BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63310.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475012 jgi|Araly1|475012|fgenesh2_kg.2__142__AT1G63310.1 1212 0.0
> Ahg475012 jgi|Araly1|475012|fgenesh2_kg.2__142__AT1G63310.1
Length=765
Score = 1212 bits (656), Expect = 0.0
Identities = 735/772 (95%), Gaps = 10/772 (1%)
Strand=Plus/Plus
Query 1 GGATTGCTTTGCCTTGGCGTATCTGCTT-TGGGTGAT-AAAGAATGAAGCTAAGCGAGTC 58
|||||||||||||||||| | ||||||| | | |||| |||||||||||||||||||| |
Sbjct 1 GGATTGCTTTGCCTTGGCATCTCTGCTTCT-GTTGATAAAAGAATGAAGCTAAGCGAGAC 59
Query 59 AAGAGGCGAAACAGAGAAGCACAGGCGACAACAACATTTCGAGCACGAGCTTAAGAACAT 118
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AAGAGGCGAAACAGAGAAGCACAGGCGCCAACAACATTTCGAGCACGAGCTTAAGAACAT 119
Query 119 GATCTCTTCCTTAACCCACATGGGAGGAGATAAGGCAGGACCTAGCCAATACGATGAAGA 178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GATCTCTTCGTTAACCCACATGGGAGGAGATAAGGCAGGACCTAGCCAATACGATGAAGA 179
Query 179 GGAAGATGGTATCAGAGTCATCACACTTTCTGGATCCAACCTTGGAGCCACCATGAAGAC 238
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 GGAGGATGGTATCAGAGTCATCACGCTTTCTGGATCCAACCTTGGAGCCACCATGAAGAC 239
Query 239 CGAGCTTGACAACAATCATGGAGACAGAGACCAAAATGGCGACCACGAGCTTGATTTCCT 298
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 240 CGAGCTTGACAACAATCATGGAGACAGAGACAAAAATGGCGACCATGAGCTTGATTTCCT 299
Query 299 AAGCACTTATGTTAATAGCAACTTCCAAGCTGTGAACAACTCGATTATGATAGGGGCCAA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAGCACTTATGTTAATAGCAACTTCCAAGCTGTGAACAACTCGATTATGATAGGGGCCAA 359
Query 359 GTACGAGACTCATGATCCTGGCGTTCATCTTGACATTTCGGGCGATGTGGAGAAACCTTC 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GTACGAGACTCATGATCCTGGCGTTCATCTTGACATCTCGGGCGATGTGGAGAAACCTTC 419
Query 419 GGTGAAGATACCTGCGAGGAGTTCAAGGGGAAAGAAGGGTAAGACTCCTGCCAGAAGTGA 478
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 420 GGTGAAGATACCTGCGAGGAGTTCAAGGGGAAAGAAGGGTAAAACTCCTGCTAGGAGTGA 479
Query 479 CCGTCGAGAATCTGAACATACTAATTGAATGGTATGGTATATTCATGGATCAGTGTTAAT 538
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 480 CCGTCGAGAATCTGAACATACTAATTGAATGGTATGGTATCTTCATTGATCAGTATTAAT 539
Query 539 TCTCtttttttATTTTCTTGTCTTGCCTTCTCTAAATAATCAGAGAAGTGGTGCATGCCA 598
|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TCTCTTTT---ATTCTCTTGTCTTGCCTACTCTAAATAATCAGAGAAGTGGTGCATGCCA 596
Query 599 AAGCACTTTACTTTCTCTTCGAGGTTGTTGTTTTCGCTTGCGCTTCTTATTATCAAACAT 658
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 597 AAGCACTTTACTTTCTCTTCGAGGTTGTTGTTTTCGCTTGCGCTTATTATTA--AA-CAT 653
Query 659 GTT-CTATATATAGTCTATTCTCAATATAAATAAATGTATGAAGCATGGTGTGGTCGATC 717
||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 654 GTTTCTATTTACAGTCTATTCTCAATATAAATAAATGTATGAAGCAGGGTGTGGTCAATC 713
Query 718 CTCTTTGATATGATTATTTGGTTGATGAGGGAATGTAGAGGCCATACCTTGT 769
||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 CTCTTAGATATGATTACTTGGTTGATGAGGGAATGTAGAGGCCATACCTTGT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5