BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63240.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475021 jgi|Araly1|475021|fgenesh2_kg.2__151__AT1G63240.1 2761 0.0
> Ahg475021 jgi|Araly1|475021|fgenesh2_kg.2__151__AT1G63240.1
Length=1756
Score = 2761 bits (1495), Expect = 0.0
Identities = 1672/1759 (95%), Gaps = 6/1759 (0%)
Strand=Plus/Plus
Query 18 CTTCTTCTGTCGTTCTCAGAAACACAGAGTGTCAAAACCTGGTCACCGGaaaaaaaaT-A 76
||||||||||| |||||||| ||||| |||| ||||||||||||||||| ||||||| |
Sbjct 1 CTTCTTCTGTCTTTCTCAGACACACACAGTGACAAAACCTGGTCACCGG-CAAAAAATAA 59
Query 77 AACTCTGTTTTCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AACTCTGTTTCCAGACCGAATTTTCTCACCGGAAAATGTTACGTCAGCTTCCACCAACTA 119
Query 137 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTACGGCGGACGCCACGCCGGATTGGCTTCCCGTCGGTTGGATTGCTCACTCTACAGTTC 179
Query 197 TAAAACGCGGTCGTCAAACTAGGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAAAACGCGGTCGTCAAACTAAGACATACACGCAATTGAGAACAGGGAAAAAGTTATCTA 239
Query 257 CAAAGGATCAAGTTCTTGAGTACATTAAAATGGAGAAAATACGAGAAAAACGAGAAGCAG 316
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 240 CAAAGGATCAAGTTCTTGAGTACATAAAAATGGAGAAAATTCGAGAAAAACGAGAAGCAG 299
Query 317 GAATCAAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAAAGAGACCGCAAGTGAAA 376
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 300 GAATCCAGAGGAATAAAGCAAGTTTAAAAGCCTTACAAGATAGAGAGACCGCAAGCGAAA 359
Query 377 GGCCGTCGTGGCTTCCGGATGAAAGGAAAGCAGAGTTGGAGATTGGTTATGTTGGTGGAA 436
||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||
Sbjct 360 GGCCGTCGTGGCTTCCGGATGAAAGGAAACCAGAGTTGGGGATTGGTTCTGTTAGTGGAC 419
Query 437 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAACACCAATCCAAAGGAGACAG 496
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 ACCCTTACAAGATGAATGTGAACACATCAAATGATTTTAAAACCAATCCAAAGGAGACAG 479
Query 497 TGGTATTAGATGAGAACTCTATGGAATCTGAAGATTCATCGGGTGAAGTATACGAAACCG 556
||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 480 TGGTATTAGATGAGAACACTATAGAATCTGAAGATTCATCGGGTGAAGAATACGGAACCG 539
Query 557 GGTGTAATGAAATTACTTATGCAATTGAGGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 616
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 GGTGTAATGAAATTACGTATGCAATTGACGAGGATGAAGAAGATTTTTCAGAGAGGGAAT 599
Query 617 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGTCGAAAATGTGGAGAATTTCTCTAACATAACCTCTACTCCTCTACGGTCACAGCCAG 659
Query 677 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACACAATGTGTGTTTGAAGATGAGGATC 736
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 AAAGAATGCAGAAATTGGAGTCTCGAGCAAAAACGCAATGTGTGTTTGAAGATGAGGATA 719
Query 737 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGACTTCAAAAGAAGGAAATGGTT 796
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGAGTAGTGACAGTGACAACAAACTTCCAGAAGCTGAGATTTCAAAAGAAGGAAATGGTT 779
Query 797 TGGGAGAGGGTCATGTTGTATCTAACCTAGTCGAGTCTTTTGAAAAGAA-AACCTCGCAT 855
||||||||| || | |||||||||||||||| |||||||||||| | || ||| ||||||
Sbjct 780 TGGGAGAGGCTCGTATTGTATCTAACCTAGTTGAGTCTTTTGAAGATAAGAAC-TCGCAT 838
Query 856 GGTGTTATGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCCGGTTTGACTGGATCATTA 915
| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 839 GATGTTGTGGTTGAGTGTGATGATAAGGCGAGGGAGATCCCGGGTTTGACTGGGTCATTA 898
Query 916 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTGTTGAAATCAACCTGGACTGTGAACCTGCAAGTGATAGTTTGGTAGAGAAGAATTGG 958
Query 976 AATAAAAGTGAGAGCGATGAAACAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1035
|| ||||||| |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGAAAAGTGGGAGCGAAGGAATAGGAACAAGAAACATTGAGATCATTGACCTAGAGAGT 1018
Query 1036 GACGTGATTCACATAAGTGGCTCATCAAAAGCTGTTGAAGTGACTCAGGAATCAGGCGAT 1095
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 1019 GACGTGATTCACATAAGTGGCTCATCAAAAGTTGTTGAAGTGACTCGGGAATCTGGCGAT 1078
Query 1096 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGACTGGAGAAGTTCGGTC 1155
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 1079 ACAAGTAAAGAGCCTCTGAAAGCTCAGGAAGAACCTGATAACGAGTGGGGAAAATCGGTC 1138
Query 1156 TTCTTTCCAGACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAGTTCTAATGCT 1215
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 TTCTTTCCAAACAGAGAAGCCCCTTCACATTCTGTACTTGTCTTTGAAAATTCTAATGCT 1198
Query 1216 AGACCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAACCCCGCAAGAGAAG 1275
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1199 AGATCATCTGTAGAAGATCTTAGCAACACCATTGAGCTTGGTTTAAACCCGCAAGAAAAG 1258
Query 1276 AACATCAGTAGCTCTAAAAAGCGGAAGAAGAATACGGAAAGATGTGCATCTAAGAACATC 1335
||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |
Sbjct 1259 AACATCAGTGGCTCTAAAAAGCGGAAGAAGAATACGGAAACATGTTCATCTACGAACACC 1318
Query 1336 AAGAAGAAAGGCATTGAAGCACCATCCAGAAAACTTCAGAGAGGCAAAACACCATCAAGC 1395
|||||||||||||||||||||||| | | ||||||||||| |||||| |||||| |||||
Sbjct 1319 AAGAAGAAAGGCATTGAAGCACCAACTAAAAAACTTCAGAAAGGCAAGACACCACCAAGC 1378
Query 1396 AAATCGCATGGCAAGAAGGGAAGTTCGAGTGTAG-GCATGGACAAAAAACCTGATGATTG 1454
||| |||||||||||| ||||||||| |||||| | ||||||||||| ||| |||||||
Sbjct 1379 AAACCGCATGGCAAGACGGGAAGTTCAAGTGTAATG-ATGGACAAAAACCCTAATGATTG 1437
Query 1455 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCTTAAACCGTGCCCAAACTTCCCATTTGAGCCACTCACAAGATCATTTCAAGTAGAGGA 1497
Query 1515 TGACTCGGCAATCCGCATGTACTTAGAGCAACACTTTGCAGCTCCTGGGAGTGCTGATAG 1574
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1498 TGACTCGGTAATCCGCATGTACTTAGAGCAACACTTTACAGCTCCAGGGAGTGCTGATAG 1557
Query 1575 TAATCTACCTTTACCCGATTTCGGATTGCCTACCTTCTCCGACATCAAAATCTCACTTAA 1634
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 1558 TAATCTACCTTTACCCGATTTCGGATTGCCAACCTTCTCCAACATCAAAATCTCACTGAA 1617
Query 1635 TGAAGAACCTGCATTCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1694
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGAAGAACCTGCATCCAAGAAAAAGAAGTCTCCTGATCCTCCATGTGTACAAGTTGCAAG 1677
Query 1695 TTCAAACATACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACCAACAGTTGCAGGACA 1754
||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1678 TTCAAGCTTACCTAGTTGCAGTTCCATGGGTACTAGTATGCTACAAACAGTTGCAGGACA 1737
Query 1755 CTAAAGAGACACTGAGACT 1773
|||||||||||||||||||
Sbjct 1738 CTAAAGAGACACTGAGACT 1756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5