BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63290.1
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1 1118 0.0
Ahg924628 jgi|Araly1|924628|scaffold_200189.1 1098 0.0
Ahg924633 jgi|Araly1|924633|scaffold_200194.1 324 9e-88
Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161 287 1e-76
Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27 226 3e-58
Ahg924627 jgi|Araly1|924627|scaffold_200188.1 217 2e-55
> Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1
Length=900
Score = 1118 bits (605), Expect = 0.0
Identities = 728/786 (93%), Gaps = 14/786 (2%)
Strand=Plus/Plus
Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91
||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 60
Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCGGACTTTGCAAATCTTGCGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 120
Query 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 121 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 180
Query 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 240
Query 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCCATGGATTACGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 300
Query 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390
||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 301 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 359
Query 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 419
Query 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 479
Query 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 ATTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTACCCAACACTTGA 539
Query 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 540 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 599
Query 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689
|||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 600 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 658
Query 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGTTGGTGCCCTA 749
|||||||| |||| |||||| |||| || || || ||||||||||| ||| || | |
Sbjct 659 CCCTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCATCCACTTAAGGGAGTGGGAGTGGGA 718
Query 750 A--CTCTATGAGCCAAGGTCT-TAAGCTAATACTTTTTTAT--TTCTTTGAAATGGAATA 804
| | | | ||| || || |||| | ||||||||||| |||||||||||||||||
Sbjct 719 ATGCCCCA--AGC-AATAACTGTAAG--AGTACTTTTTTATAATTCTTTGAAATGGAATA 773
Query 805 AACCTT 810
|| |||
Sbjct 774 AATCTT 779
Score = 100 bits (54), Expect = 2e-20
Identities = 110/134 (82%), Gaps = 15/134 (11%)
Strand=Plus/Plus
Query 839 AATGTGTCTGAGAGCTTTTGCCCTAGCGATGAAATTCCACAAGAAAATCACCGGAGATAG 898
||| ||||| ||||||||||||||||||||||| || | |||||||||||||| ||||
Sbjct 781 AATCTGTCTCAGAGCTTTTGCCCTAGCGATGAACTTTCTCAAGAAAATCACCGCAGAT-- 838
Query 899 AATTTTTTGTTAAGAAATTGTTTATTATGTAGCAGTTACATTTTAGTCTATCAGACTTAA 958
| | | || || || | ||||||||||||||||||| |||||||||||||||
Sbjct 839 -A------G---A-AACTT-TTGA-TATGTAGCAGTTACATTTTTGTCTATCAGACTTAA 885
Query 959 TTAGATAATCCAGA 972
||||||||||||||
Sbjct 886 TTAGATAATCCAGA 899
> Ahg924628 jgi|Araly1|924628|scaffold_200189.1
Length=727
Score = 1098 bits (594), Expect = 0.0
Identities = 672/710 (95%), Gaps = 4/710 (1%)
Strand=Plus/Plus
Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91
||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 64
Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 65 TCGGACTTTGCAAATCTTGCTGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 124
Query 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 125 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 184
Query 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 185 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTTACGAAC 244
Query 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 245 CCCATGGATTACGTGGATCAAATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 304
Query 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390
||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 305 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 363
Query 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 423
Query 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 424 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGTGGCCAGAA 483
Query 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 484 GTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTATCCAACACTTGA 543
Query 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 544 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 603
Query 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689
|||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 604 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 662
Query 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGT 739
|| ||||| |||| |||||| |||| || || |||||||||||||| |||
Sbjct 663 CCTTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCCTCCACTTAAGGGAGT 712
> Ahg924633 jgi|Araly1|924633|scaffold_200194.1
Length=432
Score = 324 bits (175), Expect = 9e-88
Identities = 196/206 (95%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 240 CATATCTTGATTGCCACTTAATGGTGACGAACCCCATGGATTATGTGGATCAGATGGCTA 299
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1 CATATCTTGATTGCCACTTAATGGTTACGAACCCCATGGATTACGTGGATCAAATGGCTA 60
Query 300 AAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGGCAAGAAC 359
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGGCAAGAAC 120
Query 360 TTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA 418
|||| ||| || |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA 179
Query 419 CCTGTTGAACAAGTCTATCCTCTGGT 444
||||||||||||||||||||||||||
Sbjct 180 CCTGTTGAACAAGTCTATCCTCTGGT 205
Score = 272 bits (147), Expect = 3e-72
Identities = 163/171 (95%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 489 AGCCTGGATTTGGAGGCCAGAAGTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGA 548
||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 211 AGCCTAGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGA 270
Query 549 GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCG 608
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 271 GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTGCACAATCG 330
Query 609 ATGCAGCAGCTGCAGCTGGAGCCAACTGTATCGTCGCAGGAAGTTCAGTGT 659
||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 331 ATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCGGTGT 381
> Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161
Length=189
Score = 287 bits (155), Expect = 1e-76
Identities = 179/190 (94%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 293 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGG 352
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGG 60
Query 353 CAAGAACTTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 411
||||||||||| ||| || |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 CAAGAACTTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 119
Query 412 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTC--GAAGGTACAAATCCGGTCGAAATG 469
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 120 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTATTGAAGGTACAAATCCGGTTGAAATG 179
Query 470 GTTCTTGTGA 479
||||||||||
Sbjct 180 GTTCTTGTGA 189
> Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27
Length=636
Score = 226 bits (122), Expect = 3e-58
Identities = 159/177 (90%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 169 GGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 228
||||||||||||||| | || ||||| |||||| |||||||||||||||||||| | ||
Sbjct 207 GGACGGGCATTTTGTCCCGAATCTAACCATTGGTCCTCCTGTCATCGAGAGTTTGCGAAA 266
Query 229 GCACACAAATGCATATCTTGATTGCCAC-TTAATGGTGACGAACCCCATGGATTATGTGG 287
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||
Sbjct 267 GCACACAAATGCATATCTTGATTGCCACCTTA-TGGTGACGAACCCCATCGATTACGTGG 325
Query 288 ATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAG 344
| || |||||||||||||| || |||||||||||||||||||| ||||||||| |||
Sbjct 326 AACACATGGCTAAAGCTGGTGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCAAAG 382
> Ahg924627 jgi|Araly1|924627|scaffold_200188.1
Length=270
Score = 217 bits (117), Expect = 2e-55
Identities = 131/138 (95%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91
||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 64
Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 65 TCGGACTTTGCAAATCTTGAGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 124
Query 152 CTTCACATGGACATTATG 169
||||||||||||||||||
Sbjct 125 CTTCACATGGACATTATG 142
Score = 86.1 bits (46), Expect = 4e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 174 GGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 228
||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 177 GGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369262818
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5