BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63140.2
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924666 jgi|Araly1|924666|scaffold_200227.1 1742 0.0
Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2 1700 0.0
> Ahg924666 jgi|Araly1|924666|scaffold_200227.1
Length=1186
Score = 1742 bits (943), Expect = 0.0
Identities = 1110/1191 (93%), Gaps = 9/1191 (1%)
Strand=Plus/Plus
Query 3 TTTTCCAACCAAACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCT 62
|||| ||||| ||||| |||||||| ||||||| ||||||||||||| |||| |||||||
Sbjct 1 TTTTTCAACC-AACAATAACAATGGCGAACCATATTCAACATTCCTTGACCACCATTCCT 59
Query 63 AAACCGGATCTAATCAAAGAAGAACAACGTTATCACGAAGATACGGTGAGCTTGCAAGCG 122
||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 60 AAACCGGATCTAATCAAAGAAGAACAACGTTTTGACGAAGATACGGTGAGTTTGCAAGCG 119
Query 123 GAGAGGATTTTGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGC 182
|||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 120 GAGAGGATCTTGCATGCCACGGCCTTCCCCATGGTTCTCAAAACCGCTTTGGAGCTTGGC 179
Query 183 GTTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 ATTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATAGCT 239
Query 243 CTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTA 302
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 240 TTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCGGTATTACTGGACCGGATGCTG 299
Query 303 GTTTTGTTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATT 362
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GTTTTACTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGAGAACATT 359
Query 363 GGAAGTAGAAAGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAAC 422
|||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 360 GGAAGTAGAAAGACTGAGAGGGTCTATGCATCTGAACCGGTTTGCAAGTTTTTCTTGAAC 419
Query 423 CGCGGAGATGGCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGT 482
||||||||||||| ||| |||||||||||||||||||||||| ||||| | |||| ||||
Sbjct 420 CGCGGAGATGGCTCGGGGTCTCTCGCCACTTTGTTCATGGTATTCCAAAGCGAAGGCTGT 479
Query 483 ATGAAGCCTTGGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCT 542
|||||| |||||| |||||||||||| |||||||||||||||| |||||||||| || |
Sbjct 480 ATGAAGACTTGGGCACATCTCAAAGATGTGATATTAGAAGGAAAGGATGCATTCAGCTTT 539
Query 543 GCTCATGGCATGAGGTTTTTCGAACT-CATTGGTTCGAACGAACAATTCGCTGAAATGTT 601
||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| |||||
Sbjct 540 GCTCATGGCATGAGGATTTTCGAA-TACATTGGTTCGAACGAACAACTCGCTGAGATGTT 598
Query 602 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAA 661
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAAAAGTTTACAA 658
Query 662 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGG 721
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 AGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACCGTCATAGG 718
Query 722 TCAAGTGACTTCCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTT 781
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 719 TCTAGTGACTTCCAAGTATCCTCATATTACAGGCATCAATTTCGATCTAGCATCGATTTT 778
Query 782 AGCCCATGCTCCT-TTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAA 840
|| |||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 AGTCCATGCTCATCTTTA-TAAAGGAGTGGAGCATGTTTCGGGAGATATGTTTAAAGAAA 837
Query 841 TTCCAAAAGGAGATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATT 900
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 838 TTCCAAAAGGAGATGCCATCTTCATGAAGTGGATTCTACATGATTGGACTGACGAAGATT 897
Query 901 GTGTAAAGATCCTAAAAAATTATTGGAAAAGTCT-TCCCGAGAAAGGAAAAGTGATAATA 959
|||||||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 898 GTGTAAAGATTCTAAAAAATTGTTGGAAAAGTCTATCC-GAGAAAGGAAAAGTGATAATA 956
Query 960 GTCGAGGTGGTTACGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTC 1019
|||||| |||||||||| |||||||||||||| |||||| ||||||||||| |||||||
Sbjct 957 GTCGAGATGGTTACGCCGGAGGAACCAAAGATCAACGACGTTTCTTCTAACGTTGTGTTA 1016
Query 1020 GGTATGGACATGCTGATGTTAGCAGTAA-GCTCAGGTGGTAAGGAGAGGTCTCTTTCCCA 1078
| ||||||||| |||||||| || || |||||||||||||||||||| ||||||| ||
Sbjct 1017 GCCATGGACATGTTGATGTTAACAC-AATGCTCAGGTGGTAAGGAGAGGACTCTTTCACA 1075
Query 1079 ATTCGAGACTCTAGCCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1138
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 ATTTGAGACTCTAGCCTCTGATTCTGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTT 1135
Query 1139 CTCATATAGTGTTATCGAATTACACAAATAGGCTCGACATTTTACCAACAA 1189
||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 1136 CTCATATAGCGTTATCGAATTACACAAATAGGTTCAACATTTTACCAACAA 1186
> Ahg475033 jgi|Araly1|475033|fgenesh2_kg.2__163__AT1G63140.2
Length=1178
Score = 1700 bits (920), Expect = 0.0
Identities = 1093/1179 (93%), Gaps = 2/1179 (0%)
Strand=Plus/Plus
Query 14 AACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCTAAACCGGATCT 73
||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 1 AACAATAACAATGGCGAACCATATTCAACATTCCTTAACCACCATTCCTAAACCGGATTT 60
Query 74 AATCAAAGAAGAACAACG-TTATCACGAAGATACGGTGAGCTTGCAAGCGGAGAGGATTT 132
||||||||||||| |||| || | |||||||||||||||||||||||||||||||||| |
Sbjct 61 AATCAAAGAAGAAGAACGATT-TGACGAAGATACGGTGAGCTTGCAAGCGGAGAGGATCT 119
Query 133 TGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGCGTTATCGACA 192
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 120 TGCATGCCATGGCCTTCCCCATGGTTCTCAAAGCCGCTTTGGAGCTTGGCGTTATCGACA 179
Query 193 TGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCTCTTGGTCTCC 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 180 TGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCTCTTGGCCTTC 239
Query 253 CAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTAGTTTTGTTAG 312
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct 240 CAACCAAGCCGACCAATCCGGAGGCACCAGTATTGCTAGATCGGATGCTGGTTTTATTAG 299
Query 313 CCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATTGGAAGTAGAA 372
|||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 300 CCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAAACGGAGAGGACATCGGAAGTAGAA 359
Query 373 AGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAACCGCGGAGATG 432
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 AGACGGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAACCGTGGAGATG 419
Query 433 GCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGTATGAAGCCTT 492
||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 420 GCTCGGGGTCTCTCGCCACTTTGTTCATGGTACTCCAAGGCGAAGTCTGTTTGAAGAGTT 479
Query 493 GGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCTGCTCATGGCA 552
||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GGGCACATCTCAAAGATGTGATATTAGAAGGAAAAGATGCATTCAGCTCTGCTCATGGCA 539
Query 553 TGAGGTTTTTCGAACTCATTGGTTCGAACGAACAATTCGCTGAAATGTTTAACCGGGCAA 612
||| ||||||||||| |||||||||||| |||||||| ||||| |||||||||| ||||
Sbjct 540 TGAAGTTTTTCGAACACATTGGTTCGAATGAACAATTTGCTGAGATGTTTAACCACGCAA 599
Query 613 TGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGAAG 672
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTCGGAAGCTTCCAGATTAATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGAAG 659
Query 673 ATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGGTCAAGTGACTT 732
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 660 ATGTAAATACTTTGGTGGATGTGGGAGGGGGAATTGGAACCGTCATAGGTCTAGTGACTT 719
Query 733 CCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTTAGCCCATGCTC 792
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 720 CCAAGTATCCTCATATTAAAGGCGTCAATTTCGATCTAGCATCGGTTTTAGTCCATGCTC 779
Query 793 CTTTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAGGAG 852
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTTCATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAGGAG 839
Query 853 ATGCCATCTTCATGAAATGGATACTACATGATTGGACTGACGAAGATTGTGTAAAGATCC 912
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 ATGCCATCTTCATGAAGTGGATACTACATGATTGGACTGACGAAGATTGTGTAAAGATTC 899
Query 913 TAAAAAATTATTGGAAAAGTCTTCCCGAGAAAGGAAAAGTGATAATAGTCGAGGTGGTTA 972
||||||| | ||||||||||||| || | |||||||| ||||||||||||||| ||||||
Sbjct 900 TAAAAAACTGTTGGAAAAGTCTTTCCAATAAAGGAAAGGTGATAATAGTCGAGATGGTTA 959
Query 973 CGCCCGAGGAACCAAAGATTAACGACATTTCTTCTAACATTGTGTTCGGTATGGACATGC 1032
|||| | |||||||||||| ||||| |||||||||||| ||||||| | |||||||||
Sbjct 960 CGCCAGTGGAACCAAAGATCAACGATATTTCTTCTAACGTTGTGTTAGCCATGGACATGT 1019
Query 1033 TGATGTTAGCAGTAAGCTCAGGTGGTAAGGAGAGGTCTCTTTCCCAATTCGAGACTCTAG 1092
|||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 1020 TGATGTTAACACAAAGCTCAGGTGGTAAGGAGAGGACTCTTTCACAATTTGAGACTCTAG 1079
Query 1093 CCTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGCCTTCTCATATAGTGTTA 1152
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1080 CTTCTGATTCGGGTTTTCTTCGTTGTGAAATCATTTGTCATGTTTTCTCATATAGCGTTA 1139
Query 1153 TCGAATTACACAAATAGGCTCGACATTTTACCAACAAAA 1191
|||||||||||||||| || |||||||||||| ||||
Sbjct 1140 TCGAATTACACAAATAATTTCAACATTTTACCAATAAAA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5