BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G63295.1

Length=748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130           715    0.0  


> Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130
Length=450

 Score =  715 bits (387),  Expect = 0.0
 Identities = 429/450 (95%), Gaps = 0/450 (0%)
 Strand=Plus/Plus

Query  239  ATGGGACAAAATAAACCAGTCCAGAAAAAGTCTCCATTATATGAAGAAAGTACTATCATT  298
            |||||||||||||||| |||||||||| | ||||| ||||||||| ||||||||||||||
Sbjct  1    ATGGGACAAAATAAACAAGTCCAGAAAGATTCTCCGTTATATGAACAAAGTACTATCATT  60

Query  299  TTTGCTTCAAGTCAAAATGAAAAACTTGTTGAGATAGAGAAAGAGAAGAGACTTGCGTTA  358
            || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  61   TTGGCTTCAAGTCAAAATGAAAAACTTGTTGAGACAGAGAAAGAGAAGAGACTTGCGTTG  120

Query  359  ATAGATGCATGGGAAGAGAACGAGAAGGCAAAAGCTCAAACCAAGGCTTACAAAGAACTT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATAGATGCATGGGAAGAGAACGAGAAGGCAAAAGCTCAAACCAAGGCTTACAAAGAACTT  180

Query  419  TGCTCGATTGAATCATGGGAAAACAACATGAAGACAGCTCTAGAGTTAGATTTGAAGAAA  478
            ||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct  181  TGCTCCATTGAATCATGGGAGAATAACACGAAGACAGCTCTAGAGTTAGATTTGAAGAAA  240

Query  479  ATGGAGGAGAATTTACAAGTGGAGAAAACTGAATTCTCaaaaaaattcaagaaaaaaata  538
            |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct  241  ATGGAGGAGAGTTTAGAAGTGGAGAAAACTGAATACTCAAAAAAATTCAAGAAAAAAATA  300

Query  539  cctgaaattgagaagattgcagaagccaaaagagaaaaaatagagaaacaaaaggagcaa  598
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  GCTGAAATTGAGAAGATTGCAGAAGCTAAAAGAGAAAAAATAGAGAAACAAAAGGAGCAA  360

Query  599  gaatctatcaaagtcgaaaaaaTAAGTGAGAAGCTAATTGCAACTCCAAATGCCTATCCA  658
            |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  361  GAATCTATCAAAGTGGAAAAAATAAGTGAGAAGCTAATTGCAACTCCAAATGCATATCCA  420

Query  659  CCCAATACCAAAACTTGTGGATGTTTCTAA  688
            ||||| |||||||| |||||||||||||||
Sbjct  421  CCCAACACCAAAACCTGTGGATGTTTCTAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27562868991


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5