BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63280.1 Length=363 Score E Sequences producing significant alignments: (Bits) Value Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1 468 1e-131 > Ahg475018 jgi|Araly1|475018|fgenesh2_kg.2__148__AT1G63280.1 Length=329 Score = 468 bits (253), Expect = 1e-131 Identities = 304/327 (93%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 23 AGGCTGTACAAGTGCGTCAAGAGCTGAATAAGTGGGCTTCCGATCACACCAATGGTCTCA 82 |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 5 AGGCTGAACAAGTGCGTCGTGAGCTGAATAAATGGGCTTCCGATCACACCAATGGTCTCA 64 Query 83 TCATAGACCTTCTTCCTCGTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG 142 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 65 TCAGAGACCTTCTTCCTCCTGGATCCGTTAAAAGCGAAACCGTTCAGGTTTATGGAAACG 124 Query 143 CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTCAACCAAAGA-CAAC 201 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| Sbjct 125 CATTGTACTTCAAAGGAGCATGGGAAAACAAATTTGACAAGTCTTTAACCAAA-ATCAAC 183 Query 202 GAGTTTCACC-A----A-GGCAAAGAAGTACATGTGCCTTTCATGAGAAGCTATGAAAGT 255 ||||||| | | | |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 184 AAGTTTCATCTACTCGATGGCAAACAAGTACATGTGCCTTTCATGAGAAGCTATAAAAGT 243 Query 256 CAATATAT-AATGGCTTGCGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCT 314 |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 244 CAATATATCAA-GGCTTACGATGGTTTCAAGGTCCTTGGACTACCATACCAACAAGGCCA 302 Query 315 TGATGATACCAAACGAAAATTCTCAAT 341 ||||||||||||||||||||||||||| Sbjct 303 TGATGATACCAAACGAAAATTCTCAAT 329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12934744671 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5