BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63280.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1          468    1e-131


> Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1
Length=329

 Score =  468 bits (253),  Expect = 1e-131
 Identities = 304/327 (93%), Gaps = 10/327 (3%)
 Strand=Plus/Plus

Query  23   AGGCTGTACAAGTGCGTCAAGAGCTGAATAAGTGGGCTTCCGATCACACCAATGGTCTCA  82
            |||||| |||||||||||  ||||||||||| ||||||||||||||||||||||||||||
Sbjct  5    AGGCTGAACAAGTGCGTCGTGAGCTGAATAAATGGGCTTCCGATCACACCAATGGTCTCA  64

Query  83   TCATAGACCTTCTTCCTCGTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG  142
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  65   TCAGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG  124

Query  143  CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTCAACCAAAGA-CAAC  201
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct  125  CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTTAACCAAA-ATCAAC  183

Query  202  GAGTTTCACC-A----A-GGCAAAGAAGTACATGTGCCTTTCATGAGAAGCTATGAAAGT  255
             ||||||| | |    | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct  184  AAGTTTCATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATGAGAAGCTATAAAAGT  243

Query  256  CAATATAT-AATGGCTTGCGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCT  314
            |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  244  CAATATATCAA-GGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCA  302

Query  315  TGATGATACCAAACGAAAATTCTCAAT  341
            |||||||||||||||||||||||||||
Sbjct  303  TGATGATACCAAACGAAAATTCTCAAT  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5