BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63205.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907103 jgi|Araly1|907103|Al_scaffold_0002_184 861 0.0
Ahg907104 jgi|Araly1|907104|Al_scaffold_0002_185 612 1e-174
> Ahg907103 jgi|Araly1|907103|Al_scaffold_0002_184
Length=567
Score = 861 bits (466), Expect = 0.0
Identities = 538/572 (94%), Gaps = 7/572 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGAATCATTCGAAGGCTGGAATGCGTGGCTCGAAGATGCATATTTGCTATGTACA 60
|||| |||||||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 1 ATGGTTGAATCATTCGAAGGCTGGACTTCATGGGTCGAAGATGCATATTTGCTATGTACA 60
Query 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTGAAGACCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
Query 121 CAGTACACAGTAGATGAAGAAATTGCTATGATGAACGAACAAATCACGAAGAGCGAGGGG 180
|| ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 121 CAATACACTGTAGATGAAGAAATTTCCATGATGAACGAACAAATCACAAAGAGCGAGGGG 180
Query 181 TTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCAAT 240
Query 241 GATTTCGATTTCCTTGATGATGAATCAGA-AGAAACCAACGGGGATTTCATGAAGAGGTT 299
|||| |||||||||||| |||||| || | |||||||||||||||||||||||||||| |
Sbjct 241 GATTACGATTTCCTTGAAGATGAAACA-ACAGAAACCAACGGGGATTTCATGAAGAGGCT 299
Query 300 TTCTCAAGAATCTCTTAAGCGTTACAATGACGAATGTGGTACGAACAAATATGAATTTCA 359
||||||||||| |||||||| |||||||||||||||||||| | |||| ||||||||
Sbjct 300 CTCTCAAGAATCCCTTAAGCGCTACAATGACGAATGTGGTAC--A-AAATTTGAATTTCT 356
Query 360 CGAGGTTGTCAAAGCCAATTTTCACGGATCTTG-TGGATATATGTTTCTCATCACGTTTC 418
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 357 CGAGGTTGTCAAAGCCAATTTTCACGGATC-TGTTGGATATATGTTTCTCATCACGTTTC 415
Query 419 AAGTGTTTGATCCATCTGATGACCAGGAAAAAACCTTCCAAGCTAGGATCCGTTACACTA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGTGTTTGATCCATCTGATGACCAGGAAAAAACCTTCCAAGCTAGGATCCGTTACACTA 475
Query 479 CACATTACCCCACTGAATTCGTCTTTTGTAGGCCGAAACCGAATCCAGAAGTTGACTCTC 538
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 CACATTACCCGACTGAATTCGTCTTTTGTAGGCCGAAACCCAATCCAGAAGTTGACTCTG 535
Query 539 ATGAAACTGCCGAGGAAGATGTCAAAGGTTGA 570
||||||| || ||||||||||||||||||||
Sbjct 536 GTGAAACTTCCAAGGAAGATGTCAAAGGTTGA 567
> Ahg907104 jgi|Araly1|907104|Al_scaffold_0002_185
Length=564
Score = 612 bits (331), Expect = 1e-174
Identities = 496/573 (87%), Gaps = 21/573 (4%)
Strand=Plus/Plus
Query 1 ATGGGTGAATCATTCGAAGGCTGGAATGCGTGGCTCGAAGATGCATATTTGCTATGTACA 60
||||||||| ||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGTGAAACATTCGAAGGCTGGACTTCTTGGGTCGAAGATGCATATTTGCTATGTACA 60
Query 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACCGAGAAAGACGAGCCT 120
Query 121 CAGTACACAGTAGATGAAGAAATTGCTATGATGAACGAACAAATC-ACGAAGAGCGAGGG 179
|| ||||| ||||| |||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 121 CAATACACTGTAGAAGAAGAAATTGCTATGATGAACGAACAAATCGA-GAAAAGCGAGGG 179
Query 180 GTTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGA 239
Query 240 TGATTTCGATTTCCTTGATGATGAATCAGAAGAAACCAACGGGGATTTCATGAAGAGGTT 299
|||| ||||||| |||| || | ||||| | |||| |||||||| ||||||||| |
Sbjct 240 TGATACCGATTTCGTTGAGGA-GC--CAGAA-A--CCAATGGGGATTTAATGAAGAGGCT 293
Query 300 TTCTCAAGAATCTCTTAAGCGT-TACAATGACGAATGTGGT-ACGAACAAATATGAATTT 357
|||||||||||| ||||| ||| | ||| | || | || ||| | | | ||||||
Sbjct 294 TTCTCAAGAATCCCTTAA-CGTCTTTAATAAGGAG-GAGGGCACGGA-AT-TC-GAATTT 348
Query 358 CACGAGGTTGTCAAAGCCAATTTTCACGGATCTTG-TGGATATATGTTTCTCATCACGTT 416
| | ||||||||||||||||| ||| || || ||| | |||||||||||| || ||
Sbjct 349 GTCAAAGTTGTCAAAGCCAATTTCCACT-ATAGTGCTGGGTTTATGTTTCTCATAACATT 407
Query 417 TCAAGTGTTTGATCCATCTGATGACCAGGAAAAAAC-CTTCCAAGCTAGGATCCGTTACA 475
| ||||||| |||||||||||| ||||||||||| | ||||||||||||| | ||||||
Sbjct 408 TGAAGTGTTGGATCCATCTGATAACCAGGAAAAA-CTCTTCCAAGCTAGGGTTCGTTACT 466
Query 476 CTACACATTACCCCACTGAATTCGTCTTTTGTAGGCCGAAACC-GAATCCAGAAGTTGAC 534
|||||| || ||| |||||| ||||||||||||||| ||||| || |||||||||||||
Sbjct 467 CTACACGTTTCCCGGCTGAATACGTCTTTTGTAGGCCAAAACCCGA-TCCAGAAGTTGAC 525
Query 535 TCTCATGAAACTGCCGAGGAAGATGTCAAAGGT 567
||| |||||||| |||||||||||||||| |||
Sbjct 526 TCTGATGAAACTTCCGAGGAAGATGTCAATGGT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5