTGCTTAC 1070
Query 1069 -ATGTTACTGCCCTTAGCCATAAGGTTGAAACATCGGCCATGTTTCCTGGCTTTC-ATAT 1126
| ||| || |||||| | |||| ||||||||||| || ||||| |||||| | |
Sbjct 1071 GGGGATACCACCGTTAGCCTTCCGGTTAAAACATCGGCCCTGCTTCCTTGCTTTCGCT-T 1129
Query 1127 ACTTAGCGATCTCCTCGATTCTTAAATCTTATCCTTCAGTCGGAGATTCGGCGTTATACT 1186
| ||||| ||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 1130 ATTTAGCCTTCTCCTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACT 1189
Query 1187 TGAGCTTATGGGCATTGTTTGTCAATGAGTTATTAGATATGAAGTTCTCGTTCTTCCTCT 1246
|||| || |||||||||||||||||||| ||| ||| ||| || ||||||||| |||
Sbjct 1190 TGAGTTTCTGGGCATTGTTTGTCAATGAATTAACAGACATGGAGCACTCGTTCTTTATCT 1249
Query 1247 TCTGTGGATATCTCGGGATCT-CTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGG 1305
||||||||||| | || || | | || ||||||||||||||||||||| |||||||||||
Sbjct 1250 TCTGTGGATATATTGG-ATTTTCGCTACTCAGCCCTGTGATGCACAATATCTGGATATGG 1308
Query 1306 CGGGGAACCGGAAATGCAAA-TTTCTACTTTGGAAACGCTATCGGCTACGCGTGCTTTCA 1364
||||||| ||||||||||| ||| ||||| ||||| ||||| |||||||||||||||||
Sbjct 1309 AGGGGAACTGGAAATGCAAACTTT-TACTTCGGAAATGCTATGGGCTACGCGTGCTTTCA 1367
Query 1365 GATCGT-TTTCGTGGTTGAGA-GCGTAAGCGCAATGCTAAACCATGAC-AGGGCGCTGAA 1421
| | | ||| |||| || | | |||| ||||||||| ||||||||| ||| |||||||
Sbjct 1368 GTTTATGTTT-GTGGA-GAAAAGTGTAAACGCAATGCTCAACCATGACCAGG-CGCTGAA 1424
Query 1422 GA 1423
||
Sbjct 1425 GA 1426
Score = 460 bits (249), Expect = 1e-128
Identities = 423/505 (84%), Gaps = 19/505 (4%)
Strand=Plus/Plus
Query 85 TTCTGGATTTGGGCTTTATCTTCCATTG-CTTTCCGATTGA-TCTTGATC---TCCTTCC 139
||||||||||||||| | |||| | | ||||||||| | | |||||| | ||||
Sbjct 55 TTCTGGATTTGGGCTATGGCTTCTA-CGATTTTCCGATT-ATTATTGATCTTTTTTTTCC 112
Query 140 CGGGAAATCTCAATCTC-TCTTCCCGTCCGGAGGTCTCTACCCCTCTCACCAGCATTCGC 198
||| |||| |||| | | ||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 113 CGGAAAATATCAA-CGCATCTTCCCGTCCGGAGCTCTCCACCCCTCTCACCAGCCTTCGC 171
Query 199 CGCCTTGCTGAAGGTTATTGGTTGAAGCAGGCATCGA-TGTCACCATATGCAGGATCTAT 257
||||||||||||||||| ||||||||||||||||| | |||| ||||| ||||| || ||
Sbjct 172 CGCCTTGCTGAAGGTTACTGGTTGAAGCAGGCATC-ACTGTCGCCATACGCAGGGTCAAT 230
Query 258 GTATCATGGCTCACCATTGCTGCTCTCGGTTCTTGGACCTCTCACAGTTCAAAGGATTAA 317
|||||||||||| |||||||| ||||| |||| || ||||||||| |||| |||||| |
Sbjct 231 GTATCATGGCTCTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAATTCAGAGGATTGA 290
Query 318 AGGGCAACCAAGTCACC-TCTTGTGCAGCTTGGTTTTTGTTATTGCAGATATA-TTAAGT 375
|||||| | ||||| | | ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 291 AGGGCATTCGAGTCATCAT-TTGTGCAGCTTGGTTTTTGTTATTGCAGATATACTTA-GT 348
Query 376 GCAATGCTTCTTCGAGCTATTGGTCAGAAACTCCAGATGGCTTATGGACTGAATGCGAGA 435
|| ||||||||||||||| ||||||||| ||||| | |||||| || ||||| |||
Sbjct 349 GCGTTGCTTCTTCGAGCTACTGGTCAGAAGCTCCAAAAGGCTTACAGATTGAATTTGAGG 408
Query 436 CTACTTGGTTTTCTTAAGTCATCA-AGGGATAAAG-TGATCCTACCTTGTGGTGATATTG 493
| |||||| |||||| ||||| | ||| ||| || | ||||| |||||||| |||||||
Sbjct 409 CGACTTGGCCTTCTTACGTCATTACAGG-ATAGAGGT-ATCCTCCCTTGTGGAGATATTG 466
Query 494 CTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTGGGCTTATCAACTT 553
||||||||||| | |||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 467 CTGCTCTTGTGCACCTGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCAACTT 526
Query 554 CTCCCATCGAAAACCTGGCTGTCAT 578
|||| || ||||| ||||||||||
Sbjct 527 CTCCAATAGAAAATTTGGCTGTCAT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5