BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G63290.1 Length=979 Score E Sequences producing significant alignments: (Bits) Value Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1 1118 0.0 Ahg924628 jgi|Araly1|924628|scaffold_200189.1 1098 0.0 Ahg924633 jgi|Araly1|924633|scaffold_200194.1 324 9e-88 Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161 287 1e-76 Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27 226 3e-58 Ahg924627 jgi|Araly1|924627|scaffold_200188.1 217 2e-55 > Ahg475014 jgi|Araly1|475014|fgenesh2_kg.2__144__AT1G63290.1 Length=900 Score = 1118 bits (605), Expect = 0.0 Identities = 728/786 (93%), Gaps = 14/786 (2%) Strand=Plus/Plus Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91 ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 60 Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCGGACTTTGCAAATCTTGCGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 120 Query 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211 ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 121 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 180 Query 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 240 Query 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCCATGGATTACGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 300 Query 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390 ||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct 301 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 359 Query 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 419 Query 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 479 Query 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570 |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 480 ATTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTACCCAACACTTGA 539 Query 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630 ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| || Sbjct 540 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 599 Query 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689 |||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||| Sbjct 600 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 658 Query 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGTTGGTGCCCTA 749 |||||||| |||| |||||| |||| || || || ||||||||||| ||| || | | Sbjct 659 CCCTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCATCCACTTAAGGGAGTGGGAGTGGGA 718 Query 750 A--CTCTATGAGCCAAGGTCT-TAAGCTAATACTTTTTTAT--TTCTTTGAAATGGAATA 804 | | | | ||| || || |||| | ||||||||||| ||||||||||||||||| Sbjct 719 ATGCCCCA--AGC-AATAACTGTAAG--AGTACTTTTTTATAATTCTTTGAAATGGAATA 773 Query 805 AACCTT 810 || ||| Sbjct 774 AATCTT 779 Score = 100 bits (54), Expect = 2e-20 Identities = 110/134 (82%), Gaps = 15/134 (11%) Strand=Plus/Plus Query 839 AATGTGTCTGAGAGCTTTTGCCCTAGCGATGAAATTCCACAAGAAAATCACCGGAGATAG 898 ||| ||||| ||||||||||||||||||||||| || | |||||||||||||| |||| Sbjct 781 AATCTGTCTCAGAGCTTTTGCCCTAGCGATGAACTTTCTCAAGAAAATCACCGCAGAT-- 838 Query 899 AATTTTTTGTTAAGAAATTGTTTATTATGTAGCAGTTACATTTTAGTCTATCAGACTTAA 958 | | | || || || | ||||||||||||||||||| ||||||||||||||| Sbjct 839 -A------G---A-AACTT-TTGA-TATGTAGCAGTTACATTTTTGTCTATCAGACTTAA 885 Query 959 TTAGATAATCCAGA 972 |||||||||||||| Sbjct 886 TTAGATAATCCAGA 899 > Ahg924628 jgi|Araly1|924628|scaffold_200189.1 Length=727 Score = 1098 bits (594), Expect = 0.0 Identities = 672/710 (95%), Gaps = 4/710 (1%) Strand=Plus/Plus Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91 ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 5 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 64 Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 65 TCGGACTTTGCAAATCTTGCTGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 124 Query 152 CTTCACATGGACATTATGGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTC 211 ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 125 CTTCACATGGACATTATGGACGGGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTC 184 Query 212 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTGACGAAC 271 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 185 ATCGAGAGTTTGAGGAAGCACACAAATGCATATCTTGATTGCCACTTAATGGTTACGAAC 244 Query 272 CCCATGGATTATGTGGATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 331 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 245 CCCATGGATTACGTGGATCAAATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTT 304 Query 332 GAGGTGGCCCAAGAGAATTGGCAAGAACTTGTG-AAGAAGATTAAGGCTGCTGGGATGAG 390 ||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct 305 GAGGTGGCCAAAGAGAATTGGCAAGAACTTGTGGAA-AAGATTAAGTCTGCTGGGATGAG 363 Query 391 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTCGAAGG 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 364 GCCAGGTGTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCTATCCTCTGGTTGAAGG 423 Query 451 TACAAATCCGGTCGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGAGGCCAGAA 510 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 424 TACAAATCCGGTTGAAATGGTTCTTGTGATGACTGTGGAGCCTGGATTTGGTGGCCAGAA 483 Query 511 GTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGAGGAACAAGTACCCAACACTTGA 570 ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 484 GTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGAGGAACAAGTATCCAACACTTGA 543 Query 571 TATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCGATGCAGCAGCTGCAGCTGGAGC 630 ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| || Sbjct 544 TATTGAGGTGGACGGTGGCTTAGGTCCTTCCACAATCGATGCAGCGGCTGCAGCTGGGGC 603 Query 631 CAACTGTATCGTCGCAGGAAGTTCAGTGTTTGGAGCTCC-GAAGCCTGGGGACGTCATAT 689 |||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||| Sbjct 604 CAACTGTATCGTCGCAGGAAGTTCGGTGTTTGGAGCTCCTGA-GCCTGGGGATGTCATAT 662 Query 690 CCCTTTTGCGGGCTAGTGTTGAGAAAGCACAACCCTCCACTTAAGGAAGT 739 || ||||| |||| |||||| |||| || || |||||||||||||| ||| Sbjct 663 CCTTTTTGTGGGCCAGTGTTAAGAAGGCGCAGCCCTCCACTTAAGGGAGT 712 > Ahg924633 jgi|Araly1|924633|scaffold_200194.1 Length=432 Score = 324 bits (175), Expect = 9e-88 Identities = 196/206 (95%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 240 CATATCTTGATTGCCACTTAATGGTGACGAACCCCATGGATTATGTGGATCAGATGGCTA 299 ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 1 CATATCTTGATTGCCACTTAATGGTTACGAACCCCATGGATTACGTGGATCAAATGGCTA 60 Query 300 AAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGGCAAGAAC 359 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 61 AAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGGCAAGAAC 120 Query 360 TTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA 418 |||| ||| || |||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCTGGAACA 179 Query 419 CCTGTTGAACAAGTCTATCCTCTGGT 444 |||||||||||||||||||||||||| Sbjct 180 CCTGTTGAACAAGTCTATCCTCTGGT 205 Score = 272 bits (147), Expect = 3e-72 Identities = 163/171 (95%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 489 AGCCTGGATTTGGAGGCCAGAAGTTCATGCCCAGCATGATGGACAAGGTCAGGGCATTGA 548 ||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 211 AGCCTAGATTTGGTGGCCAGAAGTTCATGCCCAACATGATGGACAAGGTCCGGGCATTGA 270 Query 549 GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTCCACAATCG 608 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 271 GGAACAAGTACCCAACACTTGATATTGAGGTGGACGGCGGCTTAGGCCCTTGCACAATCG 330 Query 609 ATGCAGCAGCTGCAGCTGGAGCCAACTGTATCGTCGCAGGAAGTTCAGTGT 659 ||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 331 ATGCAGCGGCTGCAGCTGGGGCCAACTGTATCGTCGCAGGAAGTTCGGTGT 381 > Ahg907080 jgi|Araly1|907080|Al_scaffold_0002_161 Length=189 Score = 287 bits (155), Expect = 1e-76 Identities = 179/190 (94%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 293 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGG 352 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGG 60 Query 353 CAAGAACTTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 411 ||||||||||| ||| || |||||| ||| |||||||||||||||||||||||||||||| Sbjct 61 CAAGAACTTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 119 Query 412 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTC--GAAGGTACAAATCCGGTCGAAATG 469 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 120 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTATTGAAGGTACAAATCCGGTTGAAATG 179 Query 470 GTTCTTGTGA 479 |||||||||| Sbjct 180 GTTCTTGTGA 189 > Ahg902899 jgi|Araly1|902899|Al_scaffold_0003_27 Length=636 Score = 226 bits (122), Expect = 3e-58 Identities = 159/177 (90%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 169 GGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 228 ||||||||||||||| | || ||||| |||||| |||||||||||||||||||| | || Sbjct 207 GGACGGGCATTTTGTCCCGAATCTAACCATTGGTCCTCCTGTCATCGAGAGTTTGCGAAA 266 Query 229 GCACACAAATGCATATCTTGATTGCCAC-TTAATGGTGACGAACCCCATGGATTATGTGG 287 |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||| Sbjct 267 GCACACAAATGCATATCTTGATTGCCACCTTA-TGGTGACGAACCCCATCGATTACGTGG 325 Query 288 ATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAG 344 | || |||||||||||||| || |||||||||||||||||||| ||||||||| ||| Sbjct 326 AACACATGGCTAAAGCTGGTGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCAAAG 382 > Ahg924627 jgi|Araly1|924627|scaffold_200188.1 Length=270 Score = 217 bits (117), Expect = 2e-55 Identities = 131/138 (95%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 32 TCGTTGAAACCAGAGAAGATGGTGGGTGTGTCGCCGAAGATCGCTCCGTCGATGTTGTCA 91 ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 5 TCGTTGAAATCAGGGAAGATGGTGGGAGTGTCACCGAAGATCGCTCCGTCGATGTTGTCA 64 Query 92 TCGGACTTTGCAAATCTTGCCGCGGAGGCTAAGCGGATGATCGATTTGGGCGCCAATTGG 151 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 65 TCGGACTTTGCAAATCTTGAGGCGGAGGCTAAGCGGATGATCGATTTAGGCGCCAATTGG 124 Query 152 CTTCACATGGACATTATG 169 |||||||||||||||||| Sbjct 125 CTTCACATGGACATTATG 142 Score = 86.1 bits (46), Expect = 4e-16 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 174 GGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 228 ||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 177 GGCATTTTGTTCCGAATCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369262818 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5