BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63270.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924635 jgi|Araly1|924635|scaffold_200196.1 1182 0.0
Ahg924622 jgi|Araly1|924622|scaffold_200183.1 1171 0.0
Ahg924629 jgi|Araly1|924629|scaffold_200190.1 1166 0.0
> Ahg924635 jgi|Araly1|924635|scaffold_200196.1
Length=731
Score = 1182 bits (640), Expect = 0.0
Identities = 687/710 (97%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61
Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121
Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181
Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241
Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527
|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300
Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360
Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 361 ATAAAATCGGCAAAGCTCAACCCGCATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420
Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 480
Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767
||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 481 CTATCGACAGACCGATTTGGCTATTGGATGAACCATCCGTTGCTTTGGATGATGAAGGAG 540
Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600
Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887
| ||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CAACTCATCTTCCTATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660
Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710
> Ahg924622 jgi|Araly1|924622|scaffold_200183.1
Length=731
Score = 1171 bits (634), Expect = 0.0
Identities = 685/710 (96%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61
Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121
Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181
Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241
Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527
|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300
Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360
Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647
||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 361 ATAAAATCGGCAAAGCTCAACCCACATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420
Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGGTTGCAACTTGCAAGGCTCCTCG 480
Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 481 CTATCGACAGACCGATATGGCTATTGGATGAACCATCTGTTGCTTTGGATGATGAAGGAG 540
Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600
Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887
| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CAACTCATCTTCCGATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660
Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710
> Ahg924629 jgi|Araly1|924629|scaffold_200190.1
Length=731
Score = 1166 bits (631), Expect = 0.0
Identities = 684/710 (96%), Gaps = 2/710 (0%)
Strand=Plus/Plus
Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61
Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121
Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181
Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241
Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527
|||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300
Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360
Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647
||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 361 ATAAAATCGGCAAAGCTCAACCCACATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420
Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGGTTGCAACTTGCAAGGCTCCTCG 480
Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 481 CTATCGACAGACCGATATGGCTATTGGATGAACCATCTGTTGCTTTGGATGATGAAGGAG 540
Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600
Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887
| ||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CAACTCATCTTCCTATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660
Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5