BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63200.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338056 jgi|Araly1|338056|fgenesh1_pg.C_scaffold_2000155 754 0.0
> Ahg338056 jgi|Araly1|338056|fgenesh1_pg.C_scaffold_2000155
Length=522
Score = 754 bits (408), Expect = 0.0
Identities = 485/522 (93%), Gaps = 5/522 (1%)
Strand=Plus/Plus
Query 94 ATGACTAGGACGGAGGAAGATAAGCCTGAGCTCACACCAGAGGAAGAACTTGCCCTTATG 153
||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 1 ATGACTAAGACGGAGAAAGATAAGCCTGAGCTGACACCAGAGCAAGAACTTGCCCTAATG 60
Query 154 ACCAAACAAGTCAATGCTAGCGATGGGTTTGATATAGATTTCAGTTCCTTCCTCTGTGTA 213
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 61 ACCAAAGAAGTCAATGCTAGCGATGGGTTTGATATAGATTTCAGCTCCTTCCGCTGTGTT 120
Query 214 TTCAACTACCATCCTGCTATTCTCCATTCTGATCAATTCGCTGACGATGAGTTTGATACT 273
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 121 TTCAACTACCATCCTGCTGTTCTCCATTCTGATCAATTCGCTGACGATGACTTTGAAACT 180
Query 274 ACTGAGGATTTACTCAAGA-GCCTTGCTCAGGAAGCTCTTGATGACCACAATGGCAGACA 332
||||||||||| ||||||| | |||||||||||||| ||||||| ||||||||||| |||
Sbjct 181 ACTGAGGATTTCCTCAAGATG-CTTGCTCAGGAAGCCCTTGATGTCCACAATGGCAAACA 239
Query 333 TGGCACAGAGTATGAGTTTGTTAAAGTTGTTAAAGCCAATTTTCACTTTGCTTGTGCGAT 392
|| |||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TGTCACAGAATATGAGTTGGTCAAAGTTGTTAAAGCCAATTATCACTTTGCTTGTGCGAT 299
Query 393 GATGTTTCTCATAACATTTCAAGTCAAGGATCCTTATGATGACATGGTTAAGCTCTTCCA 452
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 300 TATGTTTCTCATAACATTTCAAGTCAAGGATCCTTATGATGACAAGATTAAGCTCTTCCA 359
Query 453 AACAAGGGTACGCCACGGTAAACATATCACTACTAACTATGTCTTCTGCAGACCTAAACC 512
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 360 AACAAGGGTACGCCAGGGTAAACATATCACTACTAACTATGTCTTCTGCAGGCCCAAACC 419
Query 513 CAATCAAGGAGTGAAATACTTTGGAATCAAGAAAGTTGTCAAGAGAGATATTGAGCAAGT 572
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 CAATCAAGGAGTGGAATACTTTGGGTTCAAGAAAGTTGTCAAGAGAGATATTGAGCAAGT 479
Query 573 TGTCAAGAGCCATGTTCCCAAAGATGTCGTCAAGAAACAAAA 614
|||||||||||||||||| ||||||||| || ||||||||
Sbjct 480 TGTCAAGAGCCATGTTCCGAAAGATGTC---AATAAACAAAA 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5