BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63340.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475091 jgi|Araly1|475091|fgenesh2_kg.2__221__AT1G62580.1 1116 0.0
> Ahg475091 jgi|Araly1|475091|fgenesh2_kg.2__221__AT1G62580.1
Length=1338
Score = 1116 bits (604), Expect = 0.0
Identities = 761/835 (91%), Gaps = 17/835 (2%)
Strand=Plus/Plus
Query 1 ATGGTACCAGCAGTAAATCCTCCTACCACATCACACCACGTGGCAGTAATCGGTGCTGGA 60
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1 ATGGTACCAGCAGTGAATCCTCCTACCACATCATGCCACGTAGCAGTAATCGGTGCCGGA 60
Query 61 GCAGCCGGACTCGTGGCTGCTCGAGAGCTCCGCCG-TGAGGGCCACTCTGTCGTTGTTTT 119
||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 61 GCAGCGGGACTCGTGGCAGCCCGAGAGCTCCGCCGCTG-TGGCCATTCTGTGGTTGTCTT 119
Query 120 CGAACGTGGGAACCAAATCGGAGGCGTGTGGGCTTACACGCCTAATGTCGAACCTGACCC 179
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 120 CGAACGTGGGAACCAAATCGGAGGCGTGTGGGCTTACACGCCTAACGTCGAACCCGACCC 179
Query 180 GCTTAGCATTGACCCGACCCGACCCGTAATCCATTCGAGCCTCTATAGTTCTCTCCGAAC 239
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 GCTTAGCATCGACCCGACCCGACCCGTAATCCATTCTAGCCTCTACAGTTCTCTCCGAAC 239
Query 240 AATCATCCCACGAGAATGCATGGGTTTCACTGATTTCCCGTTTTCGACTGGACCCGAAAA 299
||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||
Sbjct 240 CATCATCCCACGAGAATGCATGGGTTTCACCGATTTCCCGTTTTCAACCCGACCCGAGAA 299
Query 300 CAAGTCTAGAGATCCGAGACGACATCCGGGTCATA-TAGAGGTTCTTGCATACCTGAAAG 358
|| |||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||
Sbjct 300 CAGGTCTAGAGATCCGAGAAGACATCCGGGTCATAGT-GAGGTTCTTGCTTACCTGAAAG 358
Query 359 ACTTTGCGAG-GAAGTTCAAGATGGACGAGATGATTCGGTTCGAGACGGAGGTTGTGAGG 417
|||||||||| || ||||||||| || ||| ||||||||||||| |||||||||||||||
Sbjct 359 ACTTTGCGAGAGA-GTTCAAGATCGAAGAGCTGATTCGGTTCGACACGGAGGTTGTGAGG 417
Query 418 GCTGAGCCGGCGGCGGAA-AATCCAAAAAAGTGGAGAGTCGAGTCTAGAAACTCCGGTGA 476
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 GCTGAGCCGGCGGCG-AAGAATCCCAAAAAGTGGAGAGTCGAGTCTAGAAACTCCGGTGA 476
Query 477 TATCTCCGACGAGATTTATGATGCCGTAGTTGTTTGTAACGGTCACTATACAGAGCCTCG 536
| ||||||||||||||||| ||| | || |||||||||||||||||||| ||||||||
Sbjct 477 CGTTTCCGACGAGATTTATGACGCCATCGTCGTTTGTAACGGTCACTATACGGAGCCTCG 536
Query 537 TCATGCTCTAATCCCTGGCATAGATTCATGTCCTGGAAAGCAAATTCACAGCCACAATTA 596
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 537 TCATGCTCTAATCCCTGGCATAGATTCATGGCCAGGAAAACAAATTCACAGCCACAATTA 596
Query 597 TAGAATTCCAGATCAATTTAAAGATCAGGTAAACA-G-TG---G-AAGCTCAGTGAGCGG 650
| || ||||||||||||||| ||||||||| | || | |||||||||||||||
Sbjct 597 TCGAGTTCCAGATCAATTTAGAGATCAGGTGGTGGTGGTGATCGGAAGCTCAGTGAGCGG 656
Query 651 AGTCGATATAAGCAGAGACATAGTAAATGTTACAAAAGAAGTCCATATATCTTCAAGATC 710
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 657 AGTCGATATAAGCAGAGACATAGCAAATGTTACAAAAGAAGTCCATGTATCTTCAAGATC 716
Query 711 AACTAAACCGGAAACATACGAAAAACTTTCCGGTTACGACAACTTATGGCTTCACTCTAA 770
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 CACTACACCGGAAACATACGAAAAACTTCCCGGTTACGACAACTTATGGCTTCACTCTAC 776
Query 771 TATTGAAACTGTCCGAGAAGATGGTTCGGTGGTATTTAAGAA-CGGAAAGACGGT 824
||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 777 TATTGAAACTGTCCGAGAAGATGGTTCGGTGGTATTTG-GAATCG-AAAGACGGT 829
Score = 324 bits (175), Expect = 1e-87
Identities = 195/205 (95%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1053 GTTTGTATACGATAATTGGCTTGCTGATCAATGTGACTATCCTCGTATCGAGAAATGGAG 1112
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1128 GTTTGTATACGATAATTGGCTTGCTGATCAATGTGACTATCCTCGGATCGAAAAATGGAG 1187
Query 1113 AGAGCAAATGTTTTACAAGGTGTTCAAGAGAATACAATCCCAATCCAGTACATATAAGGA 1172
|||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1188 AGAGCAAATGTTCTACAATGTGTTCAAGAGAATACAAGCCCAATCCAGTACATACAAGGA 1247
Query 1173 CGATTGGGACGATGATCACCTCATCGCAGAAGCATATGAAGATTTCGTCAAATTCCCATC 1232
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1248 CGATTGGGATGATGATCACCTCATCGCAGAAGCATATGAAGATTTCGTCAAATTCACATC 1307
Query 1233 TAACTATCCCAGTTCTTTAATCGAA 1257
|||| |||| |||||||||||||||
Sbjct 1308 TAACAATCCAAGTTCTTTAATCGAA 1332
Score = 148 bits (80), Expect = 7e-35
Identities = 84/86 (98%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 854 GGTACAAATATTACTTCCCATTTCTCGACACGAAAGGCGAAGTGACCGTTGAGGATAACC 913
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 827 GGTACAAATATTACTTCCCATTTCTCGACACGAAAGGCGAAGTAATCGTTGAGGATAACC 886
Query 914 GTGTTGGACCATTATATAAGCATGTT 939
||||||||||||||||||||||||||
Sbjct 887 GTGTTGGACCATTATATAAGCATGTT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5