BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63210.1
Length=3594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907098 jgi|Araly1|907098|Al_scaffold_0002_179 5415 0.0
Ahg925610 jgi|Araly1|925610|scaffold_201171.1 2575 0.0
> Ahg907098 jgi|Araly1|907098|Al_scaffold_0002_179
Length=3720
Score = 5415 bits (2932), Expect = 0.0
Identities = 3391/3610 (94%), Gaps = 41/3610 (1%)
Strand=Plus/Plus
Query 2 TGAGGAGGAAGA-AAATGAAATAT-AAGCAAGGAACTGATTCGAACGCTTTACG--A--- 54
||| |||||||| |||| |||| | ||||||||||||||||| ||||||||||| |
Sbjct 120 TGA-GAGGAAGATAAAT-AAAT-TCAAGCAAGGAACTGATTCCAACGCTTTACGATACGC 176
Query 55 T-ACGCTAATGATGTATTTGGTGATCCTGAAGAATTGTTGAAACTTCGGAAAAAGGATTT 113
| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 177 TAACGCTAATGATATATTTGGTGATCCTGAAGAATTGTTGAAACTTCGGAGAAAGGATTT 236
Query 114 GA-AGTATAACGAAAAGATCGAAAGAAAGTTAGAAGATGAGTTTGAACCAATGGTTCTCT 172
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 237 -AGCGTATAACGAAAAGATCGAAAGAAAGTTAGAAGATGAGTTTGAACCAATTGTTCTCT 295
Query 173 CTGAGAAGTATATGACGGAGAAAGATGATGAAATTAGGAAGCTTGATGTTCCTGAGAGAA 232
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGAGAAGTATATGACACAGAAAGATGATGAAATTAGGAAGCTTGATGTTCCTGAGAGAA 355
Query 233 TGCAGATATTTGAAGAAGCCATTGGAATTGTTTCCC-TAGATGACATGAGCATTCAAGAA 291
|||||||||| ||||||| || ||||| | |||| | ||||| || |||||| |||||
Sbjct 356 TGCAGATATTCGAAGAAGTCACTGGAAACG-CTCCCGTCGATGATATTAGCATTGAAGAA 414
Query 292 GAGAGCAACTGGATTTATGCTCGATTGCTTCAAGAACAAGG-GCAGGGTTGTTTGATTAA 350
||||||||||||||||||||||||||| |||||||||| || || ||| |||| ||||
Sbjct 415 GAGAGCAACTGGATTTATGCTCGATTGGTTCAAGAACATGGTCCA-AGTTTTTTGGTTAA 473
Query 351 TAAGGATGACATTGTGAAG-TTTTTAGAGATGTTTCATGTGCAGAAGTTAGAGATACCGT 409
|| |||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 474 CAAAGATGACATTGTG-AGATTTTTGGAGATGTCTCATGTGCAGAAGTTAGAGATACCGT 532
Query 410 TTATAGCTATGTATCGGAAGGAGCAGTGTCGGAGTTTATTGGACAGTTCTGATGATGATC 469
||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 533 TTATAGCTATGTACCGGAAGGAGCAGTGTCGGAGTTTGTTGGACAGTTC---TGATG--- 586
Query 470 ATGATGGTAGTGATTTCAATCTTGACAAGAAGCTTGAGACCAAGTGGCATAAAGTCTTGT 529
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
Sbjct 587 ATGATGGTAGTGATTTCAATCTTCTCAAGAAGCTTGAGACCAAGTGGAATAAAGTCTTCT 646
Query 530 GGATGATTCAAGATTTGGATAGAAAGTGGGTTCTTCTGCGGAAAAGGAAAACCGCGTTGT 589
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 647 GGATGATTCAAGATTTGGATAGAAAGTGGCTTCTTCTTCGGAAAAGGAAAACCGCGTTGT 706
Query 590 TTGGTTACTATACCAAACGTTTTGAAGAAGAAACCTGCATGTCTGATCTGAATAAGAGTC 649
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 707 TTGGTTACTTTACCAAACGTTTTGAAGAAGAAACCTGCAGGTCTGATCTGAATAAGAGTC 766
Query 650 TTTTTGAATCTGTTATTAAGTCTCTTCAAGCGGCGGAGACAGAGAGAGAAGTTGATGATG 709
|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 767 TTTTTGAATCGGTTATGAAGTCTCTTAAAGCGGCGGAGACAGAGAGAGAAGTTGATGATG 826
Query 710 TAGACTCAAAGTTCAACTTGCATTTTCCTCATTGTGAGATCGATGAAGGACAGTACAAGA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 827 TAGACTCAAAGTTCAACTTGCATTTTCCTCATTGTGAGATCGATGAAGGACAGTATAAGA 886
Query 770 GGCCGAATAGGAAATCGCAATATAGCATCTGCAGCAAATTTGGGATTAAGGAATTTGCAA 829
||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 887 GGCCGAATAGGAAATCGCATTATAGCATCTGTAGCAAATTTGGAATCCGGGAATTTGCAA 946
Query 830 ACAAGTTTGGTTATAGCGCTGAGCAATTGGGACTAGCGTTGTCTCTTGAGAAAGTTTTTG 889
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 947 ACAAGTTTGGTTATAGCGCTGAGCAATTGGGATTTGCGTTGTCTCTTGAGAAAGTTTTTG 1006
Query 890 TTGATGAGCTTGAAGATGCAAAGAAAACACCAGAGGAGATGGCATTGAACTATGAGTGTG 949
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 1007 TTGATGAGCTTGAAGATGCAAAGAAAACACCAGAGGAGATGGCATTGTACTATAAATGTG 1066
Query 950 CAATGTTTGGAGATTCTCAAGCTGTTCTTAAAGGTGCAAGGCATATGGCTGCGGTTGAGA 1009
||||||||| |||| |||||| |||||||||||| ||| ||||| |||||||||||||||
Sbjct 1067 CAATGTTTGAAGATCCTCAAGTTGTTCTTAAAGGCGCACGGCATGTGGCTGCGGTTGAGA 1126
Query 1010 TAAGCTGCGAGCCATCGATTAGAAAGTATGTTCGTGGAATTTTTATGGAGAATGCAGTAG 1069
||||||||||||||| ||||| |||||||||||| || |||| |||||||||||||||||
Sbjct 1127 TAAGCTGCGAGCCATTGATTAAAAAGTATGTTCGCGGGATTTATATGGAGAATGCAGTAG 1186
Query 1070 TCTCAACGAGTCCAACACCAGATGGGAATGTGGTTATAGATTCCTTCCATCGGTTTTCTG 1129
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1187 TCTCAACGAGTCCAACACCAGATGGGGATGTGGTTATAGATTCTTTCCATCGGTTTTCTG 1246
Query 1130 CGGTTAAGTGGTTAAGCGAGAAGCCATTGAGAAAGTTTGATGGTGTACAATGGCTTCTCA 1189
|||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||| |
Sbjct 1247 CGGTTAAGTGGTTACGCGAAAAGCCATTGAGAAAGTTTGAAGGTACACAATGGCTTCTTA 1306
Query 1190 TTCAGAAAGCAGAAGAGGAGAAGCTTCTTCAAGTAACTTTCAAGCTGCCTGAGAATCAGA 1249
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TTCAGAAAGCAGAAGAAGAGAAGCTTCTTCAAGTAACTTTCAAGCTGCCTGAGAATCAGA 1366
Query 1250 TGAATAGGATAATTAGTGAATGCAGTGAACACTATCTAAGTGTTGGTGTTAGTAAGTATG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TGAATAGGATAATTAGTGAATGCAGTGAACACTATCTAAGTGTTGGTGTTAGTAAGTATG 1426
Query 1310 CTCAACTCTGGAACGAGCAGAGGAAATTGATACTGGAGGATGCGGTTCATGGTTTTGTTT 1369
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 1427 CTCAACTCTGGAATGAGCAGAGGAAATTGATACTGGAGGACGCGGTTCACGGTTTTCTTT 1486
Query 1370 TGCCGTCAATGGAGAAAGAAGCAAGATCCTTGCTAACTAGCAGAGCGAAGACTCAGTTGC 1429
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1487 TGCCGTCAATGGAGAAAGAAGCAAGATCCTTGCTAACTAGCAGAGCGAAGACTCGGTTGC 1546
Query 1430 TTTCAGAGTATGGACAGGTTTTATGGAACAAAGTGTCTTCAGGGCCATATCGAAGGAATA 1489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1547 TTTCAGAGTATGGACAGGTTTTATGGAAAAAAGTGTCTTCAGGGCCATATCGAAGGAATA 1606
Query 1490 ATAATA---CCTCGGAGGAGGAAGCTGCACCGAGGGTCCTAGCTTGTTGTTGGGGACCTG 1546
|||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1607 ATAATAATACCTCGGATGAGGAAGCTGCGCCGAGGGTCCTAGCTTGTTGTTGGGGACCTG 1666
Query 1547 GAAATCCAGAAACTACATTTGTGATGCTTGATTCATCAGGAGAGCTGGTTGATGTGCTTT 1606
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1667 GAAATCCAGAAACTACATTTGTGATGCTTGATTCATCGGGAGAGTTGGTTGATGTGCTTT 1726
Query 1607 ACTCAGGTTCCATTGGATTGCGGTCTCGGGATGTAAATGACCAGAAACGTaaaaa-aaTG 1665
|| |||| ||||||| || |||||||||||||||||||||||||||||||||||| || |
Sbjct 1727 ACGCAGGATCCATTGCATCGCGGTCTCGGGATGTAAATGACCAGAAACGTAAAAAGAA-G 1785
Query 1666 GATCAAGATCGTTTTCTAAAGTTTATAAGAGACCATCAACCAGATGTTTTGGCTTTAGCA 1725
|||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1786 GATCAAGATCGTCTTCGAAAGTTTATAAGAGACCATCAACCAAATGTTGTGGCTTTAGCA 1845
Query 1726 GCTGTTAATTTGAGTTGTGTACGCCTGAAGGATGAGATTTATGAGGCTATATTCCAAATG 1785
|||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1846 GCTGCAAATTTGAGTTGTGTACGTCTGAAGGATGAGATTTATGAGGTTATATTCCAAATG 1905
Query 1786 GTGGAAGAGCTGCCGT-TGAATTATGTAGATGATAGGATTTATGATTTTCCATTGGTTTA 1844
|||||||| ||||||| || || ||||| | | |||||||||| || ||| |||||||
Sbjct 1906 GTGGAAGAACTGCCGTCTG--TT--GTAGAAGCTGGGATTTATGACTTACCAGTGGTTTA 1961
Query 1845 TGCGGATGAATCTCTTCCTAGGCTATACGAAAATTCTAGAATCTCAAGTGAACAACTACC 1904
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1962 TGCGGATGAATCTCTTCCTAGGCTATACGAAAATTCTAGAATCTCAAGAGAACAACTACC 2021
Query 1905 TCAACAAGCAGGAATTGTGAAACGCGCAGTTTCTCTTGGACGTTATCTCCAGAATCCATT 1964
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2022 TCAACAGGCAGGGATTGTGAAACGCGCAGTTGCTCTTGGACGTTATCTCCAGAATCCATT 2081
Query 1965 AGCAATGATCTCAACTTTATGCGGTCCAGGTAGAGATATTCTGTCTTGGAAGCTTCATTC 2024
||||||||||||||| |||||||||||||||| ||||||| |||| |||||||| |||||
Sbjct 2082 AGCAATGATCTCAACCTTATGCGGTCCAGGTAAAGATATTTTGTCATGGAAGCTACATTC 2141
Query 2025 TTTTCAAGATTTTCTTGATCCAGATGAGAAGTATGAGATGGTTGAACAAGTTATGGTTGA 2084
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2142 TTTGCAAGATTTTCTTGATCCAGATGAGAAGTATGAGATGGTTGAGCAAGTTATGGTTGA 2201
Query 2085 CATAACGAATCAAGTTGGAATCGACATTAATCTGGCTGCGAGCCATGAATGGCTTTTTTC 2144
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2202 CTTAACAAATCAAGTTGGAATCGACATTAATCTGGCTGCGAGCCATGAATGGCTTTTTGC 2261
Query 2145 TCCTTTACAGTTTGTTTCAGGTCTTGGTCCTAGGAAAGCTGCATCTTTGCAGAAGTCTCT 2204
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 2262 TCCTTTACAGTTTGTTTCAGGGCTTGGCCCTAGGAAAGCTGCATCTTTGCAGAGGTCTCT 2321
Query 2205 TGTTAGAGCTGGTTCGATATTTGTCCGCAAGGAACTGATAAATCATGGGATTGGTAAAAA 2264
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2322 TGTTAGATCTGGTTCGATATTTGTCCGCAAGGAACTGATAAATCATGGGCTTGGTAAAAA 2381
Query 2265 GGTATTCGTAAATGCAGCTGGTTTCTTACGGATTCGTAGGAGCGGGTTGGCTTGTAGTAG 2324
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2382 ACTTTTCGTAAATGCAGCTGGTTTCTTACGGATTCGTAGGAGTGGGTTGGCTTGTAGTAG 2441
Query 2325 CAGCCAATTTATTGATCT-GTTGGATGACACTAGAATACATCCCGAATCATACGGTCTTG 2383
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 2442 CAGCCAATTTATTGA-CTTGTTGGATGACACTAGAATACATCCGGAATCATACGGTCTTG 2500
Query 2384 CGCAAGAATTGGCGAAAGATGTTTATGCTCATGATACTGTAAGAGGTGATGAGGATGATG 2443
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2501 CGCAAGAATTGGCGAAAGATGTTTATACTCATGATACTGTAAGAGATGATGAGGATGATG 2560
Query 2444 CAATAGAGATGGCGATAGAGCATGTGAGAGATGAGCCAGCTTCTTTGAGGAAAATCGTTC 2503
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 2561 CAATAGAGATGGCGATAGAGTATGTAAGAGATGAGCCAGCTTCTTTGAGGAAAATCGTTC 2620
Query 2504 TTGATGAGTACTTGAGAAGCAAGAACCAAGAGAATAAGAAGGAAACTTATAGTCTGATCA 2563
|||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2621 TTGATGAGTATTTGAGAAGCAAGAACCAAGAGAATAAGAAGGAAACTTATAGTTTTATCA 2680
Query 2564 TGAGAGAATTAAGCTGTGGATTTCAGGATTGGCGGAGTCTGTTTAAAGAGGTTGATTCAG 2623
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 2681 TGAGAGAATTAAGCTGTGGTTTTCAGGATTGGCGAAGTCTGTTTAAAGAGGTTGATCCAG 2740
Query 2624 ATGAGGAGTTTTATATGATTTCAGGTGAAACCAAAGAAACTATTGGTGAAGGGAGGATTG 2683
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2741 ATGAAGAGTTTTATATGATTTCTGGTGAAACCAAAGAAACTATTGGTGAAGGGAGAATTG 2800
Query 2684 TGCAGGCCACTGTTAAGAAAGTGA-CAAGTGGTAAAGCCAAATGTGTATTAGATTGTGGA 2742
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2801 TGCAGGCCACTGTTAAGAAAGT-ATCAAGTGGTAAAGCCAAATGTGTATTAGATTGTGGA 2859
Query 2743 TTACCTGGGATTCTCTTGAAGGAAGATTACTCAGATGATGGTAGAGATATCGTTGATTTG 2802
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2860 TTACCTGGGATTCTCTTAAAGGAAGATTACTCGGATGATGGTAGAGATATCGTTGATTTA 2919
Query 2803 TCTAACAAACTGTGTGAAGGCGATATCGTTACTTGCAAGGTCAAATCGATTCTAAAGCAA 2862
|| |||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||
Sbjct 2920 TCAAACAAACTGTGTGAAGGCTATATCGTCACTTGCAAGATCAAATCAATTCTAAAGCAA 2979
Query 2863 AGGTATCATGTGTTACTTGTCTGCAAAGAAAGCGAAATGAGAAAGCACAGGAATCTCGGG 2922
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2980 AGGTATCATGTGTTACTTGTCTGCAAAGAAAGCGAAATGAGAAAGAACAGGAATCTCCGG 3039
Query 2923 GATGTCGATGATTATTACCACGAGGAGAAACGAAATAGTGTCCTGATAGAGAAAGAGAAA 2982
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 3040 GATGTCGATGATTATTACCACGAGGAGGAACGAAAAAATGTCCTGATAGAGAAAGAGAAA 3099
Query 2983 GTTCCTAAAGAAAAGAAGCAGTTTAAGTCTCGGATGATTGTTCATCCTCGGTTTCAGAAC 3042
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3100 GCCCCTAAAGAGAAGAAGCAGTTTAAGTCTCGGATGATTGTTCATCCTCGGTTTCAGAAC 3159
Query 3043 ATCACTGCCGAGCAAGCAACAGTGTATTTGTCTGATAAGAATATTGGAGAAAGCATTGTT 3102
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 3160 ATCACTGCTGAGCAAGCAACAGGGTATTTGTCTTATAAGAATATTGGAGAAAGCATTGTT 3219
Query 3103 CGTCCAAGCTCACGAGGACTGAATCATTTGACTTTGATGATCAAGATTT-CTGATAATGT 3161
||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 3220 CGTCCAAGCTCACGAGGACTGAATCATCTGACTTTGATGATCAAGATTTTC-GATAATGT 3278
Query 3162 GTATGCTAACAAGGAGATAATCGAAGGTGAGAAGGAGAACAAAGATATAGTGAGCTTACA 3221
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 3279 GTATGCTAACAAGGAGATAATCGAAGGTGAGAAGGAGAACAAGGACATAGTGAGCTTACA 3338
Query 3222 ACGTATTGGGAAAACACTGAAAATTGGGAATGAAACCTTCGAGGATCTAGATGAGGTAAT 3281
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3339 ACGTATTGGGAAAACATTGAAAATTGGGAATGAAACCTTCGAGGATCTAGATGAGGTAAT 3398
Query 3282 GGATCGGTATGTTGATCCTTTGGTAACTCATCTTATGACAATGCTAAACCACCGGAAATT 3341
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 3399 GGATCGGTATGTTGATCCTTTGGTAACTCATCTTATGACAATGCTAAACTACCGCAAATT 3458
Query 3342 TCGGACTGGGACAAAATCGGAAATAGATGATCTTCTTCGGGTTGAGAAGGGTGTGAATCC 3401
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 3459 TCGGACTGGGACAAAGTCGGAAATAGATGATCTTCTTCGGGTTGAGAAGGGCGTAAATCC 3518
Query 3402 GAAAATGGTAGTTTACAGTTTTGGTGTTTCTCATGAACATCCAGGGAGCTTTATATTGTC 3461
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3519 GAAAATGGTAGTTTACAGTTTTGGTGTTTCGCATGAACATCCAGGGAGCTTTATATTGTC 3578
Query 3462 TTACATACGATCCGCAAATCCGCACCACGAGTACATCGGTCTATACCCTAAGGGATTCAA 3521
|||||||||||||||||| |||||||| ||||| |||||| ||||||| |||||||||||
Sbjct 3579 TTACATACGATCCGCAAACCCGCACCATGAGTATATCGGTTTATACCCAAAGGGATTCAA 3638
Query 3522 GTTCAGGAAAAGAATGTTTGGGGATCTTGATAAACTGGCTGCTTATTTCAAGAGACATAT 3581
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
Sbjct 3639 GTTCAGGAAAAGAATGTTTGGAGATCTTGATAAGCTTGCTGCTTATTTCAAGAGACATGT 3698
Query 3582 CGATAATCAA 3591
||| |||||
Sbjct 3699 TGATGATCAA 3708
> Ahg925610 jgi|Araly1|925610|scaffold_201171.1
Length=4961
Score = 2575 bits (1394), Expect = 0.0
Identities = 2985/3722 (80%), Gaps = 233/3722 (6%)
Strand=Plus/Plus
Query 9 GAAGAAAATGAAATATAAGCAAGGAACTGAT-TCGAACGCTTTACGATACGCTAATGATG 67
||| |||| ||||| || ||| ||| | ||| | || ||| | ||| ||||||||||
Sbjct 621 GAAAAAAAAGAAATTTAGGCAGGGATCAGATAT-TAATGCTATGCGAGACGCTAATGAAA 679
Query 68 TATTTGGTGATCCTGAAGAATTGTTGA-AACTTCGGAAAAAGGATTT-GAAGTATAACGA 125
||||||||||| ||| ||||| |||| || |||| ||||||| ||| | | | || ||
Sbjct 680 TATTTGGTGATGTTGACGAATTATTGACAA-TTCGCAAAAAGGGTTTGGCA-TCTAGTGA 737
Query 126 AAAGATCGAAAGAAAGTTAGAAGATGAGTTTGAACCAA-TGGTTCTCTCTGAGAAGTATA 184
|| ||| ||||||| | | ||||||||||||||||||| | ||||| |||||||| ||||
Sbjct 738 AAGGATGGAAAGAAGGCTCGAAGATGAGTTTGAACCAACT-GTTCTTTCTGAGAAATATA 796
Query 185 TGAC-GGAGAAAGATGATGAAATTAGGAAGCTTGATGTTCCTGAGAGAATGCAGATATTT 243
|||| || |||||||||||||||| | |||||||| ||||||||||||||||||||| |
Sbjct 797 TGACAGG-GAAAGATGATGAAATTCGCCAGCTTGATATTCCTGAGAGAATGCAGATATCT 855
Query 244 GAAG-AAGCCATTGGAATTG-TTTCC-CTAGATGACATGAGCATTCAAGAAGAGAGCAAC 300
|||| ||| || |||| | ||| ||||||| || |||||| ||||||| |||||
Sbjct 856 GAAGAAAG-CACCGGAA--GCCCTCCTGTAGATGAAATTAGCATTGAAGAAGAAAGCAAT 912
Query 301 TGGATTTATGCTCGA-TTG---CT-T-C---AAGAA-C-------A------A-GGGCAG 336
||||| ||||||| | ||| || | | ||||| | | | |||| |
Sbjct 913 TGGATATATGCTCAACTTGCTTCTCTACTTAAAGAATCTGATGGAACTTTTGATGGGCGG 972
Query 337 GGTTGT-TTGATTAATAAGGATGACATTGTGAAGTTTTTAGAGATGTTTCATGTGCAGAA 395
|||| | | | |||||||||||||||| | || ||||| ||| | ||||||||||||
Sbjct 973 GGTT-TCTCGGTTAATAAGGATGACATCGCAAAATTTTTGGAGCTACATCATGTGCAGAA 1031
Query 396 GTTAGAGATACCGTTTATAGCTATGTATCGGAAGGAGCAGTGTCGGAGTTTATTGGACAG 455
||||||||||| |||||||||||||| || |||||||| || ||||| || |||||||
Sbjct 1032 ATTAGAGATACCCTTTATAGCTATGTACCGAAAGGAGCAATGCCGGAGCTTGTTGGACA- 1090
Query 456 TTCTGATGATGATCATGATGGTAGTGATTTCAATCTTGACAAGAAGCTTGAGACCAAGTG 515
||| ||||| | |||| | | | ||||| |||||||| | ||||||||||||
Sbjct 1091 --CTGGTGATG-T--TGAT-G--GCG---CCAATCAAGACAAGAAACCTGAGACCAAGTG 1139
Query 516 GCATAAAGTCTTGTGGATGATTCAAGATTTGGAT-AGAAAGTGGGTTCTTCTGCGGAAAA 574
|||||| ||||| ||||||||||| || |||||| || |||||| | ||||| || ||||
Sbjct 1140 GCATAAGGTCTTCTGGATGATTCATGACTTGGATAAG-AAGTGGCTCCTTCTTCGAAAAA 1198
Query 575 GGAAAACCGCGTTGTTTGGTTACTATACCAAACGTTTTGAAGAAGAAACCT-GCA-TGTC 632
|||||| |||||| |||||||||||| ||||||| ||||||| | || | | |||
Sbjct 1199 GGAAAATGGCGTTGCATGGTTACTATACAAAACGTTACGAAGAAG-AGTCTAGGAGGGTC 1257
Query 633 --TGAT----CT-G----AA--T-AA-GAG--TCTTTTTGAATCTGTTATTAAGTCTCTT 675
|||| || | || | || || |||||||||||| || |||||||| |||
Sbjct 1258 TATGATGAAACTAGACTTAATCTAAACCAGTATCTTTTTGAATCAGTCATTAAGTCCCTT 1317
Query 676 CAAGCGGCGGAGACAGAGAGAGAAGTTGATGATGTAGACTCAAAGTTCAACTTGCATTTT 735
||| || || ||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1318 AAAGTTGCAGAAACAGAAAGAGAAGTTGATGATGTAGATTCCAAGTTCAACTTGCATTTC 1377
Query 736 CCTCATTGTG--A---G-ATCGATGAAGGACAGTACAAGAGGCCGAATAGGAAATCGCAA 789
|||| ||| | | | |||||||| ||||| ||||||||||| |||||||| |||
Sbjct 1378 CCTCCCGGTGAAATTGGTGTTGATGAAGGGCAGTATAAGAGGCCGAAAAGGAAATCACAA 1437
Query 790 TATAGCATCTGCAGCAAATTTGGGAT-TAAGGAATTTGCAAACAAGTTTGGTTATAGCGC 848
|||||||||||||| ||| ||| | | ||| |||||||||| ||||| ||||| ||
Sbjct 1438 TATAGCATCTGCAGTAAAGCGGGGCTCT-GGGAGGTTGCAAACAAATTTGGGTATAGTGC 1496
Query 849 TGAGCAATTGGGACTAGCGTTGTCTCTTGAGAAAGTTTTTGTTGATGAGCTTGAAGATGC 908
||||||||||||||| || ||||| ||| ||||| | |||||||| ||||| || ||
Sbjct 1497 TGAGCAATTGGGACTTGCATTGTC-CTT-AGAAA-AACTGGTTGATGAACTTGAGGACGC 1553
Query 909 AAAGAAAACACCAGAGGAGATGGCAT-TGAACTATGAGTGTGCAATGTTTGGAGATTCTC 967
|||| ||||||||||||||||||| | ||||| || ||| |||||||||| | || |||
Sbjct 1554 AAAGGAAACACCAGAGGAGATGGC-TCAGAACTTTGTGTGCGCAATGTTTGAAAATCCTC 1612
Query 968 AAGCTGTTCTTAAAGGTGCAAGGCATATGGCTGCGGTTGAGATAAGCTGCGAGCCATCGA 1027
| || ||||| || |||||| ||||||||||||| |||||||||| || |||||||| |
Sbjct 1613 AGGCCGTTCTGAAGGGTGCACGGCATATGGCTGCAATTGAGATAAGTTGTGAGCCATC-A 1671
Query 1028 -TTAGAAAGTATGTTCGTGGAATTTTTATGGAGAATGCAGTAGTCTCAACGAGTCCAACA 1086
| | ||||||||| ||||| |||| ||||||||||||||| |||||||| |||||||||
Sbjct 1672 GTCAAAAAGTATGTCCGTGGCATTTATATGGAGAATGCAGTGGTCTCAACAAGTCCAACA 1731
Query 1087 CCAGATGGGAATGTGGTTATAGATTCCTTCCATCGGTTTTCT-GCGGTTAAGTGGTTAAG 1145
||||||| ||| || |||||||| ||||||| ||||||| || ||||||||||| |
Sbjct 1732 GCAGATGGAAATACAGTAATAGATTCGTTCCATCAGTTTTCTGGC-ATTAAGTGGTTACG 1790
Query 1146 CGAGAAGCCATTGAGAAAGTTTGATGGTGTACAATGGCTTCTCATTCAGAAAGCAGAAGA 1205
|| ||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1791 TGAAAAGCCATTGAGCAAGTTTGAGGGTGCACAATGGCTTCTCATTCAGAAGGCAGAAGA 1850
Query 1206 GGAGAAGCTTCTTCAAGTAACTTTCAAGCTGCCTGAGAATCAGATGAATAGGATAATTAG 1265
|||||| |||||||||||||| |||||||||||||||||| | ||||||||| |||||||
Sbjct 1851 GGAGAAACTTCTTCAAGTAACCTTCAAGCTGCCTGAGAATTACATGAATAGGCTAATTAG 1910
Query 1266 TGAATGCAGTGAACACTATCTAAGTGTTGGTGTTAGTAAGTATGCTCAACTCTGGAACGA 1325
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1911 TGACTGCAATGAACACTATCTAAGTGTTGGTGTTAGTAAGTATGCTCAACTCTGGAATGA 1970
Query 1326 GCAGAGGAAA-TTGATACTGGAGGATGCGGTTCATGGTTTTGTTTTGCCGTCAATGGAGA 1384
||| || ||| |||||| |||||||||| |||||| |||| ||||||| ||||||||||
Sbjct 1971 GCAAAG-AAAGTTGATAGTGGAGGATGCACTTCATGCTTTTCTTTTGCCATCAATGGAGA 2029
Query 1385 AAGAAGCAAGATCCTTGCTAACTAGCAGAGCGAAGACTCAGTTGCTTTCAGAGTATGGAC 1444
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2030 AAGAAGCAAGATCCTTGCTAACTAGCAGAGCGAAGAGTCGGTTGCTTTCAGAGTATGGAC 2089
Query 1445 AGGTTTTATGGAACAAAGTGTCTTCAGGGCCATATCGAAGGAAT-AA-T--A-AT-ACCT 1498
||| ||| |||||||| |||||| |||||||||||| || ||| || | | || | |
Sbjct 2090 AGGCTTTGTGGAACAAGGTGTCTGCAGGGCCATATCAAAAGAAAGAAATGGACATGAATT 2149
Query 1499 CGGAGGAGGAAGCTGCACCGAGGGTCCTAGCTTGTTGTTGGGGACCTGGAAATCCAG-AA 1557
| || ||||||||||||||||||||| | || |||||||||||||||||||| ||| ||
Sbjct 2150 CAGATGAGGAAGCTGCACCGAGGGTCATGGCATGTTGTTGGGGACCTGGAAAGCCACCAA 2209
Query 1558 ACTACATTTGTGATGCTTGATTCATCAGGAGAGCTGGTTGATGTGCTTTACT-CAGGTTC 1616
| ||||||||||||||| || |||||||| ||| || |||| |||||||| | | || ||
Sbjct 2210 A-TACATTTGTGATGCTGGACTCATCAGGCGAGGTGCTTGACGTGCTTTA-TGCTGGATC 2267
Query 1617 CATTGGATTGCGGTCTCGGGATGTAAATGACCAGAAACGTaaaaaaa-TGGATCAAGATC 1675
| | || ||| |||| |||| || |||||| |||||||||| | || | || ||||
Sbjct 2268 CCTCACATCGCGATCTCAAAATGTCAACGACCAGCAACGTAAAAAGAGTG-ACCAGGATC 2326
Query 1676 GT-TTTCTAAAGTTTATAA-GAGACCATCAACCAG-ATGTTTTGGCTTTAGCAGCTGTTA 1732
|| ||| |||||||||| | | ||||| ||||| | ||||| ||||||||| |||||| |
Sbjct 2327 GTGTTT-TAAAGTTTATGATG-GACCACCAACC-GCATGTTGTGGCTTTAGGAGCTGTCA 2383
Query 1733 ATTTGAGTTGTG-TACGCCTGAAGGATGAGATTTATGAGG-CTATATTCCAAATGGTGGA 1790
||||| |||| | || ||||||||||| |||||||||| | |||||||| ||||||||
Sbjct 2384 ATTTGTCTTGTACT-CGTCTGAAGGATGATATTTATGAGGTC-ATATTCCAGATGGTGGA 2441
Query 1791 AGAGCTGCCGTTGAATTATGTAG-ATGATAGGATTTATGATTTTC-CATTGGTTTATGCG 1848
|| || | || |||| | | || |||| ||||||| ||||| |||||| |
Sbjct 2442 GGAAAAACC-TAGAG--ATGTCGGAC-ATGGGATGGATGATTTAAGCATTG-TTTATGTG 2496
Query 1849 GATGAATCTCTTCCTAGGCTATACGAAAATTCTAGAATCTCAAGTGAACAACTACCTCAA 1908
|||||||| |||||||||||||| ||||||||| ||||||| ||||||| ||||||||
Sbjct 2497 GATGAATCGCTTCCTAGGCTATATGAAAATTCTCGAATCTCGGGTGAACAGCTACCTCAG 2556
Query 1909 CAAG-CAGGAATTGTGAAACGCGCAGTTTCTCTTGGACGTTATCTCCAGAATCCATTAGC 1967
|| | |||| || |||||||| |||||| |||||||||| ||||||||||||||| ||||
Sbjct 2557 CA-GTCAGGGATCGTGAAACGTGCAGTTGCTCTTGGACGCTATCTCCAGAATCCACTAGC 2615
Query 1968 AATGATCTCAACTTTATGCGGTCCAGGTAGAGATATTCTGTCTTGGAAGCTTCATTCTTT 2027
||| | |||||||||||||||||||| | || ||| ||||||||||||||||| | ||
Sbjct 2616 GATGGTGGCAACTTTATGCGGTCCAGGTCGGGAAATTTTGTCTTGGAAGCTTCATCCGTT 2675
Query 2028 TCAAGA-TTTTCTTGATCCAGATGAGAAGTATGAGA-TGGTTGAACAAGTTATGGTTGAC 2085
| || ||||||| | | ||| |||||||||| || ||||||| || ||||||||||||
Sbjct 2676 GGA-GAATTTTCTTCAGCTAGACGAGAAGTATG-GAATGGTTGAGCAGGTTATGGTTGAC 2733
Query 2086 ATAACGAATCAAGTTGGAATCGACATTAATCT-GGCTGCGAGCCATGAATGGCTT-TTTT 2143
|| || || || ||||||||||| ||||| || ||| || |||||||| ||| || ||||
Sbjct 2734 ATTACAAACCAGGTTGGAATCGATATTAA-CTTGGCAGCTAGCCATGAGTGG-TTCTTTT 2791
Query 2144 CTCCTTTACAGTTTGTTTCAGGTCTTGGTCCTAGGAAAGCTGCATCTTTGCAGAAGTCTC 2203
||||||||||||| | || || ||||| ||| ||||||||||||| ||||||| ||| |
Sbjct 2792 CTCCTTTACAGTTCATATCTGGACTTGGGCCTCGGAAAGCTGCATCCTTGCAGAGGTCGC 2851
Query 2204 TTGTTAGAGCTGGTTCGATATTTGTCCGCAAGGAACTGATAAAT-CATGGGA-TTGGTAA 2261
|||| ||||||||||| ||||||||||||||||| || |||| | ||||| | |||||||
Sbjct 2852 TTGTAAGAGCTGGTTCAATATTTGTCCGCAAGGACCTAATAA-TGCATGG-ACTTGGTAA 2909
Query 2262 AAAGGTATTCGTAAATGCAGCTGGTTTCTTACGGATTCGTAGGAGCGGGTTGGCTTG-TA 2320
|||||| || ||||||||||| |||||||| || || || || || ||| ||||| | ||
Sbjct 2910 AAAGGTTTTTGTAAATGCAGCCGGTTTCTTGCGCATCCGCAGAAGTGGGCTGGCT-GCTA 2968
Query 2321 GTAGCAGCCAATTTATTGATCTG-TTGGATGACACTAGAATACATCCCGAATCATACGGT 2379
||||||| |||||||| || || ||||||||||| ||||| |||||||| ||||| ||
Sbjct 2969 GTAGCAGTCAATTTATCGA-CTTATTGGATGACACCAGAATCCATCCCGAGTCATATAGT 3027
Query 2380 CTTGCGCAAGAATTGGCGAAAGATGTTTATGCTCATGATACTGTAAGAGGTGATG-A--- 2435
|||||||||||||||||||||||| | |||| | | ||| || ||||||||| |
Sbjct 3028 CTTGCGCAAGAATTGGCGAAAGATATATATGATGAGGAT---GTCAGAGGTGATTCAAAT 3084
Query 2436 G--GATGA---TGCAATAGAGATGGCGATAGAGCATGTGAGAGAT-GAGCCAGCTTCTTT 2489
| ||||| ||||||||| ||||| || ||||||||||||||| | ||||||||||||
Sbjct 3085 GATGATGAGGATGCAATAGAAATGGCTATTGAGCATGTGAGAGATCG-GCCAGCTTCTTT 3143
Query 2490 GAGGAAAA-TCGTTCTTGATGAGTA-CTTGAGAAGCAAGAACCAAGAGAATAAGAAGGAA 2547
||| |||| | || |||||||| || |||| | ||||||| | |||||||||||||||
Sbjct 3144 GAG-AAAAGTTGTCCTTGATGAATATCTTGCCA-GCAAGAAACGGGAGAATAAGAAGGAA 3201
Query 2548 ACTTATAGTC--TGATCATGAGAGAATTAAGCTGTGGATTTC-AGGATTGGCGGAGT-CT 2603
|||||||| | | ||||| ||||||||||||||||| |||| |||||||||||| | |
Sbjct 3202 ACTTATAG-CAAT-ATCATAAGAGAATTAAGCTGTGG-TTTCCAGGATTGGCGGA-TACC 3257
Query 2604 GTTTAAAGAGGTTGATTC-AGATGAGGAGTTTTATATGATTTCAGGTGAAACCAAAGAAA 2662
||||||||| | || |||||| || ||||| ||||||||||||||||| | || |
Sbjct 3258 ATTTAAAGAGCCA-AGTCCAGATGAAGAATTTTACATGATTTCAGGTGAAACTGAGGACA 3316
Query 2663 CTATTGGTGAAGGG-AGGATTGTGCAGGCCACTGTTAAGAAAGTG-ACAAGTGGTAA-AG 2719
| || | ||| ||| || ||||| ||||||| |||| || | || | || ||| || ||
Sbjct 3317 CCATAGCTGA-GGGCAGAATTGTCCAGGCCAGTGTTCGGAGATTGCAGAA-TGG-AAGAG 3373
Query 2720 CCAAATGTGTATTAGATTGTGGATTACCTGGGATTCTCT-TGAAGGAAGATTACTCAGAT 2778
||| |||||||||||||| ||| ||| ||||||| || | |||||||||||| |||||||
Sbjct 3374 CCATATGTGTATTAGATTCTGGGTTAACTGGGATGCT-TATGAAGGAAGATTTCTCAGAT 3432
Query 2779 GATGGTAGAGATATCGTTGATTTGTCTAACAAACTGTGTGAAGGCGATATCGTTACTTGC 2838
||||| |||||||| ||||| ||| | || ||||| |||||||||||| | || |||
Sbjct 3433 GATGGGAGAGATATTGTTGACTTGGCGGACCAACTGAAAGAAGGCGATATCCTAACATGC 3492
Query 2839 AAGGTCAAATCGATTCTAAAGCAAAGGTATCATGTGTTACTTGTCTGCAAAGAAAGCGAA 2898
||| |||||||||||| |||||| |||||||| ||||| ||| | ||||||||||| |||
Sbjct 3493 AAGATCAAATCGATTCAAAAGCAGAGGTATCAAGTGTTCCTTATTTGCAAAGAAAGTGAA 3552
Query 2899 ATGAGAAAGCA-CAGG-A--ATC-T--CGGGGATGTCGATGATTATTACCACGAGGAGAA 2951
|||||||| || ||| | | | | | | |||| |||| ||||||||| ||||| |
Sbjct 3553 ATGAGAAA-CAACAGACACCAGCATAACCAGAATGTGGATGCTTATTACCATGAGGATA- 3610
Query 2952 ACGAAATAGTGTCCTGATAG-AGAAAGAGAAAGTTCCTAAAG-AAAA-GA-------AGC 3001
|||| ||| ||| | | | | |||||||||| || |||| |||| || ||
Sbjct 3611 --GAAACAGTCTCCAGCTTGTA-AAAGAGAAAGCTCG-AAAGGAAAAAGAGCTGGTGAGG 3666
Query 3002 A-G--TTT-AAGTCTCGGATGATTGTTCATCCTCGGTTTCAGAACATCACTGCCGAGCAA 3057
| | ||| ||||||||||||||||| ||||| || |||||||| ||||| || || |||
Sbjct 3667 AAGCATTTTAAGTCTCGGATGATTGTCCATCCCCGCTTTCAGAATATCACAGCTGACCAA 3726
Query 3058 GCAACAGTGTATTTGTCTGATAA-GAATATTGGAGAAAGCATTGTTCGTCCAAGCTCACG 3116
||||||| |||||||||||| || || | ||||||||||||||||||||||||| || ||
Sbjct 3727 GCAACAGAGTATTTGTCTGACAAAGACT-TTGGAGAAAGCATTGTTCGTCCAAGTTCTCG 3785
Query 3117 AGGACTGAATCATTTGA-CTTTGATGATCAAGATTTCTGATA-ATGTGTATGCTAACAAG 3174
|||||| || | ||| | |||||| | ||||||||| |||| | || || ||| |||||
Sbjct 3786 AGGACTCAA-CTTTTTAACTTTGACGCTCAAGATTTATGATGGA-GTTTACGCTCACAAG 3843
Query 3175 GAGATAA-TCGAAGGTGAGAAGGAGAACAAAGATAT-AGTGAGCTTACAACGTATTGGGA 3232
|||||| | ||||||| ||| || ||||| || || | ||| |||| |||||||||
Sbjct 3844 GAGATAGCT-GAAGGTGGGAAAGAAAACAAGGACATCACA-AGCCTACAGTGTATTGGGA 3901
Query 3233 AAACACTGAAAATTGG-GAATGAAACCTTCGAGGATCTAGATGAGGTAATGGATCGGTAT 3291
| || |||| |||||| || || ||||||||||||||||||||||| |||||||| |||
Sbjct 3902 AGACCCTGACAATTGGAGAG-GACACCTTCGAGGATCTAGATGAGGTCATGGATCGATAT 3960
Query 3292 GTTGATCCTTTGGTAACTCATCTTATGACAATGCTAAACCACCGGAAATTTCGGACTGGG 3351
||||||||||||||| ||||||||| ||| ||||| ||| | |||||||| || | |||
Sbjct 3961 GTTGATCCTTTGGTATCTCATCTTAAGACCATGCTCAACTATCGGAAATTCCGAAAGGGG 4020
Query 3352 ACAAAATCGGAAATAGATGATCTTCTTCGGGTTGAGAAGGGTGTGAATCCGAAAATGG-T 3410
| ||||| ||| |||||||||||||| || | |||||||| | ||||| || | |
Sbjct 4021 TCCAAATCAGAAGTAGATGATCTTCTTAGGATCGAGAAGGGAGAAAATCCTTCAA-GAAT 4079
Query 3411 AGTTTACAGTTTTGGTG-TTTCTCATGAACATCCAGGGAGCTTTATATT--GTCTTACAT 3467
||||||| ||||||| | |||| |||||||||||||| | |||| |||| |||||||||
Sbjct 4080 AGTTTACTGTTTTGG-GATTTCACATGAACATCCAGGCA-CTTT-TATTCTGTCTTACAT 4136
Query 3468 ACG-ATCCGCAAATCCGCACCACGAGTACATCGGTCTATA-CCCTAAGGGATTCAAGTTC 3525
| | | | |||| || || || ||||| || ||| |||| ||| |||||||| ||||||
Sbjct 4137 AAGGAGCA-CAAACCCACATCATGAGTATATAGGTTTATATCCC-AAGGGATTTAAGTTC 4194
Query 3526 AGGAAAAGAATGTTTGGGGATC-TTGATAAACTGGCTG-CTTATTTCAAGAGACATATCG 3583
|||||||| ||||||| ||| | |||||| || | || | || ||| |||| ||||| |
Sbjct 4195 AGGAAAAGGATGTTTGAGGA-CATTGATAGGCTTG-TGGCATACTTCCAGAGGCATATTG 4252
Query 3584 AT 3585
||
Sbjct 4253 AT 4254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135751362891
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5