BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63170.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924663 jgi|Araly1|924663|scaffold_200224.1 1803 0.0
Ahg471429 jgi|Araly1|471429|fgenesh2_kg.1__1383__AT1G12760.2 758 0.0
> Ahg924663 jgi|Araly1|924663|scaffold_200224.1
Length=1163
Score = 1803 bits (976), Expect = 0.0
Identities = 1109/1169 (95%), Gaps = 25/1169 (2%)
Strand=Plus/Plus
Query 202 ACTTTGAAAAGAGAAAGCAAAATGTCAAGAGAGACGACGACGGAAGCAACGCCTTTGATT 261
|||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ACTTTGAAGAGAGAGAG-AAAATGTCAACAGAGACGACGACGGAAGCAACGCCTTTGATT 59
Query 262 TTAACCGACGGAGGAGGAGGAAGGAGATCGGTGAGAAGACAAGGGTTAAGAGAAGCGGCG 321
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TTAACCGACGGCGGAGGAGGAGGGAGATCGGTGAGGAGACAAGGGTTAAGAGAAGCGGCG 119
Query 322 AGGTTACTAAGACATGCAAGTAGCGGGAGAATGATGATGAGAGAGCCATCGATGCTTGTT 381
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 120 AGGTTACTAAGACATGCAAGTAGCGGAAGAATGATGATGAGAGAACCATCGATGCTTGTT 179
Query 382 CGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAAAGCGATTGGGCTTATTCGAAACCT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAAAGCGATTGGGCTTATTCGAAACCT 239
Query 442 GTAGTGGTTTTGGATTTCGTTTGGAATCTTGCTTTTGTCGTTGTTGCTACAGCTGTTTTG 501
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GTAGTGGTTTTGGATTTCGTTTGGAATCTTGCTTTTGTCGCCGTTGCTACAGCTGTTTTG 299
Query 502 GTACTTAGCAGCGATGAGAATCCGAATATGCCTCTTAGGGTTTGGATTATTGGGTATGGG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTACTTAGCAGCGATGAGAATCCGAATATGCCTCTTAGGGTTTGGATTATTGGGTATGGG 359
Query 562 TTGCAATGTATGATGCATATGGTTTGTGTTTGTGTTGAGTATCGTAGGAGGAATAGTAGA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCAATGTATGATGCATATGGTTTGTGTTTGTGTTGAGTATCGTAGGAGGAATAGTAGA 419
Query 622 AGAAGAAGAGATTTGAGTCCAAGATCTAGCtcttcttcttcttcttcttcttcttctATG 681
|||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 420 AGAAGAAGAGATATGAGTCCAAGATCTAG-----------------C-TCTTCTTCTATG 461
Query 682 GATGAAGAAGAAGGTTTGGGTTTGAGTAGAAACTCAGATGAACGTTACTTGGAGCTAGGT 741
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 462 GAGGAAGAAGATGGTTTGGGTTTGAGTAGAAACTCAGATGATCGTTACTTGGAGCTAGGT 521
Query 742 CAATTAGAGAATGAAAACAATAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATC 801
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 522 CAATTAGAGAATGAAAACAACAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATC 581
Query 802 TCATTTATATGGTGGGTTATTGGATTTTATTGGGTATCTTCTGGTGGTCAAGAGTTAGCA 861
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 582 TCATTTATATGGTGGGTTATTGGATTCTACTGGGTATCTTCTGGTGGCCAAGAGTTAGCG 641
Query 862 CAAGGATCCCCACAGCTTTATTGGTTGTGTATAGTCTTTCTTGGTTTCGATGTGTTCTTT 921
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 642 CAAGGATCCCCTCAGCTTTATTGGTTATGTATAGTCTTTCTTGGTTTCGATGTGTTCTTT 701
Query 922 GTTGTTTTCTGCGTTGCATTGGCTTGTGTTATCGGCATTGCTGTTTGCTGCTGCTTGCCT 981
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 702 GTGGTTTTCTGCGTTGCATTGGCTTGTGTTATTGGCATTGCTGTTTGCTGCTGCTTGCCT 761
Query 982 TGCATCATTGCAGTTCTATACGCCGTAGCAGAACAGGAAGGAGCTTCGAAAGAAGACATT 1041
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 762 TGCATCATTGCAGTTCTATACGCCGTTGCAGAACAGGAAGGAGCTTCGAAAGAAGACATT 821
Query 1042 GACCAACTTACTAAATTCAAATTCCGAAAGGTTGGTGATACTATGAAACACACTGTTGAT 1101
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 822 GACCAACTTACTAAATTCAAATTCCGAAAGGTTGGTGATTCTGTGAAACACACTGTTGAT 881
Query 1102 GAAGAACAAGGACAAGGAGATTCTGGAGGAGTGATGACTGAATGTGGTACAGATTCACCC 1161
|||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 882 GAAGAACAAGGA---G-A--TTCAGGAGGAGTGATGACTGAATGTGGTACAGATTCACCC 935
Query 1162 GTTGAACATGCTCTTCCTCATGAGGATGCAGAATGCTGCATTTGTCTTTCCGCTTATGAA 1221
|| |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 936 GTCGAACATACTCTTCCTCATGAGGATGCAGAATGCTGCATTTGTCTTTCGGCGTATGAA 995
Query 1222 GACGAGACAGAGCTAAGAGAACTTCCTTGTGGCCACCATTTCCATTGCGGTTGTGTGGAT 1281
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 996 GACGAGACAGAGCTTAGAGAACTTCCTTGTGGCCACCATTTCCATTGTGGTTGTGTGGAC 1055
Query 1282 AAATGGCTTTACATAAATGCTACTTGTCCCCTCTGCAAATACAACATCCTCAAGAGTAGC 1341
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AAATGGCTTTACATAAACGCTACTTGTCCCCTCTGCAAATACAACATCCTCAAGAGTAGC 1115
Query 1342 AACTACGAAGAAGGCGAGGAAGTCTAGAA 1370
|||||||||||||||||||||||||||||
Sbjct 1116 AACTACGAAGAAGGCGAGGAAGTCTAGAA 1144
> Ahg471429 jgi|Araly1|471429|fgenesh2_kg.1__1383__AT1G12760.2
Length=1691
Score = 758 bits (410), Expect = 0.0
Identities = 878/1098 (80%), Gaps = 56/1098 (5%)
Strand=Plus/Plus
Query 298 AGACAAGGGTTAAGAGAAGCGGCGAGGTTACTAAGACATGCAAGTAGCGGGAGAATGATG 357
||||||||||| |||||||| |||||||| ||||| | |||||||||| ||| || ||
Sbjct 315 AGACAAGGGTTGAGAGAAGCCGCGAGGTTTCTAAGTCGTGCAAGTAGC-GGA-CGTG-TG 371
Query 358 ATGAGAGAGCCATCGATGCTTGTTCGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAA 417
||| | ||||| || |||||||| | ||||| ||||| |||||||| || ||||| ||
Sbjct 372 ATGCGTGAGCCTTCTATGCTTGTGAGGGAAGCCGCGGCGGAGCAGCTGGAGGAGAGGCAG 431
Query 418 AGCGATTGGGCTTATTCGAAACCTGTAGTGGT-TTTGGAT-TTCGTTTGGAATCTTGCTT 475
|||||||||||||||||||| ||||| ||||| || ||| || || |||||||| ||||
Sbjct 432 AGCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTT-GATATT-GTGTGGAATCTGGCTT 489
Query 476 TTG--TCGTTGTTGCTACAGCTGTTTTGGT-ACTTAGCAGCG-ATGAGA-ATCCGAATAT 530
||| ||| |||||||| ||| ||||||| | | ||| | | |||| | |||||| |||
Sbjct 490 TTGTTTCG--GTTGCTACGGCTATTTTGGTGA-TGAGCCG-GAATGA-ACATCCGATTAT 544
Query 531 GCCTCTTAGGGTTTGGATTATT-GGGTATGGGTTGCAATGTATGATGCATATGGTTTGTG 589
||| ||||| |||||| || || ||||||| |||||||| || |||||||||||||||
Sbjct 545 GCCGCTTAGAGTTTGGCTT-TTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTG 603
Query 590 TTTGTGTTGAGTATCGTAGGAGGAATAGTAGAAGAA--GA-A-GA-GA-TTTGAGTCCAA 643
| |||||||||||||| ||||||||||| || |||| | | || || || ||||
Sbjct 604 TGTGTGTTGAGTATCGGAGGAGGAATAGGAGGAGAACCAATAGGACGACGACGACTCCAC 663
Query 644 GATCTA-GCtcttcttcttcttcttcttcttcttctATGGAT-GAAGAAGAAGGTTTGGG 701
| || | | ||||||||||| ||||| ||||||||| | | || ||||| | ||||||
Sbjct 664 GCTC-ACGTTCTTCTTCTTCCTCTTCATCTTCTTCT-TCCTTGGAGGAAGATGCTTTGGG 721
Query 702 TTTGAGTAGAAACTCAGATGAAC-GTTACTTGGAGCTAGGTCAATTAGAGAATGAAAACA 760
|| || || || |||| ||| | | ||||| || || || || || | |||| ||
Sbjct 722 TTCCAGGAGGAATTCAGGTGAGCAG-GACTTGTCCCTCGGCCACTTGGATACCGAAAGCA 780
Query 761 ATAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATCTCATTTATATGGTGGGTTA 820
||| |||| || ||||| |||||||| ||||| ||| | || |||||||||||| | |
Sbjct 781 GCAGTGTTGCAAAACATCTGGAATCTGCCAATACAATGTTTTCCTTTATATGGTGGATCA 840
Query 821 TTGGATTTTATTGGGTATCTTCTGGTGGTCAAGAGTTAGCACAAGGATCCCCACAGCTTT 880
||||||| || ||||||||| ||||||| |||||||| ||||||| |||||| | | |||
Sbjct 841 TTGGATTCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTT 900
Query 881 ATTGGTTGTGTATAGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTTTTCTGCGTTGCAT 940
| ||| ||| ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 901 ACTGGCTGTCTATTGTCTTTCTTGGTTTCGATGTGTTTTTTGTTGTCTTCTGTGTTGCGT 960
Query 941 TGGCTTGTGTTATCGGCATTGCTGTTTGCTGCTGCTTGCCTTGCATCATTGCAGTTCTAT 1000
|||| |||||||| || |||||||||||||| ||| |||| ||||||||||||||| | |
Sbjct 961 TGGCCTGTGTTATTGGAATTGCTGTTTGCTGTTGCCTGCCATGCATCATTGCAGTTTTGT 1020
Query 1001 ACGCCGTAGCAGAACAGGAAGGAGCTTCGAAAGAAGACATTGACCAACTTACTAAATTCA 1060
|||| || ||||| |||||||| ||||| |||||||||||||| || || || |||||||
Sbjct 1021 ACGCTGTTGCAGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCA 1080
Query 1061 AATTCCG-AAAGGTTGGTGATACTATGAAACACACTGTTGATGAAGAACAAGGACAAGGA 1119
| || || ||| || |||||| ||| | |||||||| |||||||| | ||||||
Sbjct 1081 AGTTTCGCAAA-GTAGGTGATGCTAACAGACACACTGGTGATGAAG--C----CCAAGGA 1133
Query 1120 GA-TTCTGGA-GGAGTGATGACTGAATGTGGTACAGATTCACCCGTTGAACATGCTCTTC 1177
| | | || ||| | |||||||| |||||||||||||||||| |||||||| ||| |
Sbjct 1134 -ACTAC-CGAGGGAATAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTC-TA 1190
Query 1178 CT-CATGAGGATGCAGAATGCTGCATTTGTCTTTCCGCTTATGAAGA-CGAGACAGAGCT 1235
| || |||||||||||||| ||||| ||||| || || |||||||| || ||||||||
Sbjct 1191 TTGCAAGAGGATGCAGAATGTTGCATCTGTCTCTCTGCATATGAAGATGGA-ACAGAGCT 1249
Query 1236 AAGAGAACTTCCTTGTGGCCACCATTTCCA-T-TGCGGTTGTGTGGATAAATGGCTTTAC 1293
||| ||||| |||||||| ||||||||||| | | | | || || || |||||||| |||
Sbjct 1250 AAGGGAACTACCTTGTGGACACCATTTCCACTGTTC-G-TGCGTAGACAAATGGCTATAC 1307
Query 1294 ATAAATGCTACTTGTCCC-CTCTGCAAATACAACATCCTCAAGAGTAGCAACTACGAAGA 1352
|| || || ||||| ||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1308 ATCAACGCGACTTG-CCCACTCTGCAAATACAACATCCTCAAGAGTAGCAACTT-G--GA 1363
Query 1353 AGGCGAGGAAGTCTAGAA 1370
| ||||||||||||||
Sbjct 1364 TCGAGAGGAAGTCTAGAA 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5