BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63250.1
Length=2612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924637 jgi|Araly1|924637|scaffold_200198.1 3659 0.0
Ahg315081 jgi|Araly1|315081|fgenesh1_pm.C_scaffold_2000114 2846 0.0
Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1 65.8 2e-09
> Ahg924637 jgi|Araly1|924637|scaffold_200198.1
Length=2467
Score = 3659 bits (1981), Expect = 0.0
Identities = 2297/2446 (94%), Gaps = 36/2446 (1%)
Strand=Plus/Plus
Query 1 ATGTACTCGTTAATTCTCCGGGAAAGATCTGGATCCATCACAGGGTCCTTATGGAACCGA 60
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 21 ATGTACTCGTTAATTCTCCGGGAACGATCTGGATCCTTCACAGGGTCCTTATGGAGCCGA 80
Query 61 ATATCCTCTCGGAACATGGGTGGTGGTCCGAGAACCTTCCCTGGAGGACTAAACAAGTGG 120
|| | ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 81 ATCTTCTCACGGAACATGGGTGGTGGTCCGAGAACCTTTCCTGGAGGACTGAACAAGTGG 140
Query 121 CAGTGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CAATGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 200
Query 181 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGAAAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 201 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGTAAT 260
Query 241 CCAGATTCTGGTGAGAAAACGGCGAAATCGAAGCAGAGTCATGGACCAATGAGCCCGAAA 300
|||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 261 CCAGATTCCGGCGAGAAAACGGCGAAATCGAAGCAAAGTCACGGACCAATGAGCCCGAAA 320
Query 301 GAACATATCAAAACCTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAGGATTTTTGGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 321 GAACATATCAAAACCTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAAGATTTGTGGAAC 380
Query 361 GAGAACGATGGTCCGGTGAAGAAATCAGATCA---A--GGG------TC-----G---A- 400
||||||||||| ||| ||||| |||||||| | | ||| || | |
Sbjct 381 GAGAACGATGGGCCGATGAAGGAATCAGATGATGGATGGGGATTATCTCGTAGGGATAAT 440
Query 401 -GA---TCAGGTTCGGATTCGATTGATTCTACTTCTAATTCGCCTATTGATGTGAGG-AG 455
|| ||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 441 GGACGGTCAGGTTCGAATTCGATTGATTCTTCTTCTAATTCGTCTATTGATGTGAGGAAG 500
Query 456 ATTAGTTTCTGCGACATGTGATTCTATGGGTAAAAATCGTGTTTTCGGTAGTAGTAGGAG 515
|||||| || ||||||| |||| |||||||| | ||| ||||||| | ||||||||||
Sbjct 501 -TTAGTTAGTGGGACATGTTATTCAATGGGTAATAGTCGGGTTTTCGATCGTAGTAGGAG 559
Query 516 AGGTTTTTCGAG--T-A-T-GA-GTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 569
|||||||||||| | | | || |||||||||||||||||||||||||||||||||||||
Sbjct 560 AGGTTTTTCGAGTATGAGTAGAGGTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 619
Query 570 AGATGACTTTGATGCTAAAAAGCTAGATACTTTGAGTCCTTTTTCTCCTAAATTTGCTGG 629
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 620 AGATGACTTTGATGCTAAAAAGTTAGATACTTTGAGTCCTTTTTCTCCTAAATTTGCGGG 679
Query 630 TACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGTTGGAGTTATAAGGAACAAAGGTTT 689
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 680 TACCAAGGAGAAAGTGAAGAGCTCGAAGAGTGTTGTTGGAGTTATAAGGAACAAAGGTTT 739
Query 690 GTTTGGAAGAAGGAAGTTTAGGAAGAACGATAGTTCAACTGAAGAGGATTCAGATGAAGA 749
|||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 740 GTTTGGGAGAAGGAAGTTTAGGAAGAATGATAGTTCTACTGAAGAGGATTCAGAGGAAGA 799
Query 750 AGGCGATGAGGGAAAGATGATA-GGTTGGATGGATATGAGGAAAACGGGAAGCAGTGCGT 808
|||||| ||||||||||||| | | |||| ||||| ||||||||| |||||||||||||
Sbjct 800 AGGCGAAGAGGGAAAGATGA-ACGTTTGGTTGGATTTGAGGAAAATGGGAAGCAGTGCGG 858
Query 809 CGTTAGGGAACCACGATATCAAGCTGACGAAAAGAGTGAATCGTAATGTCACGGATGAAG 868
| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 859 CCTTAGGAAACCATGATATCAAACTGACGAAAAGAGTGAATCGTAATGTCACGGATGAAG 918
Query 869 AGCTTTATCCTCCTTTGGATATTAATACAGTTAGAGAAGATCTCAGTAAAAGAAAATCTG 928
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 919 AGCTTTATCCTCCTTTGGATATTAATACAGTCAGAGAAGATCTTAGTAAAAGAAAATCTG 978
Query 929 TGGATAATGTAATGGAGGAGAAGCAAGAGCCTCATGACTCGATTTACAGTGCAAAAAGAT 988
|||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 979 TGGATAATGTAATGGAGGAGAACCGAGAGCCTCATGACTCGATTTACAGTGGAAAAAGAT 1038
Query 989 TTGATGAGTCTTGTATATCTCCTTTGACGCTAAAGGCACTTTCTGCGTCTGGCATTCTTA 1048
||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 1039 TTGATGAGTCTAGTATATCTCCTTTGACGCTAAAGGCGCTTTCTGTGTCTGGCATTGTTA 1098
Query 1049 AGATGACTAGAGTACAGGATGCCACTCTCTCTGAGTGCCTAGACGGTAAAGATGCATTAG 1108
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1099 AGATGACTAGAGTACAGGATGCCACTCTCTCTGAGTGCCTAGATGGTAAAGATGCATTAG 1158
Query 1109 TCAAAGCCAAAACTGGGACGGGAAAGAGCATGGCGTTTTTGCTTCCTGCAATTGAAACAG 1168
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1159 TCAAAGCCAAAACCGGGACAGGAAAAAGCATGGCGTTTTTGCTTCCTGCAATTGAAACAG 1218
Query 1169 TTCTGAAAGCTATGAACAGCGGTAAGGGCGTTAACAAAGTTGCTCCGATTTTTGCTCTTA 1228
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1219 TTCTGAAAGCTATGAACAGCGGTAATGGCGTTCACAAAGTTGCTCCGATTTTTGCTCTTA 1278
Query 1229 TCCTCTGTCCCACAAGAGAACTTGCAAGCCAGATCGCTGCAGAGGGCAAGGCTCTACTCA 1288
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1279 TCCTCTGCCCCACAAGAGAACTTGCAAGCCAGATCGCTGCAGAGGGCAAGGCTCTGCTCA 1338
Query 1289 AATTCCATGACGGGATTGGTGTTCAGACTCTAATTGGTGGTACACGCTTCAAACTTGATC 1348
||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1339 AATACCATGACGGGATCGGTGTTCAGACTCTAATTGGTGGTACCCGCTTCAAACTTGATC 1398
Query 1349 AACAACGCCTAGAATCTGAGCCATGTCAGATACTAATAGCAACTCCGGGAAGACTCTTGG 1408
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1399 AGCAACGCCTAGAATCTGAGCCATGCCAGATACTAATTGCAACTCCGGGAAGACTCTTGG 1458
Query 1409 ATCATATAGAGAATAAGTCTGGCTTAACATCGCGTTTGATGGCGCTTAAATTGTTTATAG 1468
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1459 ATCATATAGAGAATAAGTCTGGGTTAACATCGCGTTTGATGGCGCTGAAATTGTTTATAG 1518
Query 1469 TTGACGAGGCTGACCTTTTGCTAGACTTAGGATTCAGGAGAGATGTCGAAAAAATCATAG 1528
|||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 1519 TTGATGAGGCTGATCTTTTACTTGACTTAGGATTTAGGAGAGATGTCGAAAAAATCATTG 1578
Query 1529 ATTGTTTGCCTCGTCAGAGACAATCTCTTCTCTTTTCTGCAACCATTCCGAAAGAGGTCC 1588
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1579 ATTGTTTGCCTCGTCAGAGACAATCTCTTCTCTTTTCCGCAACCATTCCAAAAGAGGTCC 1638
Query 1589 GTCGAGTCTCACAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGGCTCG 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1639 GTCGAGTCTCACAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGTCTTG 1698
Query 1649 GTTGTGTAGAGACTCATGATAAGGTGAGGCAATCTTGTATTGTTGCTCCACACGAATCTC 1708
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1699 GTTGTGTAGAGACTCATGATAAGGTGAAGCAATCTTGTATTGTTGCTCCACACGAATCTC 1758
Query 1709 ATTTCCACTTAGTACCTCATCTTCTAAAAGAGCACATCAACAACACGCCTGATTATAAGA 1768
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1759 ATTTCCACTTGGTACCTCATCTTCTAAAAGAGCACATCAACAACACGCCTGATTACAAGA 1818
Query 1769 TAATAGTCTTTTGCTCAACCGGTATGGTAACATCACTGATGTATACTCTACTCCGGGAAA 1828
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1819 TAATAGTCTTTTGCTCAACCGGTATGGTAACATCACTGATGTATACTCTGCTCCGGGAAA 1878
Query 1829 TGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTCAGCTCCATAGAACACGTGTAT 1888
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TGAAATTGAGCGTTAGGGAGATTCATGCTAGAAAACCTCAGCTCCATAGAACACGTGTAT 1938
Query 1889 CAGACGAGTTTAAGGAATCAAATAGACTGATTCTT-GTCACATCTGATGTATCTGCTCGT 1947
|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1939 CAGACGAGTTTAAGGAATCAAAAAGACTGATT-TTGGTCACATCTGATGTATCTGCTCGT 1997
Query 1948 GGAATGAACTATCCAGATGTTACTTTGGTTATTCAGGTCGGTATACCGAGTGACAGAGAA 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 GGAATGAACTATCCAGATGTTACTTTGGTTATTCAGGTCGGTATACCGAGTGACAGAGAA 2057
Query 2008 CAGTATATACATCGACTAGGTAGAACTGGAAGAGAAGGAAAAGGAGGAGAAGGATTGCTT 2067
|||||||||||||| || |||||||| || |||||||| |||||||| ||||||||||||
Sbjct 2058 CAGTATATACATCGGCTTGGTAGAACCGGGAGAGAAGGCAAAGGAGGTGAAGGATTGCTT 2117
Query 2068 TTGATTGCGCCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCACTTGAACCA 2127
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2118 TTGATTGCGCCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCTCTTGAGCCA 2177
Query 2128 ATTCCAGCTCCGGATCTTGATTCAATAGTTAAACATCAGGTTGATCAGTCGATGGCTAAG 2187
||||||| ||| ||||||||||||| |||||||| |||| |||||||||| |||||||||
Sbjct 2178 ATTCCAGTTCCAGATCTTGATTCAAGAGTTAAACTTCAGATTGATCAGTCTATGGCTAAG 2237
Query 2188 ATTGATACAAGTATCAAAGAAGCAGCGTACCATGCATGGCTCGGTTATTACAACTCGGTT 2247
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2238 ATTGATACAAGTATTAAAGAAGCAGCGTACCATGCTTGGCTCGGTTATTACAACTCGGTT 2297
Query 2248 CGAGAAACCGGTAGAGACAAAACCACGTTAGCCGAGTTAGCTAATCGGTTTTGCCATTCT 2307
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2298 AGAGAAACCGGTAGAGACAAAACCACGTTGGCCGAGTTAGCTAACCGGTTTTGCCATTCT 2357
Query 2308 ATCGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAA 2367
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2358 ATCGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACGGCGGTTAAGATGGGTCTCAAA 2417
Query 2368 GGTATTTCTGGTATTCCAATCCGAAAATAAACCGACCTGTGTTGGT 2413
||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2418 GGTATTTCTGGTATTCCAATCCGAAAATAAACCGACCCGGGTTGGT 2463
> Ahg315081 jgi|Araly1|315081|fgenesh1_pm.C_scaffold_2000114
Length=2382
Score = 2846 bits (1541), Expect = 0.0
Identities = 1872/2028 (92%), Gaps = 38/2028 (2%)
Strand=Plus/Plus
Query 1 ATGTACTCGTTAATTCTCCGGGAAAGATCTGGATCCATCACAGGGTCCTTATGGAACCGA 60
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| || |
Sbjct 1 ATGTACTCGTTAATTCTCCGGGAACGATCTGGATCCTTCACAGGGTCCTTATGGAGCCAA 60
Query 61 ATATCCTCTCGGAACATGGGTGGTGGTCCGAGAACCTTCCCTGGAGGACTAAACAAGTGG 120
|| | |||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 61 ATCTTCTCTCGGAACATGGGTGGTGGTCCGAGAACTTTCCCTGGAGGGCTGAACAAGTGG 120
Query 121 CAGTGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATGGAAACGTATGCACGAGAAGAAAGCTAGAGAGAAAGAGAACAAGCTCTTGGATCAA 180
Query 181 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAAACAGCTTTACGAAGCTCGAATTAGGACCGAGATCCGAGCTAAAATGTGGGGAAAT 240
Query 241 CCAGATTCTGGTGAGAAAACGGCGAAATCGAAGCAGAGTCATGGACCAATGAGCCCGAAA 300
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CCAGATTCCGGCGAGAAAACGGCGAAATCGAAGCAGAGTCACGGACCAATGAGCCCGAAA 300
Query 301 GAACATATCAAAACCTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAGGATTTTTGGAAC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAACATATCAAAACTTTGGCTGATCGGTTTATGAAAGCTGGAGCAGAGGATTTGTGGAAC 360
Query 361 GAGAACGATGGTCCGGTGAAGAAATCAGATCAAGGGTC--GA--GA-TC--A-GG-T--T 409
||||||||||| ||||||||| |||||||| | ||||| || | || | || | |
Sbjct 361 GAGAACGATGGGCCGGTGAAGGAATCAGATGATGGGTCGGGATTAACTCGTAGGGATAAT 420
Query 410 ---CGG--A--TTCG-ATT-GA----TTCTACTTCTAATTCGCCTATTGATGTGAGG-AG 455
||| | |||| ||| || |||| ||||||||||| |||||||||||||| ||
Sbjct 421 GGACGGTCAGGTTCGAATTCGATTGTTTCTTCTTCTAATTCGTCTATTGATGTGAGGAAG 480
Query 456 ATTAGTTTCTGCGACATGTGATTCTATGGGTAAAAATCGTGTTTTCGGTAGTAGTAGGAG 515
|||||| || ||||||| |||| |||||||| | ||| ||||||| | ||||||||||
Sbjct 481 -TTAGTTAGTGGGACATGTTATTCAATGGGTAATAGTCGGGTTTTCGATCGTAGTAGGAG 539
Query 516 AGGTTTTTCGAG--T-A-T-GA-GTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 569
|||||||||||| | | | || |||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGTTTTTCGAGTATGAGTAGAGGTAGATTTAAGAGAAATGAGAGTTCTTGTGATGAAGG 599
Query 570 AGATGACTTTGATGCTAAAAAGCTAGATACTTTGAGTCCTTTTTCTCCTAAATTTGCTGG 629
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 600 AGATGACTTTGATGCTAAAAAGTTAGATACTTTGAGTCCTTTTTCTCTTAAATTTGCGGG 659
Query 630 TACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGTTGGAGTTATAAGGAACAAAGGTTT 689
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TACCAAGGAGAAAGTGAAGAGCTCGAGGAGTGTTGACGGAGTTATAAGGAACAAAGGTTT 719
Query 690 GTTTGGAAGAAGGAAGTTTAGGAAGAACGATAGTTCAACTGAAGAGGATTCAGATGAAGA 749
|||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 720 GTTTGGTCGGAGGAAGTTTAGGAAGAATGATAGTTCAACTGAAGAGGATTCAGAGGAAGA 779
Query 750 AGGCGATGAGGGAAAGATGATAGGTTGGATGGATATGAGGAAAACGGGAAGCAGTGCGTC 809
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 780 AGGCGAAGAGGGAAAGATGATAGGTTGGATGGATTTGAGGAAAACAGGAAGCAGTGCGTC 839
Query 810 GTTAGGGAACCACGATATCAAGCTGACGAAAAGAGTGAATCGTAATGTCACGGATGAAGA 869
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 840 GTTAGGAAACCACGATATCAAACTGACGAAAAGAGTGAATCGTAATGTCACGGACGAAGA 899
Query 870 GCTTTATCCTCCTTTGGATATTAATACAGTTAGAGAAGATCTCAGTAAAAGAAAATCTGT 929
||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GCTATATCCTCCGTTAGATATTAATACAGTCAGAGAAGATCTCAGTAAAAGAAAATCTGT 959
Query 930 GGATAATGTAATGGAGGAGAAGCAAGAGCCTCATGACTCGATTTACAGT-GCAAAAAGAT 988
|||||||||||| ||||||| | |||||||||||||||| |||||||| | |||||||
Sbjct 960 GGATAATGTAATAAAGGAGAACCGAGAGCCTCATGACTCGTTTTACAGTAG-GAAAAGAT 1018
Query 989 TTGATGAGTCTTGTATATCTCCTTTGACGCTAAAGGCACTTTCTGCGTCTGGCATTCTTA 1048
||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| |||
Sbjct 1019 TTGATGAGTCTAGTATATCTCCTTTGACTCTCAAGGCACTTTCCGCGTCTGGCATTGTTA 1078
Query 1049 AGATGACTAGAGTACAGGATGCCACTCTCTCTGAGTGCCTAGACGGTAAAGATGCATTAG 1108
| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1079 ATATGACTAGAGTACAAGATGCCACTCTCTCTGAGTGCCTCGATGGTAAAGATGCGTTAG 1138
Query 1109 TCAAAGCCAAAACTGGGAC-GGGAAAGAGCATGGCGTTTTTGCTTCCTGCAATTGAAACA 1167
||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1139 TCAAAGCCAAAACCGGGACGGGGAAA-AGCATGGCCTTTTTGCTTCCTGCAATTGAAACA 1197
Query 1168 GTTCTGAAAGCTATGAACAGCGGTAAGGGCGTTAACAAAGTTGCTCCGATTTTTGCTCTT 1227
||||||||||||||||||| |||||| | ||| |||||||| |||| || |||||||||
Sbjct 1198 GTTCTGAAAGCTATGAACAACGGTAACAGTGTTCACAAAGTTCCTCCAATATTTGCTCTT 1257
Query 1228 ATCCTCTGTCCCACAAGAGAACTTGCAAGCCAGATCGCTGCAGAGGGCAAGGCTCTACTC 1287
|||||||||||||||||||||||||| || ||||| |||||||||||| |||||| |||
Sbjct 1258 ATCCTCTGTCCCACAAGAGAACTTGCGAGTCAGATTTCTGCAGAGGGCATGGCTCTGCTC 1317
Query 1288 AAATTCCATGACGGGATTGGTGTTCAGACTCTAATTGGTGGTACACGCTTCAAACTTGAT 1347
|||| ||| ||||| || |||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1318 AAATACCACGACGGTATCGGTGTTCAGACTTTAATTGGAGGTACCCGCTTCAAACTTGAT 1377
Query 1348 CAACAACGCCTAGAATCTGAGCCATGTCAGATACTAATAGCAACTCCGGGAAGACTCTTG 1407
|| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1378 CAGCAACGCCTAGAATCCGAGCCATGCCAGATACTAATTGCAACTCCAGGAAGACTCTTG 1437
Query 1408 GATCATATAGAGAATAAGTCTGGCTTAACATCGCGTTTGATGGCGCTTAAATTGTTTATA 1467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 GATCATATAGAGAATAAGTCTGGCTTAACATCACGTTTGATGGCGCTTAAATTGTTTATA 1497
Query 1468 GTTGACGAGGCTGACCTTTTGCTAGACTTAGGATTCAGGAGAGATGTCGAAAAAATCATA 1527
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GTTGATGAGGCTGATCTTTTACTAGACTTAGGATTCAGGAGAGATGTCGAAAAAATCATA 1557
Query 1528 GATTGTTTGCCTCGTCAGAGACAATCTCTTCTCTTTTCTGCAACCATTCCGAAAGAGGTC 1587
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1558 GATTGTTTGCCTCGTCAAAGACAATCTCTTCTCTTTTCTGCAACCATCCCAAAAGAGGTC 1617
Query 1588 CGTCGAGTCTCACAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGGCTC 1647
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1618 CGTCGAGTCTCGCAGCTTGTTTTGAAAAGGGATCACTCTTATATCGACACAATCGGTCTT 1677
Query 1648 GGTTGTGTAGAGACTCATGATAAGGTGAGGCAATCTTGTATTGTTGCTCCACACGAATCT 1707
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1678 GGTTGTGTAGAGACTCATGATAAGGTGAAGCAATCTTGTATTGTTGCTCCTCACGATTCT 1737
Query 1708 CATTTCCACTTAGTACCTCATCTTCTAAAAGAGCACATCAACAACACGCCTGATTATAAG 1767
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 1738 CATTTCCACTTAGTACCTCATCTACTAAAAGAGCACATCAGCAACACGCTTGATTATAAG 1797
Query 1768 ATAATAGTCTTTTGCTCAACCGGTATGGTAACATCACTGATGTATACTCTACTCCGGGAA 1827
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1798 ATAATAGTCTTCTGCTCAACTGGTATGGTAACATCACTGATGTATACTCTGCTCCGGGAA 1857
Query 1828 ATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTCAGCTCCATAGAACACGTGTA 1887
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1858 ATGAAATTGAACGTTAGGGAGATTCATGCTAGAAAACCTCAGCTTCATAGAACACGTGTA 1917
Query 1888 TCAGACGAGTTTAAGGAATC-AAATAGACTGATTCTTGTCACATCTGATGTATCTGCTCG 1946
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1918 TCAGACGAGTTTAAGGAATCGAAA-AGACTGATTCTTGTCACATCTGATGTATCTGCTCG 1976
Query 1947 TGGAATGAACTATCCAGATGTTACTTTGGTTATTCAGGTCGGTATACC 1994
||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1977 TGGAATGAACTATCCAGATGTTACTTTGGTTATACAGGTGGGTATACC 2024
Score = 527 bits (285), Expect = 2e-148
Identities = 314/328 (96%), Gaps = 1/328 (0%)
Strand=Plus/Plus
Query 2070 GATTGCGCCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCACTTGAACCAAT 2129
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2056 GATTGC-CCATGGGAGAGATATTTTCTTGATGAGCTTAAAGATTTGCCTCTTGAACCAAT 2114
Query 2130 TCCAGCTCCGGATCTTGATTCAATAGTTAAACATCAGGTTGATCAGTCGATGGCTAAGAT 2189
||||| ||| ||||||||||||| |||||| | ||||||||||||||| |||||||||||
Sbjct 2115 TCCAGTTCCAGATCTTGATTCAAGAGTTAATCTTCAGGTTGATCAGTCAATGGCTAAGAT 2174
Query 2190 TGATACAAGTATCAAAGAAGCAGCGTACCATGCATGGCTCGGTTATTACAACTCGGTTCG 2249
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2175 TGATACAAGTATTAAAGAAGCAGCGTACCATGCTTGGCTCGGTTATTACAACTCGGTTCG 2234
Query 2250 AGAAACCGGTAGAGACAAAACCACGTTAGCCGAGTTAGCTAATCGGTTTTGCCATTCTAT 2309
|||||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2235 AGAAACAGGTAGAGACAAAACCACGTTGGCCGAGTTAGCCAACCGGTTTTGCCATTCTAT 2294
Query 2310 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAAGG 2369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CGGTTTAGAGAAACCTCCTGCTTTGTTTCGAAGAACCGCGGTTAAGATGGGTCTCAAAGG 2354
Query 2370 TATTTCTGGTATTCCAATCCGAAAATAA 2397
||||||||||||||||||||||||||||
Sbjct 2355 TATTTCTGGTATTCCAATCCGAAAATAA 2382
> Ahg487703 jgi|Araly1|487703|fgenesh2_kg.6__837__AT5G08610.1
Length=2540
Score = 65.8 bits (35), Expect = 2e-09
Identities = 154/208 (74%), Gaps = 22/208 (11%)
Strand=Plus/Plus
Query 1921 CTTGTCACATCTGATGTATCTGCTCGTGGAAT-GAACTATCCAGATGT-TACTTTGGTTA 1978
||||||||||||||||||||||||||||| | || || || ||||| | | || ||
Sbjct 1959 CTTGTCACATCTGATGTATCTGCTCGTGGTGTCGAT-TACCCTGATGTGT-CATTAGTCG 2016
Query 1979 TTCAGGTCGGTATA-CCGAGT--GACAGAGAACAGTATATACATCGACTAGGTAGAACTG 2035
| ||| | || || || | | ||||| || |||||||||||| |||| || ||||| |
Sbjct 2017 TACAGATGGG-ATTGCC-A-TCAGACAGGGAGCAGTATATACATAGACTTGGCAGAACGG 2073
Query 2036 GAAGAGAA-GGAAAAGGA-GGAGAAGGATTGCTT-TTGATTG-CGCCATGGGA-GAGATA 2090
| | ||| || || ||| || |||||| | || ||| ||| | |||||||| ||| ||
Sbjct 2074 GGCG-GAAAGGTAA-GGAAGGGGAAGGAGTA-TTATTG-TTGGCACCATGGGAAGAG-TA 2128
Query 2091 TTTTCT-TGATGAGCTTAAAGATTTGCC 2117
||| | | || | ||||||| |||||
Sbjct 2129 CTTTATGTCATCTG-TTAAAGACTTGCC 2155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98501373570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5