BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63245.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924638 jgi|Araly1|924638|scaffold_200199.1 350 3e-96
> Ahg924638 jgi|Araly1|924638|scaffold_200199.1
Length=284
Score = 350 bits (189), Expect = 3e-96
Identities = 227/245 (93%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 1 ATGA-AAGTTTGGAGCCAAAGATTATCGTTTCTAATCGTCATGATCTTCATTTTGGCCGG 59
|||| || ||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 22 ATGAGAA-TTTGGAGCCAAAGATTATCGTTTCTAATCGTCATGATCTCCATTTTCTCCGG 80
Query 60 GCTTCATTCCTC-TTCCGCCGGCCGCAAGCTCCCTAGTATGACGACGACGGAGGAGTTCC 118
||| |||| ||| || ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 81 GCTCCATTTCTCCTTG-GCCAGCCGCAAGCTCCCTAGTATGACCACGACGGAGGAGTTCC 139
Query 119 AGCGATTAAGTTTTGACGGCAAGAGAATATTATCGGAAGTGACCGCCGACAAGAAGTATG 178
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 140 AGCGATTAAGTTTTGACGGCAAGAGAATGTTATCGGAAGTGACCGCCGGCGAGAAGTATG 199
Query 179 ATCGGATCTACGGAGCTTCTGCTAGATTAGTTCCCAAAGGTCCTAACCCGCTTCACAACA 238
||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 200 ATCGGATCTACGGAGCTTCCGCCAGATTAGTTCCCGAAGGTCCTAACCCGCTTCACAACA 259
Query 239 AATGA 243
|||||
Sbjct 260 AATGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5