BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63220.1

Length=750
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315086 jgi|Araly1|315086|fgenesh1_pm.C_scaffold_2000119           737    0.0  
  Ahg907099 jgi|Araly1|907099|Al_scaffold_0002_180                     211    5e-54


> Ahg315086 jgi|Araly1|315086|fgenesh1_pm.C_scaffold_2000119
Length=444

 Score =  737 bits (399),  Expect = 0.0
 Identities = 429/444 (97%), Gaps = 0/444 (0%)
 Strand=Plus/Plus

Query  99   ATGCCTCATGGAACTCTTGAAGTTGTTCTTGTCAGCGCCAAAGGTCTCGAGGACGCAGAT  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCCTCATGGAACTCTTGAAGTTGTTCTTGTCAGCGCCAAAGGTCTCGAGGACGCAGAT  60

Query  159  TTTCTGAATAACATGGATCCTTATGTGCAACTCACTTGTCGGACTCAAGATCAGAAGAGC  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTTCTGAATAACATGGATCCTTATGTGCAACTCACTTGTCGGACTCAAGATCAGAAGAGC  120

Query  219  AACGTTGCAGAAGGAATGGGGACAACTCCGGAATGGAATGAGACATTTATCTTCACTGTC  278
            |  ||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct  121  AGTGTTGCAGAAGGGATGGGCACTACTCCTGAATGGAATGAGACATTTATCTTCACTGTC  180

Query  279  TCTGAAGGAACTACAGAGTTAAAAGCGAAAATCTTCGACAAAGATGTCGGTACAGAGGAT  338
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  181  TCTGAAGGAACTACAGAGTTAAAAGCGAAAATCTTCGACAAAGATGTCGGCACTGAGGAT  240

Query  339  GATGCGGTTGGTGAAGCAACTATTCCGTTGGAGCCGGTTTTCGTGGAAGGAAGTATTCCA  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GATGCGGTTGGTGAAGCAACTATTCCGTTGGAGCCGGTTTTCGTGGAAGGAAGTATTCCA  300

Query  399  CCAACTGCATACAATGTGGTGAAAGATGAAGAGTACAAAGGAGAGATTTGGGTGGCTCTC  458
            ||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||
Sbjct  301  CCAACTGCATACAATGTGGTGAAAGATGAAGAGTACAAAGGCGAGATTTGGATCGCGCTC  360

Query  459  TCCTTCAAGCCCTCGGAAAACCGAAGCAGGGGTATGGACGAGGAGTCCTATGGGGGCTGG  518
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct  361  TCCTTCAAGCCCTCGGAAAACCGAAGCAGGGGTATCGACGAAGAGTCCTATGGAGGCTGG  420

Query  519  AAAAACTCTGAAGCATCATACTAA  542
            ||||||||||||||||||||||||
Sbjct  421  AAAAACTCTGAAGCATCATACTAA  444


> Ahg907099 jgi|Araly1|907099|Al_scaffold_0002_180
Length=606

 Score =  211 bits (114),  Expect = 5e-54
 Identities = 130/138 (94%), Gaps = 0/138 (0%)
 Strand=Plus/Plus

Query  405  GCATACAATGTGGTGAAAGATGAAGAGTACAAAGGAGAGATTTGGGTGGCTCTCTCCTTC  464
            |||| |||||||||||||||||||||||||||||| ||||||||| | || |||||||||
Sbjct  469  GCATCCAATGTGGTGAAAGATGAAGAGTACAAAGGGGAGATTTGGATCGCGCTCTCCTTC  528

Query  465  AAGCCCTCGGAAAACCGAAGCAGGGGTATGGACGAGGAGTCCTATGGGGGCTGGAAAAAC  524
            ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct  529  AAGCCCTCGGAAAACCGAAGCAGGGGTATCGACGAAGAGTCCTATGGAGGCTGGAAAAAC  588

Query  525  TCTGAAGCATCATACTAA  542
            ||||||||||||||||||
Sbjct  589  TCTGAAGCATCATACTAA  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27639114825


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5