BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63270.1 Length=937 Score E Sequences producing significant alignments: (Bits) Value Ahg924635 jgi|Araly1|924635|scaffold_200196.1 1182 0.0 Ahg924622 jgi|Araly1|924622|scaffold_200183.1 1171 0.0 Ahg924629 jgi|Araly1|924629|scaffold_200190.1 1166 0.0 > Ahg924635 jgi|Araly1|924635|scaffold_200196.1 Length=731 Score = 1182 bits (640), Expect = 0.0 Identities = 687/710 (97%), Gaps = 2/710 (0%) Strand=Plus/Plus Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61 Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121 Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408 ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181 Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241 Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527 |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300 Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360 Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 361 ATAAAATCGGCAAAGCTCAACCCGCATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420 Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 480 Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct 481 CTATCGACAGACCGATTTGGCTATTGGATGAACCATCCGTTGCTTTGGATGATGAAGGAG 540 Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600 Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887 | ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct 601 CAACTCATCTTCCTATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660 Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710 > Ahg924622 jgi|Araly1|924622|scaffold_200183.1 Length=731 Score = 1171 bits (634), Expect = 0.0 Identities = 685/710 (96%), Gaps = 2/710 (0%) Strand=Plus/Plus Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61 Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121 Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408 ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181 Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241 Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527 |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300 Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360 Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647 ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| Sbjct 361 ATAAAATCGGCAAAGCTCAACCCACATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420 Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707 |||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||| Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGGTTGCAACTTGCAAGGCTCCTCG 480 Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767 ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 481 CTATCGACAGACCGATATGGCTATTGGATGAACCATCTGTTGCTTTGGATGATGAAGGAG 540 Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600 Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887 | |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct 601 CAACTCATCTTCCGATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660 Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710 > Ahg924629 jgi|Araly1|924629|scaffold_200190.1 Length=731 Score = 1166 bits (631), Expect = 0.0 Identities = 684/710 (96%), Gaps = 2/710 (0%) Strand=Plus/Plus Query 229 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCA 288 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2 GCGGAAGTCTTGTCCCAAAATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTCCA 61 Query 289 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 AAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCA 121 Query 349 TGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAG 408 ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 122 TGACGGTGGTGCACTTGTCTTAACTGGAACAAATGGATCCGGTAAATCGACATTCTTGAG 181 Query 409 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACAT 468 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 182 AATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAACGGTCACGACAT 241 Query 469 CACACAGTCAGGAATCTTTC-AACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 527 |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 242 CACACAATCAGGAAT-TTTCCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAG 300 Query 528 ACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGA 587 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 301 ACGCCATCAAAGAGAGATTCACAGTACTCGACAATGTCCAATGGTTTGAGCTTCTCGAGA 360 Query 588 ATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAG 647 ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| Sbjct 361 ATAAAATCGGCAAAGCTCAACCCACATTGGAGCTAATGGGTTTAGGGAGACTGGTGAAAG 420 Query 648 AGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCG 707 |||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||| Sbjct 421 AGAAATCGAGAATGTTGTCCATGGGTCAGAGGAAAAGGTTGCAACTTGCAAGGCTCCTCG 480 Query 708 CTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTG 767 ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 481 CTATCGACAGACCGATATGGCTATTGGATGAACCATCTGTTGCTTTGGATGATGAAGGAG 540 Query 768 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCG 827 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 541 TTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTAATTGTCG 600 Query 828 CGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTC 887 | ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct 601 CAACTCATCTTCCTATCGAGATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGATTTC 660 Query 888 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 937 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG 710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34768100304 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5