BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63140.2 Length=1296 Score E Sequences producing significant alignments: (Bits) Value Ahg924666 jgi|Araly1|924666|scaffold_200227.1 1742 0.0 Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2 1700 0.0 > Ahg924666 jgi|Araly1|924666|scaffold_200227.1 Length=1186 Score = 1742 bits (943), Expect = 0.0 Identities = 1110/1191 (93%), Gaps = 9/1191 (1%) Strand=Plus/Plus Query 3 TTTTCCAACCAAACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCT 62 |||| ||||| ||||| |||||||| ||||||| ||||||||||||| |||| ||||||| Sbjct 1 TTTTTCAACC-AACAATAACAATGGCGAACCATATTCAACATTCCTTGACCACCATTCCT 59 Query 63 AAACCGGATCTAATCAAAGAAGAACAACGTTATCACGAAGATACGGTGAGCTTGCAAGCG 122 ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| Sbjct 60 AAACCGGATCTAATCAAAGAAGAACAACGTTTTGACGAAGATACGGTGAGTTTGCAAGCG 119 Query 123 GAGAGGATTTTGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGC 182 |||||||| |||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct 120 GAGAGGATCTTGCATGCCACGGCCTTCCCCATGGTTCTCAAAACCGCTTTGGAGCTTGGC 179 Query 183 GTTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCT 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 180 ATTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATAGCT 239 Query 243 CTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTA 302 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 240 TTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCGGTATTACTGGACCGGATGCTG 299 Query 303 GTTTTGTTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATT 362 ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 300 GTTTTACTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGAGAACATT 359 Query 363 GGAAGTAGAAAGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAAC 422 |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 360 GGAAGTAGAAAGACTGAGAGGGTCTATGCATCTGAACCGGTTTGCAAGTTTTTCTTGAAC 419 Query 423 CGCGGAGATGGCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGT 482 ||||||||||||| ||| |||||||||||||||||||||||| ||||| | |||| |||| Sbjct 420 CGCGGAGATGGCTCGGGGTCTCTCGCCACTTTGTTCATGGTATTCCAAAGCGAAGGCTGT 479 Query 483 ATGAAGCCTTGGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCT 542 |||||| |||||| |||||||||||| |||||||||||||||| |||||||||| || | Sbjct 480 ATGAAGACTTGGGCACATCTCAAAGATGTGATATTAGAAGGAAAGGATGCATTCAGCTTT 539 Query 543 GCTCATGGCATGAGGTTTTTCGAACT-CATTGGTTCGAACGAACAATTCGCTGAAATGTT 601 ||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| ||||| Sbjct 540 GCTCATGGCATGAGGATTTTCGAA-TACATTGGTTCGAACGAACAACTCGCTGAGATGTT 598 Query 602 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAA 661 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 599 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAAAAGTTTACAA 658 Query 662 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGG 721 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 659 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACCGTCATAGG 718 Query 722 TCAAGTGACTTCCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTT 781 || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 719 TCTAGTGACTTCCAAGTATCCTCATATTACAGGCATCAATTTCGATCTAGCATCGATTTT 778 Query 782 AGCCCATGCTCCT-TTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAA 840 || |||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 779 AGTCCATGCTCATCTTTA-TAAAGGAGTGGAGCATGTTTCGGGAGATATGTTTAAAGAAA 837 Query 841 TTCCAAAAGGAGATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATT 900 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 838 TTCCAAAAGGAGATGCCATCTTCATGAAGTGGATTCTACATGATTGGACTGACGAAGATT 897 Query 901 GTGTAAAGATCCTAAAAAATTATTGGAAAAGTCT-TCCCGAGAAAGGAAAAGTGATAATA 959 |||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 898 GTGTAAAGATTCTAAAAAATTGTTGGAAAAGTCTATCC-GAGAAAGGAAAAGTGATAATA 956 Query 960 GTCGAGGTGGTTACGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTC 1019 |||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||||||| Sbjct 957 GTCGAGATGGTTACGCCGGAGGAACCAAAGATCAACGACGTTTCTTCTAACGTTGTGTTA 1016 Query 1020 GGTATGGACATGCTGATGTTAGCAGTAA-GCTCAGGTGGTAAGGAGAGGTCTCTTTCCCA 1078 | ||||||||| |||||||| || || |||||||||||||||||||| ||||||| || Sbjct 1017 GCCATGGACATGTTGATGTTAACAC-AATGCTCAGGTGGTAAGGAGAGGACTCTTTCACA 1075 Query 1079 ATTCGAGACTCTAGCCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1138 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1076 ATTTGAGACTCTAGCCTCTGATTCTGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1135 Query 1139 CTCATATAGTGTTATCGAATTACACAAATAGGCTCGACATTTTACCAACAA 1189 ||||||||| |||||||||||||||||||||| || ||||||||||||||| Sbjct 1136 CTCATATAGCGTTATCGAATTACACAAATAGGTTCAACATTTTACCAACAA 1186 > Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2 Length=1178 Score = 1700 bits (920), Expect = 0.0 Identities = 1093/1179 (93%), Gaps = 2/1179 (0%) Strand=Plus/Plus Query 14 AACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCTAAACCGGATCT 73 ||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||| | Sbjct 1 AACAATAACAATGGCGAACCATATTCAACATTCCTTAACCACCATTCCTAAACCGGATTT 60 Query 74 AATCAAAGAAGAACAACG-TTATCACGAAGATACGGTGAGCTTGCAAGCGGAGAGGATTT 132 ||||||||||||| |||| || | |||||||||||||||||||||||||||||||||| | Sbjct 61 AATCAAAGAAGAAGAACGATT-TGACGAAGATACGGTGAGCTTGCAAGCGGAGAGGATCT 119 Query 133 TGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGCGTTATCGACA 192 ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 120 TGCATGCCATGGCCTTCCCCATGGTTCTCAAAGCCGCTTTGGAGCTTGGCGTTATCGACA 179 Query 193 TGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCTCTTGGTCTCC 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 180 TGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCTCTTGGCCTTC 239 Query 253 CAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTAGTTTTGTTAG 312 |||||||||| |||||||||||||||||||||||||| || |||||||| ||||| |||| Sbjct 240 CAACCAAGCCGACCAATCCGGAGGCACCAGTATTGCTAGATCGGATGCTGGTTTTATTAG 299 Query 313 CCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATTGGAAGTAGAA 372 |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| Sbjct 300 CCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAAACGGAGAGGACATCGGAAGTAGAA 359 Query 373 AGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAACCGCGGAGATG 432 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 360 AGACGGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAACCGTGGAGATG 419 Query 433 GCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGTATGAAGCCTT 492 ||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||| || Sbjct 420 GCTCGGGGTCTCTCGCCACTTTGTTCATGGTACTCCAAGGCGAAGTCTGTTTGAAGAGTT 479 Query 493 GGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCTGCTCATGGCA 552 ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 480 GGGCACATCTCAAAGATGTGATATTAGAAGGAAAAGATGCATTCAGCTCTGCTCATGGCA 539 Query 553 TGAGGTTTTTCGAACTCATTGGTTCGAACGAACAATTCGCTGAAATGTTTAACCGGGCAA 612 ||| ||||||||||| |||||||||||| |||||||| ||||| |||||||||| |||| Sbjct 540 TGAAGTTTTTCGAACACATTGGTTCGAATGAACAATTTGCTGAGATGTTTAACCACGCAA 599 Query 613 TGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGAAG 672 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGTCGGAAGCTTCCAGATTAATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGAAG 659 Query 673 ATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGGTCAAGTGACTT 732 |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| Sbjct 660 ATGTAAATACTTTGGTGGATGTGGGAGGGGGAATTGGAACCGTCATAGGTCTAGTGACTT 719 Query 733 CCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTTAGCCCATGCTC 792 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 720 CCAAGTATCCTCATATTAAAGGCGTCAATTTCGATCTAGCATCGGTTTTAGTCCATGCTC 779 Query 793 CTTTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAGGAG 852 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTCTTCATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAGGAG 839 Query 853 ATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATTGTGTAAAGATCC 912 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 840 ATGCCATCTTCATGAAGTGGATACTACATGATTGGACTGACGAAGATTGTGTAAAGATTC 899 Query 913 TAAAAAATTATTGGAAAAGTCTTCCCGAGAAAGGAAAAGTGATAATAGTCGAGGTGGTTA 972 ||||||| | ||||||||||||| || | |||||||| ||||||||||||||| |||||| Sbjct 900 TAAAAAACTGTTGGAAAAGTCTTTCCAATAAAGGAAAGGTGATAATAGTCGAGATGGTTA 959 Query 973 CGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTCGGTATGGACATGC 1032 |||| | |||||||||||| ||||| |||||||||||| ||||||| | ||||||||| Sbjct 960 CGCCAGTGGAACCAAAGATCAACGATATTTCTTCTAACGTTGTGTTAGCCATGGACATGT 1019 Query 1033 TGATGTTAGCAGTAAGCTCAGGTGGTAAGGAGAGGTCTCTTTCCCAATTCGAGACTCTAG 1092 |||||||| || |||||||||||||||||||||| ||||||| ||||| |||||||||| Sbjct 1020 TGATGTTAACACAAAGCTCAGGTGGTAAGGAGAGGACTCTTTCACAATTTGAGACTCTAG 1079 Query 1093 CCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTTCTCATATAGTGTTA 1152 | |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1080 CTTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGTTTTCTCATATAGCGTTA 1139 Query 1153 TCGAATTACACAAATAGGCTCGACATTTTACCAACAAAA 1191 |||||||||||||||| || |||||||||||| |||| Sbjct 1140 TCGAATTACACAAATAATTTCAACATTTTACCAATAAAA 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48454227507 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5