BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63206.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315087 jgi|Araly1|315087|fgenesh1_pm.C_scaffold_2000120 649 0.0
Ahg907102 jgi|Araly1|907102|Al_scaffold_0002_183 610 5e-174
> Ahg315087 jgi|Araly1|315087|fgenesh1_pm.C_scaffold_2000120
Length=531
Score = 649 bits (351), Expect = 0.0
Identities = 482/543 (89%), Gaps = 17/543 (3%)
Strand=Plus/Plus
Query 1 ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT 60
|||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 1 ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT 60
Query 61 CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT 119
|||||||| ||| |||||||||| |||||||||| |||||||| ||| | ||||||||||
Sbjct 61 CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT 119
Query 120 TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG 179
|||||||||||||||||| | |||||||||||| || |||||||||||||||||||| ||
Sbjct 120 TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG 179
Query 180 CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT 239
|||||| |||||||||||||||||| |||| ||| | | || || |||||||||||
Sbjct 180 CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT 230
Query 240 GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA 299
|||| |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||
Sbjct 231 GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA 290
Query 300 CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT 359
||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 291 CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT 350
Query 360 GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA 419
|||| ||||| ||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 351 GTGTTCTGGG------AGAATGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA 404
Query 420 CCTGCTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACAT 479
||||| ||||||||| ||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 405 CCTGCCAAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACGGATGACTACAT 464
Query 480 ATTATGCAGACCAAAGCCCTATCAGAAAGTCAAATGCGTTGGATCTTCCAAGACACATAA 539
||||||||||||||| ||| ||||||||||||||||||||||| |||||| || ||||||
Sbjct 465 ATTATGCAGACCAAAACCCAATCAGAAAGTCAAATGCGTTGGAACTTCCAGGAAACATAA 524
Query 540 AAG 542
|||
Sbjct 525 AAG 527
> Ahg907102 jgi|Araly1|907102|Al_scaffold_0002_183
Length=981
Score = 610 bits (330), Expect = 5e-174
Identities = 520/608 (86%), Gaps = 28/608 (5%)
Strand=Plus/Plus
Query 1 ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT 60
|||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 34 ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT 93
Query 61 CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT 119
|||||||| ||| |||||||||| |||||||||| |||||||| ||| | ||||||||||
Sbjct 94 CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT 152
Query 120 TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG 179
|||||||||||||||||| | |||||||||||| || |||||||||||||||||||| ||
Sbjct 153 TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG 212
Query 180 CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT 239
|||||| |||||||||||||||||| |||| ||| | | || || |||||||||||
Sbjct 213 CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT 263
Query 240 GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA 299
|||| |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||
Sbjct 264 GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA 323
Query 300 CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT 359
||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 324 CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT 383
Query 360 GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA 419
|||| ||||| | | | ||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 384 GTGTTCTGGGA-T---A-A-TGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA 437
Query 420 CCTG-CTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACA 478
|||| | ||||||||| ||| ||||||||||| || ||||||||||||| ||||||||||
Sbjct 438 CCTGGC-AAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACAGATGACTACA 496
Query 479 TATTATGCAGACCAAAGCCCTATCAGAAAGT-CAAATGCGTTGGATCTTCCAAGA-CACA 536
|||||||||||||||| ||| ||||||||| || || || || || | ||
Sbjct 497 TATTATGCAGACCAAAACCCAATCAGAAAGGGCAGATTTTTT--ATG----AATATCATG 550
Query 537 TAAAAGCTTGGCATAGGACCTTATGCGATATCCAATGTGGTTTTCTTGGTGAGCAGTGAG 596
| ||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||
Sbjct 551 TTGT-GCTTGGCATAGGAGCTTATGCGATATCTAATGCGGTTTGGGTGGTGAGCAGTGAG 609
Query 597 CTAAATTA 604
||||||||
Sbjct 610 CTAAATTA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5