BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63320.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475042 jgi|Araly1|475042|fgenesh2_kg.2__172__AT1G63320.1 806 0.0
Ahg475062 jgi|Araly1|475062|fgenesh2_kg.2__192__AT1G63320.1 795 0.0
> Ahg475042 jgi|Araly1|475042|fgenesh2_kg.2__172__AT1G63320.1
Length=568
Score = 806 bits (436), Expect = 0.0
Identities = 528/572 (92%), Gaps = 8/572 (1%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTCCGCG-AGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACAC 59
||||||||||| || | | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAACTCTTTCG-GAACATGTCTCAAAGAGGATTGGTTGGAAACACAGTCACTTACAA 59
Query 60 CACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAA 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 CACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAA 119
Query 120 AGAGATGGTATCTGATGGCGTGCCTCCCGATATCATGACATACAACATTCTGTTAGATGG 179
|| |||||| |||||||| ||||||| ||||| |||||||||||| |||||||||||||
Sbjct 120 AGTGATGGTTTCTGATGGTTTGCCTCCAGATATTATGACATACAACTTTCTGTTAGATGG 179
Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAGGGAAGGTGGAAGATGGGTG 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAAGGAAGGTGGAAGATGGGTG 239
Query 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACCTACACA-A 298
| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct 240 GAATTTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTGATGTTATAACCTACA-ATA 298
Query 299 CAATGATCTCAGGATTCTGTAAGAAAGGTTTTAAGGAGGAAGCATATACCTTATTCAGAA 358
|||||||||||||||||||| ||||||||| |||||||||||| ||||||| |||| ||
Sbjct 299 CAATGATCTCAGGATTCTGTTGGAAAGGTTTAAAGGAGGAAGCAGATACCTTGTTCAAAA 358
Query 359 AAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGAAAGAAGATGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
Query 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAAATGAGGAGTTGCA 478
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAGATGAGGAGTTGCG 478
Query 479 GATTTGCTGGAGATGCTTCAACTTAT-GGCTTGGTCAC-AGATATGTTGCATGATGGGAG 536
| |||||||||||||||||||| || |||||||| || | ||||| |||||||||||||
Sbjct 479 GGTTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTGACTA-ATATGCTGCATGATGGGAG 536
Query 537 ATTGGACAAAGGATTTTTGGAAATGCTATCTT 568
|||||||||| | ||| |||| ||||| ||||
Sbjct 537 ATTGGACAAAAGCTTTCTGGACATGCTTTCTT 568
> Ahg475062 jgi|Araly1|475062|fgenesh2_kg.2__192__AT1G63320.1
Length=568
Score = 795 bits (430), Expect = 0.0
Identities = 527/573 (92%), Gaps = 10/573 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTCTTCCGCGAGATGTCTCAAAGAGGATTGGTTGGCAACACAGTCACTTACACC 60
||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||
Sbjct 1 ATGGAACTCTTCCGCGAGATGTCACAGAGAGGATTGGTTGGCGATACAGTCACTTACACC 60
Query 61 ACTCTTATCCAAGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAAATATTCAAA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ACTCTTATCCAGGGGTTATTTCAAGCTGGAGATTGTGATATGGCTCAAGAACTATTCAAA 120
Query 121 GAGATGGTATCTGATGGCGTGCCTCCCGATATCATGACATACAACAT-TCTGTTAGATGG 179
|||||||| |||||||| ||||||||| || |||||||||||||| | ||||||||||||
Sbjct 121 GAGATGGTTTCTGATGGTGTGCCTCCCAATCTCATGACATACAAC-TCTCTGTTAGATGG 179
Query 180 ACTCTGTAAAAATGGGAAGCTAGAGAAAGCATTGGTGGCAGGGAAGGTGGAAGATGGGTG 239
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 ACTCTGTAATAATGGGAAGCTAGAGAAAGCATTGGTGGTTGGGAAGGTGGAAGATGGGTG 239
Query 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACCTACACA-A 298
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 240 GGATCTATTTTGTAGCCTCAGCCTTAAAGGAGTGAAGCCTAATGTTGTAACATACA-ATA 298
Query 299 CAATGATCTCAGGATTCTGTAAGAAAGGTTTTAAGGAGGAAGCATATACCTTATTCAGAA 358
||||||||||||| || |||| ||||||||| || ||||||| ||| | || | | ||
Sbjct 299 CAATGATCTCAGGCTTGTGTAGGAAAGGTTTAAACCAGGAAGCTTATGCGTTGCTAAAAA 358
Query 359 AAATGAAAGAAGACGGGCCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGAAAGAAGATGGACCTCTTCCAGATAGTGGTACTTATAATACGCTTATTAGGGCGC 418
Query 419 ATCTTAGAGATGGTGACAAAGCAGCATCAGCTGAACTCATCAAAGAAATGAGGAGTTGC- 477
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 419 ATCTTAGAGATGGTGACAAAGCAGCATCATCTGAACTCATCAGAGAAATGAGGAGTTGCG 478
Query 478 AGATTTGCTGGAGATGCTTCAACTTAT-GGCTTGGTCAC-AGATATGTTGCATGATGGGA 535
|| |||||||||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 479 AG-TTTGCTGGAGATGCTTCAACC-ATTGGCTTGGTCACTA-ATATGTTGCATGATGGGA 535
Query 536 GATTGGACAAAGGATTTTTGGAAATGCTATCTT 568
|||| |||||| | |||||||||||||| ||||
Sbjct 536 GATTAGACAAAAGCTTTTTGGAAATGCTTTCTT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5