BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63160.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475032 jgi|Araly1|475032|fgenesh2_kg.2__162__AT1G63160.1 1868 0.0
> Ahg475032 jgi|Araly1|475032|fgenesh2_kg.2__162__AT1G63160.1
Length=1254
Score = 1868 bits (1011), Expect = 0.0
Identities = 1180/1258 (94%), Gaps = 26/1258 (2%)
Strand=Plus/Plus
Query 16 CCAAATCTCACCGGTCGGAGATTCCTTCTCTTCCGACTGATAAT---GGCGTCTTCTTCA 72
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CCAAATCTCACCGGTCGGAGATTCCTTCTCTTCCGACTGATAATGGCGGCGTCTTCTTCT 60
Query 73 TCAACCTCTACCGGTGACGGATACAATGAA-CCATGGGTGGAGAAATACAGGCCGAGCAA 131
||||||||| ||| | |||||||||| || ||||||||||||||||||||||| |||||
Sbjct 61 TCAACCTCTTCCGACGGCGGATACAAT-AACCCATGGGTGGAGAAATACAGGCCTAGCAA 119
Query 132 AGTAGTCGATATCGTTGGAAACGAAGACGCCGTCTCCAGACTTCAAGTCATTGCTCGCGA 191
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTAGTTGATATCGTTGGAAACGAAGACGCCGTCTCCAGACTTCAAGTCATTGCTCGCGA 179
Query 192 CGGCAACATGCCTAATCTTATCCTTTCCGGTCCTCCTGGAACAGGTAAAACCACAAGCAT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGCAACATGCCTAATCTTATCCTTTCCGGTCCTCCTGGAACAGGTAAAACCACAAGCAT 239
Query 252 TTTGGCTCTTGCTCATGAGCTCCTTGGCACGAATTACAAGGAGGCTGTTCTGGAGTTGAA 311
||||||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||||||
Sbjct 240 TTTGGCTCTTGCTCACGAGCTTCTTGGCCCGAATTATAAGGAGGCTGTTCTTGAGTTGAA 299
Query 312 TGCATCTGATGATAGGGGTATTGATGTTGTAAGGAACAAAATTAAGATGTTTGCGCAGAA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGCATCTGATGATAGGGGTATTGATGTTGTAAGGAACAAAATTAAGATGTTTGCGCAGAA 359
Query 372 GAAAGTAACACTTCCTCCAGGGCGTCATAAGGTTGTTATCCTAGATGAAGCTGACAGTAT 431
|||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct 360 GAAAGTAACACTTCCTCCAGGGCGTCATAAGGTTGTCATTCTGGATGAAGCTGACAGCAT 419
Query 432 GACATCTGGAGCACAACAAGCATTGAGGAGAACGATTGAAATCTATTCGAACTCTACGCG 491
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 420 GACATCTGGAGCACAACAAGCATTGAGGAGAACGATTGAAATCTATTCGAATTCAACACG 479
Query 492 GTTTGCACTTGCTTGTAATACATCAGCCAAGATTATTGAGCCCATTCAGAGTAGATGTGC 551
||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTGCACTTGCTTGCAATACGTCATCCAAGATTATTGAGCCCATTCAGAGTAGATGTGC 539
Query 552 CTTAGTTCGATTCTCTAGATTATCTGATCAGCAGATACTAGGCCGTCTCTTGGTGGTGGT 611
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CTTGGTTCGATTCTCTAGATTATCTGATCAGCAGATACTAGGCCGTCTTTTGGTGGTGGT 599
Query 612 TGCAGCAGAGAAAGTTCCGTATGTGCCTGAAGGCCTTGAGGCGATAATCTTTACAGCTGA 671
|| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 TGAAGCAGAGAATGTTCCGTATGTACCCGAAGGCCTTGAGGCGATAATCTTTACAGCTGA 659
Query 672 TGGTGACATGAGGCAAGCTCTGAACAACTTGCAAGCCACATTCAGCGGGTTTTCG-TTTG 730
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 660 TGGTGACATGAGGCAAGCTCTGAACAACTTGCAAGCCACATTCAGCGGGTTT-CGGTTTG 718
Query 731 TCAACCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAACA 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCAACCAAGAAAACGTCTTCAAGGTCTGTGACCAGCCTCACCCGCTTCATGTCAAGAACA 778
Query 791 TTGTTCGCAATGTGTTGGAAAGTAAGTTTGAC-ATCGCCTGTGACGGCTTAAAGCAGCTC 849
||||||| |||||||||||||||||||||||| || || ||| |||| |||||||| |||
Sbjct 779 TTGTTCGTAATGTGTTGGAAAGTAAGTTTGACGAT-GCTTGTCACGGTTTAAAGCAACTC 837
Query 850 TATGATTTGGGCTACTCTCCAACCGACATTATCACAACGCTTTTCCGTATAATAAAGAAT 909
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATGATCTGGGCTACTCTCCAACCGACATTATCACAACGCTTTTCCGTATAATAAAGAAT 897
Query 910 TACGATATGGCTGAGTATCTGAAACTTGAGTTCATGAAGGAAACTGGATTTGCGCATATG 969
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TACGATATGGCTGAGTATCTGAAACTCGAGTTCATGAAGGAAACTGGATTTGCGCATATG 957
Query 970 AGAATCTGTGATGGAGTTGGATCTTATCTTCAGCTATGTGGTCTTCTGGCTAAGTTATCC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGAATCTGTGATGGAGTTGGATCTTATCTTCAGCTATGTGGTCTTCTGGCTAAGTTATCC 1017
Query 1030 ATTGTTCGTGAAACAGCGAAAGCACCTTAAGTTAGGTAACTTCCA--CT-C-A-TC-TCT 1083
|||| ||||||||||||||||||||||||||||||||||||| || || | | || |||
Sbjct 1018 ATTGCTCGTGAAACAGCGAAAGCACCTTAAGTTAGGTAACTTTCAGTCTTCCACTCATCT 1077
Query 1084 --AGTGATGAACTGGTGGCCGGTCTATGTTTAAACCAAGTTGGTTAAATCTCGTTGTTTG 1141
|||||||||| | || | ||| |||||||||||| | |||||||| |||||||||||
Sbjct 1078 GTAGTGATGAACCGTTGACTGGTTTATGTTTAAACCGATTTGGTTAACGCTCGTTGTTTG 1137
Query 1142 AGAATTCGGATAGATGTTGGAACTTCCATGCTG-TATTGCTCTGTTTTCTAGATTTGAAT 1200
||||||||||||||| ||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 1138 AGAATTCGGATAGATCTTGGAACTTCCTTGCTGCT-TTACTCTGTTTTCTAGATTTGAAT 1196
Query 1201 TGCTTGTGAATGTTTCTGAATATTA------A-GCTTAATCCTAACCAGTTTGGTATA 1251
|||||||||||||| ||||||||| | ||||||||||||||| |||||||||
Sbjct 1197 GGCTTGTGAATGTTTATGAATATTATCTTTGAAGCTTAATCCTAACCAATTTGGTATA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5