BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63120.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924667 jgi|Araly1|924667|scaffold_200228.1 1618 0.0
Ahg471427 jgi|Araly1|471427|fgenesh2_kg.1__1381__AT1G12750.2 468 5e-131
Ahg492557 jgi|Araly1|492557|fgenesh2_kg.7__1990__AT4G23070.1 222 4e-57
> Ahg924667 jgi|Araly1|924667|scaffold_200228.1
Length=996
Score = 1618 bits (876), Expect = 0.0
Identities = 954/993 (96%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 71 agagagagagaaacagagtaatggcgaacagagatgtggagagagtagggaagaaaaaca 130
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1 AGATAGAGAGAAACAGAGTAATGGCTAACAGAGATGTGGAGAGAGGAGGGAAGAAAAACA 60
Query 131 gaggagCTAATAACAATTATTTCTACGAGGAGTCTTCTGGTGAAACTCATTGGACTTCAT 190
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 61 GAGGAGCTAATAACAATTATTTCTACGATGAGTCTTCCGGTGAAACTCATTGGACTTCGT 120
Query 191 GGCTGATTCCGGCGATTGTAGTGGCAAATCTCGCTGTCTTTATCGCTGTTATGTTCGTTA 250
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 121 GGCTGATTCCGGCTATTGTAGTGGCGAATCTCGCTGTCTTTATTGCTGTTATGTTCGTTA 180
Query 251 ATGATTGTCCTAAGAAAATCACCGGACCTAACAAAGAGTGTGTTGCTAGATTCCTCGGAA 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 181 ATGATTGTCCTAAGAAAATCACCGGAGCTAACAAAGAGTGTGTTGCTAGATTCCTTGGAA 240
Query 311 GATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTTCTTCAACATTGG 370
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTTCTTCTACATTGG 300
Query 371 AGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATGAACATCAAGGATGGAGACTTC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATGAACATCAAGGATGGAGACTTC 360
Query 431 TCTCTTGTATGTGGCTTCACGCTGGTATCATTCATCTTCTTACAAACATGTTGAGTTTGA 490
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 TCTCTTGTATGTGGCTTCACGCTGGTATCATTCATCTTCTTACAAATATGTTGAGTTTGA 420
Query 491 TCTTCATTGGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGTTGATATACT 550
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 421 TCTTCATCGGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGCTGATCTACT 480
Query 551 TAATATCGGGTCTCGGTGGAAGCATACTTTCGTCGCTTTTCCTTCAAGAAAGTATCTCTG 610
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 481 TAATATCTGGTCTCGGTGGAAGCATACTTTCGTCCCTTTTCCTTCAAGAAAGTATTTCTG 540
Query 611 TTGGTGCTTCGGGTGCTCTCTTTGGACTTCTTGGAGCAATGTTATCTGAACTTCTTACCA 670
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 541 TTGGTGCTTCGGGTGCTCTCTTCGGACTTCTTGGAGCAATGTTATCTGAACTTCTCACCA 600
Query 671 ATTGGACTATCTATGCCAACAAGGCGGCTGCTCTGATCACACTTCTGTTCATCATCGCAA 730
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 ATTGGACTATCTACGCCAACAAGGCGGCTGCTCTGATCACGCTTCTGTTCATCATCGCAA 660
Query 731 TCAACTTAGCATTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTTT 790
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAACTTAGCACTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTTT 720
Query 791 TAACCGGATTCTGCCTCGGGTTTGTCCTCCTTGTCCGACCTCAGTACGGTTGGGAAGCTT 850
||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 721 TAACCGGATTCTGTCTCGGTTTTGTCCTCCTTGTTCGACCGCAGTACGGTTGGGAAGCTT 780
Query 851 CCCGCACCAACACTTCGCGAACCAAACGAAAGTATAGCATGTACCAGTACGTGCTGTTTG 910
|||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||
Sbjct 781 CCCGCACCAACACTTCACGTACCAAACGCAAGTATAGCATGTACCAGTACGCGCTGTTTG 840
Query 911 TAGTTTCAGTGGTGCTACTTGTGGTTGGGCTAACGGTTGCATTAGTGATGCTTTTCAAAG 970
|||| | ||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 841 TAGTCGCTGTGGTTCTACTTGTGGTTGGGTTAACAGTTGCATTAGTGATGCTTTTCAAAG 900
Query 971 GAGAGAATGGGAACAAACATTGCAAATGGTGTCATTACCTTAGCTGTTTCCCAACTTCTA 1030
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 GAGAGAATGGGAACAAACATTGCAAATGGTGTCATTACCTCAGCTGTTTCCCAACTTCTA 960
Query 1031 AATGGACCTGCTAatcatcatcatcatcatcat 1063
|||||||||||||||||||||||||||||||||
Sbjct 961 AATGGACCTGCTAATCATCATCATCATCATCAT 993
> Ahg471427 jgi|Araly1|471427|fgenesh2_kg.1__1381__AT1G12750.2
Length=1206
Score = 468 bits (253), Expect = 5e-131
Identities = 684/886 (77%), Gaps = 53/886 (6%)
Strand=Plus/Plus
Query 181 TGGACTTCATGGCTGATTCCGGCGATTGTAGTGGCAAATCTCGCTGTCTTTATCGCT-GT 239
||||| || ||||||| ||| | ||||| ||||| ||| || | |||| |||| | ||
Sbjct 310 TGGACGTCGTGGCTGACTCCAACAATTGTCGTGGCTAATGTCACCATCTTCATCG-TGGT 368
Query 240 TATGTTCGTTAATGATTGTCCTAAGAAAATCACCGGACCTAACAAAGAGTGTGTTGCTAG 299
|||||| | || || || ||||||| || || ||| ||||| |||| || || || |
Sbjct 369 CATGTTCATCAACGACTGCCCTAAGACAACCAGGGGAGCTAACGAAGATTGCGTGGC-AA 427
Query 300 A-TTCCTCGGAAGATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTT 358
| || ||||| || ||||||||||| || || | |||||| |||||||| ||||| ||||
Sbjct 428 AGTTTCTCGGCAGGTTCTCGTTTCAGCCGCTCAGAGAGAACCCTCTCTTGGGTCCATCTT 487
Query 359 CTTCAACATTGGAGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATG-AACATCAA 417
||||||||||||||||||||||||| ||||| ||||||||||| || || | || || ||
Sbjct 488 CTTCAACATTGGAGAAAATGGGAGCTTTGGATTGGAGGAAAGTTGTGCAAGGAA-ATGAA 546
Query 418 GGATGGAGACTTC-TCTCTTGTA-TGTGGCTTCACGCTGGTATCATTCATCTTCTTACAA 475
|||||| || | || || | | ||||||| || ||||||||| |||| ||| |||| |
Sbjct 547 AAATGGAGGCT-CATCACT-GCAATGTGGCTCCATGCTGGTATCTTTCACCTTTTTACTA 604
Query 476 ACATGTTGAGTTTGATCTTCATT-GGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGA 534
| ||||| | | ||||| | ||| |||||||||||||||||||| ||||||||| |||||
Sbjct 605 ATATGTTTAATGTGATCAT-ATTCGGTATCCGCCTTGAGCAGCAGTTTGGCTTCCTAAGA 663
Query 535 GTCGGGTTGATATACTTAATATCGGG-TCTCGGTGGAAGCATACTTTC-GTCGCTTTTCC 592
| ||| | || ||||| |||||||| | | || |||||||| || || | | || | ||
Sbjct 664 ATTGGGCTCATCTACTTGATATCGGGATTT-GGCGGAAGCATTCTCTCAG-CTCTCTACC 721
Query 593 TTCAAGAA-AGTATCTCTGTTGGTGCTTCGGGTGCTCTCTTTGGACTTC-TTGGAGCAAT 650
||||| || || |||||||||||||| |||||||||||| ||||||| | ||||||||||
Sbjct 722 TTCAA-AATAGCATCTCTGTTGGTGCCTCGGGTGCTCTCCTTGGACT-CATTGGAGCAAT 779
Query 651 GTTATCTGAACTTCTTACCAATTGGACTATCTATGCCAACAAGGCG--GCTGCTCTGATC 708
|||||| || || | | ||| ||||||||||| | | |||| | | |||| || ||
Sbjct 780 GTTATCCGAGCTGGTCATCAACTGGACTATCTACGAGAGCAAG-CTATG-TGCTTTGTTC 837
Query 709 AC-A-CTTCTGTTCATCATCGCAATCAACTTAGCATTAGGCATGCTTCCTCGGGTTGACA 766
|| | ||| ||||||||||||| || | |||||| |||| |||||||| |||||||||
Sbjct 838 ACGATCTT--GTTCATCATCGCACTCGATTTAGCAATAGGTTTGCTTCCTTGGGTTGACA 895
Query 767 ACTTTGCACACATTGGAGGGTTTTTAACCGGATTCTGCCTCGGGTTTGTCCTCCTTG-TC 825
||||||| |||||||| ||| | || || ||||| | ||| |||||| |||| || | ||
Sbjct 896 ACTTTGCTCACATTGGGGGGCTCTTGACTGGATTTTTCCTTGGGTTTATCCTACT-GATC 954
Query 826 C-GACCTCAG-TACGGTTGGGAAGCTTCCCGCA-C-CAACACT-T-CGC-GAAC---C-A 874
| | |||||| | ||| |||||| ||||||| | | | | | || | || | |
Sbjct 955 CAG-CCTCAGGTGGGGT-GGGAAGAGTCCCGCAACTCTTCTCAGTACGGTGCACGTGCCA 1012
Query 875 AA-CGAAAGTATAGCATGTACCAGTACGTGCTGTT-TGTAGTTTCAG-TGGTGCTACTTG 931
|| | |||||||| | || ||||||| || |||| | || || | | || | | | |
Sbjct 1013 AATC-AAAGTATAACCCGTGCCAGTACTTGTTGTTCTTTA-TTGCCGCTGTTT-TGGTCG 1069
Query 932 TGGTTGGGCTAACGGTTGCATTAGTGATGCTTTTCAAAGGAGAGAATGGGAACAAACATT 991
| | || |||| ||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1070 TCGCCGGTTTAACAATTGGGTTGGTGATGCTGTTCAAAGGAGAGAATGGGAACAAACATT 1129
Query 992 GCAAATGGTGTCATTACCTTAG-CTGTT-TCCCAACTTCTAAATGG 1035
|||||||||||||| ||| || ||||| ||| | |||||||||||
Sbjct 1130 GCAAATGGTGTCATCGCCT-AGACTGTTATCCTA-CTTCTAAATGG 1173
> Ahg492557 jgi|Araly1|492557|fgenesh2_kg.7__1990__AT4G23070.1
Length=957
Score = 222 bits (120), Expect = 4e-57
Identities = 387/509 (76%), Gaps = 45/509 (9%)
Strand=Plus/Plus
Query 337 AATCCTC-TCTTTGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCATTGGAATGGAG 395
||||||| || | ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 244 AATCCTCTTC-TAGGTCCTTCTTCTTCAACATTGGAGAAAATGGGAGCTTTGGATTGGAG 302
Query 396 GAAAGTAGTACATGAA-CATCAAG-GATGGAGACTTCTCT-CTTGTATGTGGCTT-CACG 451
|||| |||| || || | ||||| | |||||||| || | | ||||||||| || ||||
Sbjct 303 GAAAATAGTTCAC-AAGCGTCAAGTG-TGGAGACT-CTTTACATGTATGTGG-TTGCACG 358
Query 452 CTGGTATCATTCATCTT-CTTA-CAAACATGT-T-GAGTTTGATCTTCATTGGTA-TCCG 506
||||| | |||||| || || | ||||||||| | | || | ||||||||| | | ||
Sbjct 359 CTGGTGTTATTCAT-TTGCT-AGCAAACATGTGTTGTGTC-GC-CTTCATTGG-AGTTCG 413
Query 507 CCTTGAGCAGCAATTTGGCTTCATAAGAGTCGGGTTGATATA-CTTAATATCGGGTCTCG 565
|| |||||||| ||||| || | |||||||| ||| || ||| |||||||| ||
Sbjct 414 TCTCGAGCAGCAGTTTGGTTTTGTTCGAGTCGGGACGATCTATCTTG-TATCGGGTTTCT 472
Query 566 GTGGAAGCATACTT-TCGTCGCTT-TTCCTTCAAGAAAG-TATCTCTGTTGGTGCTTCGG 622
| || |||||| || || | | || || ||||| ||| | ||| ||||||||||| ||
Sbjct 473 GCGGGAGCATA-TTATCTT-GTTTGTTTCTTCA-GAATGCTATATCTGTTGGTGCCTCAA 529
Query 623 GTGCTCTCTTTGGACTTCTT-GGAGCAATGTTATCTGAACTTCTTAC-CAATTGGACTAT 680
||||| | ||||| ||| || |||||||||||||||||| || ||| |||||||||||
Sbjct 530 GTGCTTTGTTTGGCCTT-TTAGGAGCAATGTTATCTGAA-TTGTTAATCAATTGGACTA- 586
Query 681 CT-ATGCCAACAAGGCG-GCTG-CTCT-GATCACACTTCTGTTCATCATCGCAATCAACT 736
|| ||| ||| |||| | | || || | | | | ||| || | || | | | ||||
Sbjct 587 CTTATGACAATAAGG-GTG-TGGCTTTAG-TAATGCTTTTGGTGATTGTTGGTGTTAACT 643
Query 737 TAGCATTAGGCATGCTTCCTCGGGTTGACAACTTTGCACACATTGGAGGGTTT-TTAACC 795
||| |||||| | ||||||| || || || ||||| ||||||||||| ||| ||| |
Sbjct 644 TAGGATTAGGAACACTTCCTCCTGTCGATAATTTTGCTCACATTGGAGG-TTTCTTAGGC 702
Query 796 GGATT-CTGCCTCGGGTTTGTCCTCCTTG 823
|| || || | |||| ||| | ||| |||
Sbjct 703 GGTTTTCTTC-TCGGTTTTCTTCTC-TTG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5