BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63180.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475030 jgi|Araly1|475030|fgenesh2_kg.2__160__AT1G63180.1 2329 0.0
Ahg471431 jgi|Araly1|471431|fgenesh2_kg.1__1385__AT1G12780.1 1206 0.0
Ahg920122 jgi|Araly1|920122|scaffold_101403.1 510 9e-144
> Ahg475030 jgi|Araly1|475030|fgenesh2_kg.2__160__AT1G63180.1
Length=1422
Score = 2329 bits (1261), Expect = 0.0
Identities = 1376/1430 (96%), Gaps = 14/1430 (1%)
Strand=Plus/Plus
Query 1 AAACCCTCACGAATTCAAGAAACCAATCAAAAG-CAAAAAAGCTTTCTCTTTCTCTACCT 59
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 1 AAACCCTCACGAATTCAAGAAACCAAACAAAAGAAAAAAAAGCTCTCTCTTTCTCTACCT 60
Query 60 TTTTCCTTAATTTCACTTTTGCGGCGTCGTTCTTATCTACTCACAAGAAAGCAACCGATC 119
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTTTCCTTAATTTTACTTTTGCGGCGTCGTTCTTATCTACTCACAAGAAGGCAACCGATC 120
Query 120 AAATAACTCCCAGAA-TAAAGAAAGACTCAAACTTTATTCTCTCTCTCTTTCTTAAATAG 178
||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 121 -AATAACTCCCA-AATTAAAGAAAGACTCAAAC-TT-TTCTCTCTCTCTTTCTTAAATAG 176
Query 179 TGAAGAAAGCTTCGATTTTGGGAAGTGGGTTTGTTCG-AAAAATGGGTTCTTCTGTGGAA 237
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 177 TGAAGAAAGCTTCGATTTTGGGAAGTGGGTTTG-T-GTAAAAATGGGTTCTTCTGTGGAA 234
Query 238 CAGAACATTTTGGTGACTGGTGGTGCTGGATTCATTGGAACACATACTGTTGTTCAGCTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGAACATTTTGGTGACTGGTGGTGCTGGATTCATTGGAACACATACTGTTGTTCAGCTT 294
Query 298 TTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTTGATAACTCTGTCGTTGAAGCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTTGATAACTCTGTCGTTGAAGCT 354
Query 358 GTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCTACCAAGCTTGAATTCAATCTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTCATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTCTACCAAGCTTGAATTCAATCTG 414
Query 418 GGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTTTCCAATCAGAGATTTGATGCT 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 GGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTTTTCTAATCAGAGATTTGATGCT 474
Query 478 GTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGTGTTGGAAACCCTCGTCGTTAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAGTGTTGGAAACCCTCGTCGTTAC 534
Query 538 TTTGATAATAACTTAGTTGGAACTATCAATCTATATGAGACCATGGCAAAATACAACTGC 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 535 TTTGATAATAACTTAGTTGGAACTATCAATCTATATGAAACCATGGCAAAATACAACTGC 594
Query 598 AAAATGATGGTGTTTTCGTCGTCTGCAACAGTTTATGGTCAACCTGAAATAGTCCCATGT 657
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 595 AAAATGATGGTGTTTTCGTCGTCTGCAACGGTTTATGGCCAACCTGAAATAGTCCCATGT 654
Query 658 GTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGGTCGTACTAAGCTGTTTCTTGAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATGGTCGTACTAAGCTGTTTCTTGAA 714
Query 718 GAGATAGCTAGAGACATTCACGCTGCGGAACCAGAATGGAAGATAATTCTTCTGAGGTAC 777
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 715 GAGATAGCTAGAGACATTCATGCTGCAGAACCAGAATGGAAGATAATTCTTCTGAGGTAC 774
Query 778 TTCAATCCGGTTGGAGCTCACGAGAGTGGAAGAATTGGAGAAGATCCAAAGGGCATACCG 837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTCAATCCGGTTGGAGCTCATGAGAGTGGAAGAATTGGAGAAGATCCAAAGGGCATACCG 834
Query 838 AATAATCTCATGCCTTATATCCAACAAGTGGCGGTTGGAAGATTACCTGAACTCAATGTA 897
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 835 AATAATCTCATGCCTTATATCCAACAAGTTGCGGTTGGACGATTACCTGAACTCAATGTA 894
Query 898 TTTGGACATGATTATCCTACCATGGATGGTAGCGCGGTTAGAGACTACATCCATGTAATG 957
| ||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 895 TATGGACATGACTATCCTACTATGGATGGCAGCGCGGTCAGAGACTACATCCATGTAATG 954
Query 958 GATTTAGCAGATGGCCATGTGGCTGCGTTAAACAAATTGTTTTCAGACTCAAAGATTGGC 1017
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 955 GATTTAGCAGATGGCCATGTGGCTGCATTAAACAAGTTGTTTTCAGACTCAAAGATTGGC 1014
Query 1018 TGTACTGCTTATAATCTTGGCACTGGTCAAGGAACTTCTGTCTTAGAAATGGTTTCTTCT 1077
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1015 TGTACTGCTTATAATCTTGGGACTGGTCAAGGAACTTCTGTCTTAGAAATGGTTTCTGCT 1074
Query 1078 TTTGAAAAAGCTTCTGGCAAGAAAATACCTATCAAGCTATGTCCAAGAAGAGCTGGAGAT 1137
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 TTTGAAAAAGCTTCTGGCAAGAAAATCCCTATCAAGCTATGTCCAAGAAGAGCTGGAGAT 1134
Query 1138 GCAACAGCTGTTTATGCTTCAACTCAGAAAGCTGAGAAGGAACTTGGCTGGAAGGCAAAA 1197
|||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||
Sbjct 1135 GCAACAGCTGTTTATGCTTCAACTGAGAAAGCTGAGAAAGAACTCGGATGGAAGGCAAAG 1194
Query 1198 TATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGGGCAAATAAGAATCCATGGGGT 1257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1195 TATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGGGCAGATAAGAATCCATGGGGT 1254
Query 1258 TTCCAGAAGAAGCCTTGAT-TGATTTTGTTTT-GTTTCACCACTCAA-TATAAAGaaaaa 1314
|||||||| ||||||||| || |||| |||| ||||||||| |||| ||||||||||||
Sbjct 1255 TTCCAGAAAAAGCCTTGAAATGTTTTTTTTTTTGTTTCACCATTCAAATATAAAGAAAAA 1314
Query 1315 aaaaGATATAGATGTCGTTTTATTTTCCTGCATCTATTTGATTTCTCTCTTCaaaaaaaG 1374
| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1315 TATA--TATAGATGTCGATTTATTTTCCTGCATCTATTTTATTTCTCTCTTCAAAAAAAG 1372
Query 1375 TTGTATTGAACTCGTCATCTTTCGGTTAATAAAGTATAAAGTTTATCTAC 1424
||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1373 TTGTATTGAACTCTTCATCTTTCGGTTAATAAAGTATAAAGTTTATCTAC 1422
> Ahg471431 jgi|Araly1|471431|fgenesh2_kg.1__1385__AT1G12780.1
Length=1435
Score = 1206 bits (653), Expect = 0.0
Identities = 930/1065 (87%), Gaps = 14/1065 (1%)
Strand=Plus/Plus
Query 218 AAATGGGTTCTTCTGTGGAACAGAACATT-TTGGTGACTGGTGGTGCTGGATTCATTGGA 276
||||||||||||||||||| ||||||||| || || ||||||||||||||||| || ||
Sbjct 197 AAATGGGTTCTTCTGTGGAGCAGAACATTCTT-GTTACTGGTGGTGCTGGATTTATCGGC 255
Query 277 ACACATACTGTTGTTCAGCTTTTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTT 336
|| |||||||||||||| ||| |||| | |||||||||||| ||||||| |||||||||
Sbjct 256 ACGCATACTGTTGTTCAACTTCTGAAAGATGGTTTTAAGGTTTCGATCATCGATAATCTT 315
Query 337 GATAACTCTGTCGTTGAAGCTGTTC-ATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTC 395
||||||||||| | ||||||| || |||| |||||||| ||||||||||||||||||||
Sbjct 316 GATAACTCTGTTATCGAAGCTG-TCGATAGAGTTAGGGAGCTTGTTGGTCCTGATCTCTC 374
Query 396 TACCAAGCTTGAATTCAATCTGGGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTT 455
| ||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 375 CAAGAAGCTCGACTTCAATCTGGGTGATCTAAGAAACAAAGGGGACATTGAGAAACTCTT 434
Query 456 TTCCAATCAGAGATTTGATGCTGTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAG 515
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 435 CTCCAAGCAGAGATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAG 494
Query 516 TGTTGGAAACCCTCGTCGTTACTTTGATAATAACTTAGTTGGAACTATCAATCTATATGA 575
||||||||||||||| || |||||||| |||||||| |||||||| |||||||| |||||
Sbjct 495 TGTTGGAAACCCTCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTGTATGA 554
Query 576 GACCATGGCAAAATACAACTGCAAAATGATGGTGTTTTCGTCGTCTGCAACAGTTTATGG 635
|||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||||
Sbjct 555 GACCATGGCAAAGTACAACTGCAAAAGGATGGTGTTTTCATCATCTGCAACTGTTTATGG 614
Query 636 TCAACCTGAAATAG-TCCCATGTGTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATG 694
|||||||||| | | ||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 615 ACAACCTGAAA-CGATTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATG 673
Query 695 GTCGTACTAAGCTGTTTCTTGAAGAGATAGCTAGAGACATTCAC-GCTGCGGAACCAGAA 753
||||||||||||| ||||||||||| ||||||||||| ||||| | || ||||| |||
Sbjct 674 GTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAGAGATATTCAAAGG-GCAGAACCGGAA 732
Query 754 TGGAAGA-TAATTCTTCTGAGGTACTTCAATCCGGTTGGAGCTCACGAGAGTGGAAGAAT 812
|||| || | |||| ||||||||||||||||| || ||||| || |||||||| || ||
Sbjct 733 TGGA-GAATTGTTCTGCTGAGGTACTTCAATCCTGTAGGAGCACATGAGAGTGGCAGTAT 791
Query 813 TGGAGAAGATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTGGCGGT 872
||| || |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 792 TGGTGAGGATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGT 851
Query 873 TGGAAGATTACCTGAACTCAATGTATTTGGACATGATTATCCTACCATGGATGGTAGCGC 932
|||| | ||||| ||||||||||| | ||||||||| ||||| |||| ||||||||| ||
Sbjct 852 TGGACGTTTACCAGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGC 911
Query 933 GGTTAGAGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCGTTAAACAA 992
||| ||||||||||||||||| ||||||||||| ||||||||| | |||||| | | ||
Sbjct 912 GGTAAGAGACTACATCCATGTGATGGATTTAGCGGATGGCCATATCGCTGCGCTCAGGAA 971
Query 993 ATTGTTTTCAGACTC-AAAGATTGGCTGTACTGCTTATAATCTTGGCACTGGTCAAGGAA 1051
| ||| | || || ||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 972 GCTATTTGCTGA-TCCAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAA 1030
Query 1052 CTTCTGTCTTAGAAATGGTTTCTTCTTTTGAAAAAGCTTCTGGCAAGAAAATACCTATCA 1111
| ||||| |||||||||||| | |||||||||||||||| ||||||||||| || ||||
Sbjct 1031 CGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATCA 1090
Query 1112 AGCTATGTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTCAGAAAGCT 1170
|||| ||||| ||||| | | |||||||||||||| |||||||||||||| |||| |||
Sbjct 1091 AGCTCTGTCCGAGAAG-GTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCT 1149
Query 1171 GAGAAGGAACTTGGCTGGAAGGCAAAATATGGAGTTGATGAGATGTGCAGAGATCAATGG 1230
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1150 GAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGG 1209
Query 1231 AACTGGGCAAATAAGAATCCATGGGGTTTCCAGAAGAAGCCTTGA 1275
|| |||||||| || ||||||||||||| ||||||||||| ||||
Sbjct 1210 AATTGGGCAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGA 1254
> Ahg920122 jgi|Araly1|920122|scaffold_101403.1
Length=841
Score = 510 bits (276), Expect = 9e-144
Identities = 399/459 (87%), Gaps = 6/459 (1%)
Strand=Plus/Plus
Query 820 GATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTGGCGGTTGGAAGA 879
|||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||| |
Sbjct 366 GATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGTTGGACGT 425
Query 880 TTACCT-GAACTCAATGTATTTGGACATGATTATCCTACCATGGATGGTAGCGCGGTTAG 938
||| || ||||||||||| | ||||||||| ||||| |||| ||||||||| ||||| ||
Sbjct 426 TTA-CTGGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGCGGTAAG 484
Query 939 AGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCGTTAAACAAATTGTT 998
||||||||||||||| ||||||||||||||||||||| | |||||| | | || | ||
Sbjct 485 AGACTACATCCATGTGATGGATTTAGCAGATGGCCATATCGCTGCGCTCAGGAAGCTATT 544
Query 999 TTCAGACT-CAAAGATTGGCTGTACTGCTTATAATCTTGGCACTGGTCAAGGAACTTCTG 1057
| | || | |||||||||| ||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 545 TGCTGA-TCCAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAACGTCTG 603
Query 1058 TCTTAGAAATGGTTTCTTCTTTTGAAAAAGCTTCTGGCAAGAAAATACCTATCAAGCTAT 1117
| |||||||||||| | |||||||||||||||| ||||| ||||| || |||||||| |
Sbjct 604 TGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAAAAAATCCCGATCAAGCTTT 663
Query 1118 GTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTCAGAAAGCTGAGAAG 1176
|||| ||||| | | ||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 664 GTCCGAGAAG-GTCAGGAGATGCAACAGGAGTTTATGCTTCAACAGAGAAGGCTGAGAAA 722
Query 1177 GAACTTGGCTGGAAGGCAAAATATGGAGTTGATGAGATGTGCAGAGATCAATGGAACTGG 1236
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 723 GAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGGAATTGG 782
Query 1237 GCAAATAAGAATCCATGGGGTTTCCAGAAGAAGCCTTGA 1275
||||| || ||||||||||||| ||||||||||| ||||
Sbjct 783 GCAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5