BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G63350.1
Length=2697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218 1855 0.0
Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321 1288 0.0
> Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218
Length=3012
Score = 1855 bits (1004), Expect = 0.0
Identities = 2138/2659 (80%), Gaps = 184/2659 (7%)
Strand=Plus/Plus
Query 14 TCTCGATACCCTTT-GATCCGT-GTGTAAATAAAGTCTCTCAATGGCTAG-ACATG-AAA 69
|||| ||| ||||| |||| | | || |||||||||||||||||||||| | | | |||
Sbjct 20 TCTCAATA-CCTTTGGATCAATCG-GTGAATAAAGTCTCTCAATGGCTAGAAGA-GAAAA 76
Query 70 GTAAGTTATACTCACAACCTCGAGAAGAATCTTGTGGCTCTCGAGACAACCATGGAAGAG 129
| | ||||||||||||| ||||| |||||||| ||| | ||||||||||||||||||
Sbjct 77 G-AGGTTATACTCACAATCTCGAAAAGAATCTCACAGCTTTGGAGACAACCATGGAAGAG 135
Query 130 CTCAAGGCCAAGCGGGATGATTTATTAAGAAAGCTCAAAAGAGAGGAGGATAGAGGTCTA 189
|||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct 136 CTCAAGGCTAAGCGGGATGATTTGGAAAGAAAGCTCAGAAGAGAAGAGGATAGAGGTCTA 195
Query 190 CAAACGCTTGGCGAAATCAAGGTATGGCTTAATAGAGTTGAGACTA-TCGAAAG-CAGAG 247
|||| |||| |||| || ||||||||||||||||||||| || | | | ||| | |
Sbjct 196 CAAAGGCTTTCCGAATTCCAGGTATGGCTTAATAGAGTTGCGA-AAGT-GGAAGATAAAT 253
Query 248 TCAATGA-TCTTCTTAATGCTAGAA-ATGCTGAACTTCAAAGGCTGTGCCTTTGTGGGTT 305
|||| | ||| ||| || || || ||| |||| || ||||||||||||||||||||||
Sbjct 254 TCAA-CACCCTTGTTAGTGATA-AAGATGTTGAAATTAAAAGGCTGTGCCTTTGTGGGTT 311
Query 306 TTGCTCTAAGAGTTTAACGA-CGAGCTATCGTTATGGGAAAAGTGTTTTCTTGAAATTGA 364
||| ||||||||||| || | ||||||||||||| ||||||| ||||||||||| |||
Sbjct 312 TTGTTCTAAGAGTTT-ACTATCGAGCTATCGTTACGGGAAAAATGTTTTCTTGACGTTG- 369
Query 365 GG-GAGGTTGAGAAACTCGAAAGGAGAGTTTTTGAAGTGATT-TCTGATCAAGCTTC-AA 421
|| ||||||||||||||| |||| | || | || ||| |||| | || ||| | || ||
Sbjct 370 GGTGAGGTTGAGAAACTCAAAAGTAAAGATATTAAAGAGATTGT-TG-CCAAACCTCTAA 427
Query 422 CATCTGAGGTGGAGGAACA-ACAACTTCAACCGACAATTGTTGGTCAAGAAACAATGCTT 480
|| ||||| |||||||| | || ||||||||||| |||||||||||||||| |||||||
Sbjct 428 CACCTGAGTTGGAGGAA-AGACGACTTCAACCGATAATTGTTGGTCAAGAAGCAATGCTC 486
Query 481 GATAACGCATGGAATCATCTAATGGAAGATGGAGTTGGTATTATGGGAT-TGTATGGTAT 539
|| || || ||||| ||||| ||||||||||||||| |||||||||| | ||||||||||
Sbjct 487 GAGAAAGCGTGGAAACATCTCATGGAAGATGGAGTTAGTATTATGGG-TATGTATGGTAT 545
Query 540 GGGAGGTGTTGGGAAGACGACTCTTCTCACCCAGATTAACAATAAGTTCAGTAA-GTATA 598
||| ||||| |||||||| || ||| || | ||||| |||||||||||||||| | |
Sbjct 546 GGGCGGTGTAGGGAAGACAACGCTTTTCTCACAGATCCACAATAAGTTCAGTAACG-A-C 603
Query 599 TG-TGTGGCTTTGACAGCGTGATTTGGGTTGTGGTGTCTAAAGAGGTGA-ATGTAGAGAA 656
| |||| |||||| |||||||||||||||||||||||||| || | |||| |||||
Sbjct 604 CGACGTGGATTTGACTTTGTGATTTGGGTTGTGGTGTCTAAAGA-GTTACATGTGGAGAA 662
Query 657 TATTCTAGATGAAATCGCTCAGAAAGTTCATATTAGTGGAGAGAAGTGGGA-CACAAAAT 715
|||| |||||||||||||||||||||| | || |||||||| ||||| | || ||||
Sbjct 663 GATTCAAGATGAAATCGCTCAGAAAGTTGGTCTTGGTGGAGAGCAGTGGAACCA-AAAAG 721
Query 716 ATAAATACCAAAAGGGC-GTTTATTTATACAATTTCTTAAGGAAAATGAGATTTGTATTG 774
||||| | || || ||| | | ||||| ||||||||||| ||||| |||||||| |||
Sbjct 722 ATAAAAATCAGAA-GGCTGATCGTTTATTCAATTTCTTAAAGAAAAAAAGATTTGTCTTG 780
Query 775 TTTTTGGATGACATATGGGAGAAGGT-TAATTTAGTTGAGATCGGAGTCCCCTTTCCAAC 833
||||| |||||||||||||||||||| || ||| |||||||||||| || |||||
Sbjct 781 TTTTTAGATGACATATGGGAGAAGGTGGAA-TTAACTGAGATCGGAGTTCCGGATCCAA- 838
Query 834 AAT-A-AAAAACAAATGTAAAGTGGT-ATTCACCACTCGGTCCTTA-GATGTATGCACAA 889
|| | ||||| ||||||| | || ||| || |||| || || | || ||||| |
Sbjct 839 GATCACAAAAA-GGATGTAAA-TTGTCATTTACAACTC-GTTCTCAGGAAGTATGTGCGC 895
Query 890 GCATGGGGGTTGAAA-AACCAATGGAAGTCCAATGCCTGGCGGACAACGACGCATATGAT 948
||||||||||| ||| | |||||||||||| ||||| || |||| |||| ||||| ||||
Sbjct 896 GCATGGGGGTT-AAAGACCCAATGGAAGTCAAATGCTTGACGGAAAACGTCGCATTTGAT 954
Query 949 TTGTTCCaaaaaaaGGTTGGACAAATAACACTAGGA-AGCGACCCA-GAGATCCGTGAAC 1006
||||||||| ||||||||||||| |||||||| || | || ||| || |||| || |
Sbjct 955 TTGTTCCAAGAAAAGGTTGGACAGATAACACT-TGATTGTGATCCAGGA-ATCCCCGACC 1012
Query 1007 TTTCTAGAGTAGTTGCTAA-AAAATGTTGTGGTTTACCATTGGCGCTCAATGTGGTAAGT 1065
|| | ||| | |||| || |||||||||||| |||||||||| ||||| || || ||
Sbjct 1013 TTGCAAGAACAATTGC-AAGAAAATGTTGTGGCCTACCATTGGCCCTCAACGTCATAGGT 1071
Query 1066 GAGACCATGTCATGCAAGAGGACGGTACAAGAATGGCGTCATGC-GATATATGTTTTAAA 1124
|| || ||||| ||||||| ||| |||||||||||||||| || | || | ||||| ||
Sbjct 1072 GAAACAATGTCTTGCAAGAAGACAATACAAGAATGGCGTCACGCTG-TAGAAGTTTTCAA 1130
Query 1125 TTCATATGCTGCAAAGTTTTCTGGCATGGACGATAAGATCCTTCCGCTTTTAAAGTATAG 1184
|||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1131 TTCATACGCTGCAGAGTTTGATGGCATGGACGATAAGATCCTTCCGCTTTTGAAGTATAG 1190
Query 1185 CTATGATAGTCTCAAAGGGGAGGATGTCAAAAT-GTGTTTGCTATATTGCGCTTTGTTTC 1243
||| |||||||| || |||||| || || |||| ||||||||| ||||||||||| ||||
Sbjct 1191 CTACGATAGTCTTAAGGGGGAGAATATC-AAATCGTGTTTGCTGTATTGCGCTTTATTTC 1249
Query 1244 CAGAAGATGCTA-AAATAAGGAAGGAGAATCTGATAGAGTACTGGATATGCGAGGAAATT 1302
|||||||| ||| | | | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1250 CAGAAGATACTAGTATTCTGAAAGAAGAAT-TGATAGAGTACTGGATATGCGAGGAAATT 1308
Query 1303 ATAGATGGAAGTGAAGGTATTGATAAGG-CTGAGAACCAAGG-TTATGAGATAATTGGTA 1360
|||||||||||||||||||| || |||| ||||| || |||| ||||||||| || ||||
Sbjct 1309 ATAGATGGAAGTGAAGGTATAGA-AAGGGCTGAGGAC-AAGGGTTATGAGATTATCGGTA 1366
Query 1361 GTCTTGTTCG-TGCATCATTGTTGATGGAAGAGGTTGAATTGGAT-GGAGCAAA-TATTG 1417
|||||||||| | |||||||||||||||| | |||| ||| || | ||| |||| | |||
Sbjct 1367 GTCTTGTTCGCT-CATCATTGTTGATGGAGGGGGTT-AATAGGTTTGGA-CAAAGTTTTG 1423
Query 1418 TTTGTCTGCATGATGTTGTTCGTGAAATGGCTTTATGGATCGCATCTGATTTGGGAAAAC 1477
| | |||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1424 TCACTATGCATGATGTTGTTCGTGAAATGGCTTTATGGATTGCTTCTGAACTGGGAAAAC 1483
Query 1478 AAAATGAGGCGTTTATTGTGCGTGCAAGTGTTGGGCT-ACGTGAAATTCTAAAGGTTGAG 1536
|||| ||||| || |||||||||||| ||||||| || || |||||||| ||||||| ||
Sbjct 1484 AAAAAGAGGCCTTCATTGTGCGTGCAGGTGTTGG-CTTACCTGAAATTCCAAAGGTTAAG 1542
Query 1537 AATTGGAACG-TCGTGAGAAGGATGTCATTGATGAAGAATAATATT-GCTCATCTTGAT- 1593
|||||||| | | |||||||||||||| |||||| |||| || ||| | |||||| ||
Sbjct 1543 AATTGGAATGCT-GTGAGAAGGATGTCGTTGATGGAGAACAAGATTCG-TCATCTC-ATT 1599
Query 1594 GGCCGTCTTGATTGTATGGAACTCACAACTTTGCTACTACAAAGCACAC-ATTTGGAAAA 1652
||| || |||| ||||||||||||||||||||||| || ||| | | | | |||
Sbjct 1600 GGCAGTTTTGAATGTATGGAACTCACAACTTTGCTCCTGGGAAGTGGATTAATAG-AAAT 1658
Query 1653 GATCTCGAGTGAATTCTTCAACTCCATGCCAAAGCTAGCTGTTTTGGATCTATCAGGCAA 1712
||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||
Sbjct 1659 GATCTCGAGTGAATTCTTCAATTACATGCCAAAGCTAGCTGTCCTGGATCTATCACATAA 1718
Query 1713 TTATTAC-CTCTCTGAATTGCCA-AACGGAATATCAGAA-CTAGTTTCCTTGCAATATCT 1769
| | | |||| |||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct 1719 TGAA-AGGCTCTATGAATTGCCAGAA-GGAATATCA-AATCTAGTTTCCTTGCAATATCT 1775
Query 1770 CAACTTGTCAAGTA-CTGGTATACGTCATTTGCCTAAG--GG-TCTAC-AAGAGTTGAAG 1824
||||||| | || |||||| ||| | |||||| ||| || ||| | || |||||||
Sbjct 1776 CAACTTGAGAT-TAACTGGTACACGCCGTTTGCCAAAGAAGGGTCTGCGAA-AGTTGAAA 1833
Query 1825 AAACTAATTCACTTGTACTTGGAGCGA-ACAAGTC-AG-CTTG-GAAGTATGGTTGGGAT 1880
||||||||||||||| | |||||| | ||| || | |||| || |||| | ||||||
Sbjct 1834 AAACTAATTCACTTGGATTTGGAGT-ATACA--TCGAATCTTGAGA-GTATTGCTGGGAT 1889
Query 1881 ATCATGCCT-TCATAATTTGAAAGTTTTGAAATTA--TC-TGGTTCTAG-TTATGC-ATG 1934
|||| | || | ||||||||||||||||||||||| | | |||| | || | | |||
Sbjct 1890 ATCAAGTCTGT-ATAATTTGAAAGTTTTGAAATTACGTAATAATTCTTGGTT-T-CTATG 1946
Query 1935 GGATCTCGACACAGTGAAGGAGTTGGAA-GCCTTGGAACACTTGGAAGTTTTAACCACAA 1993
|||||||||||||||||||||||||||| | |||||||| || ||| |||||||| |||
Sbjct 1947 GGATCTCGACACAGTGAAGGAGTTGGAAAGT-TTGGAACATTTAGAAATTTTAACCGCAA 2005
Query 1994 CTATCGATGACTGTACTCTAGGTACGGATCAATTCTTGAGCTCTCATAGGTTGATGAGTT 2053
||||| || | | ||||| ||| | ||| |||||||||||||||||||||||||
Sbjct 2006 CTATCAAT--C---A----AGGTATGGAGCCATTTTTGAGCTCTCATAGGTTGATGAGTT 2056
Query 2054 G--CA---T-----ACGGTTTCT--AAAG-AT--ATCG--A---ATAA-TAGTAAT-AG- 2090
| || | ||| | ||| ||| || ||| | |||| || | || |
Sbjct 2057 GTTCACGATTTCTTACGATCTCTGGAAAATATTTATCATCACCGATAAATATTCATCATC 2116
Query 2091 A-A-ATA--GG-AACTCATCTAGAATATCACTTCCAGTAACTATGGACAGGCTTCAAG-- 2143
| | || || || |||| | ||||||||||| ||| ||||||||||| |||| | |
Sbjct 2117 ACAGATGTCGGGAA-TCATTTGGAATATCACTTTCAGGAACTATGGACAAGCTT-A-GCC 2173
Query 2144 AATTTACCATTGA-GCATTGCC-ATACCTCTGAGATAAAGATGGGAAGGATATGCAGCTT 2201
|||| | ||||| | | ||| | | |||||||||||||||||||||||||||||||||
Sbjct 2174 AATTCAGAATTGAAG-ACTGCGGA-ATCTCTGAGATAAAGATGGGAAGGATATGCAGCTT 2231
Query 2202 CTCCAGCCTCATCGAAGTGAATCTAAGCA-ATTGTAGACGCC-TGAGGGAATTGACATTT 2259
|| ||||| |||||||| | ||| | ||||| || ||| ||||||||||||| |||
Sbjct 2232 CTTGAGCCTTGTCGAAGTGTTTATAAA-AGATTGT-GAAGCCCTGAGGGAATTGACGTTT 2289
Query 2260 CTGATGTTCGCTCCAAATCTTA-AACGGCTTCATGTTGTCTCTT-CAAATC-AACTAGAA 2316
|||||||| ||||||||||||| || ||| ||||| || |||| | ||||||||
Sbjct 2290 CTGATGTTTGCTCCAAATCTTAGAAAA-CTTTATGTT-TCAGGGGCAAA-CGAACTAGAA 2346
Query 2317 GATATAATAAACAAAGAGAAAGCTCATGATGGTGAAAAAT--CAGGGATTGTTCCTTTCC 2374
|||||||||||||||||||||||| || ||| | |||| |||||||||||||||| |
Sbjct 2347 GATATAATAAACAAAGAGAAAGCTTGCGA-GGT-ACAAATTTCAGGGATTGTTCCTTTTC 2404
Query 2375 CAAAGCTGAATGAACTTCACTT-ATATAATCTACGGGAG-CTGAAGAATATCTATTGGAG 2432
||||||||| |||||| | || || | | ||| ||| | ||||||||||||||||||||
Sbjct 2405 AAAAGCTGAAAGAACTT-ATTTTATTTCAGCTA-GGGTGGCTGAAGAATATCTATTGGAG 2462
Query 2433 TCCTCTACCATTTCCATGTCTAGAGAAAATCAATGTAATGGGCTGTCCAAATCTGAAAAA 2492
||||||||| |||||||||||| ||| |||| |||| | |||| |||||||| |||
Sbjct 2463 TCCTCTACCCTTTCCATGTCTACAGACTGTCAAAGTAAAAAGATGTCAAAATCTGAGAAA 2522
Query 2493 GCTTCCACTCGATTCTAAAAGTGGAAAGCATGGTGGA-AATGGACTCATCATAACACACC 2551
|||||||||| |||| |||||||| ||||| |||| | ||||||||| |||||||| ||
Sbjct 2523 GCTTCCACTCAATTCCAAAAGTGGCAAGCAGGGTG-ATAATGGACTCGTCATAACATAC- 2580
Query 2552 G-TGAGATG-GAATGGATT 2568
| ||||| | || ||||||
Sbjct 2581 GATGAGACGAGA-TGGATT 2598
> Ahg907240 jgi|Araly1|907240|Al_scaffold_0002_321
Length=3522
Score = 1288 bits (697), Expect = 0.0
Identities = 1307/1591 (82%), Gaps = 84/1591 (5%)
Strand=Plus/Plus
Query 456 AATTGTTGGTCAAGAAACAATGCTTGATAACGCATGGAATCATCTAATGGAAGATGGAGT 515
||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 1080 AATTGTTGGTCAAGAGACAATGCTAGATAACGCATGGAAACATCTGATTGAAGATGGAGC 1139
Query 516 TGGTATTATGGGAT-TGTATGGTATGGGAGGTGTTGGGAAGACGACTCTTCTCACCCAGA 574
|||||||||||| | |||| |||||||| || || |||||||| ||| ||||||||||||
Sbjct 1140 TGGTATTATGGG-TATGTACGGTATGGGCGGAGTAGGGAAGACAACTATTCTCACCCAGA 1198
Query 575 TTAACAATAAGTTCAGTAAGT-ATATGTGTGGCTTTGACAGCGTGATTTGGGTTGTGGTG 633
| || |||||||||||||| | ||| |||||| |||||| ||||||||||||||||||
Sbjct 1199 TCAATAATAAGTTCAGTAA-TGATAGGTGTGGATTTGACTTTGTGATTTGGGTTGTGGTG 1257
Query 634 TCTAAAGAGGTGAATGTAGAGAATATTCTAGATGAAATCGCTCAGAAAGTTCATATTAGT 693
||||||||| || || |||||||||||| ||||||||| ||| |||||||| | || ||
Sbjct 1258 TCTAAAGAGCTGCATATAGAGAATATTCAAGATGAAATTGCTGAGAAAGTTGGTCTTGGT 1317
Query 694 GGAG-AGAAGTGGGACACAAAATATAAATAC-CAAAAGGGCGTTTATTTATACAATTTCT 751
|||| || ||||| ||| |||| || || || ||||||||| || |||||||||||||||
Sbjct 1318 GGAGAAG-AGTGGAACAAAAAAGATGAA-ACTCAAAAGGGCCTTCATTTATACAATTTCT 1375
Query 752 TAAGGA-AAATGAGATTTGTATTGTTTTTGGATGACATATGGGAGAAGGT-TAATTTAGT 809
|||||| ||| |||||| | |||||||| ||||| |||||||||| ||| || ||||
Sbjct 1376 TAAGGACAAA-GAGATTCATGTTGTTTTTAGATGATATATGGGAGACGGTGGAA-TTAGA 1433
Query 810 TGAGATCGGAGTCCCCTTTCCAACAAT-A-AAAAACAAATGTAAAGTGGTATTCACCACT 867
| |||| ||| |||| |||||| || | | ||| ||| | | ||| ||||||||||
Sbjct 1434 TAAGATTGGAATCCCGGATCCAAC-ATCACACAAA-GGATGCAGATTGGCATTCACCACT 1491
Query 868 CGGTCCT-TAGATGTATGCACAAGCATGGGGGTTGAAAAACCAATGGAAGTCCAATGCCT 926
|||| || || |||||||||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 1492 CGGT-CTCTAAATGTATGCACGAGCATGGGGGTTGGAAAACCAATGGAAGTCCAATGTTT 1550
Query 927 GGCGGACAACGACGCATATGATTTGTTCCaaaaaaaGGTTGGACAAATAACACTAGGAAG 986
||||||| | ||||||| |||||||||| |||||||||||||| || ||||||| | |||
Sbjct 1551 GGCGGACGATGACGCATTTGATTTGTTCAAAAAAAAGGTTGGAGAATTAACACTCGAAAG 1610
Query 987 CGACCCAGAGATCCGTGAACTTTCTAGAGTAGTTGCTAAAAAATGTTGTGGTTTACCATT 1046
||| ||| |||||| || ||| | | | |||||||||||||||||||||||||||||||
Sbjct 1611 CGATCCACAGATCCCAGACCTTGCAAAAATAGTTGCTAAAAAATGTTGTGGTTTACCATT 1670
Query 1047 GGCGCTCAATGTGGTAAGTGAGACCATGTCATGCAAGAGGACGGTACAAGAATGGCGTCA 1106
||| ||||| || || |||| |||||||||| |||||||||| ||||||||||||| |
Sbjct 1671 GGCTCTCAACGTAATAGGTGAAACCATGTCATCCAAGAGGACGATACAAGAATGGCGACG 1730
Query 1107 TGCGATAT-ATGTTTTAAATTCATATGCTGCAAAGTTTTCTGGCATGGACGATAAGATCC 1165
|||||||| | ||||| | ||||||||| ||| ||||||| |||||| | ||||||||||
Sbjct 1731 TGCGATATCA-GTTTTGACTTCATATGCCGCAGAGTTTTCAGGCATGAATGATAAGATCC 1789
Query 1166 TTCCGCTTTTAAAGTATAGCTATGATAGTCTCAAAGGGGAGGATGTCAAAATGTGTTTGC 1225
|||||||||| ||||||||||| |||||||| |||||||| |||||||| | |||||||
Sbjct 1790 TTCCGCTTTTGAAGTATAGCTACGATAGTCTTAAAGGGGACCATGTCAAATTTTGTTTGC 1849
Query 1226 TATATTGCGCTTTGTTTCCAGAAGATGCTAAAATAAGGA-AGGAGAATCTGATAGAGTAC 1284
|||| |||||||| | ||| |||||||||||||| | || ||| | ||||||| |||
Sbjct 1850 TATACTGCGCTTTATATCCGGAAGATGCTAAAATTCCCATAGAAGATT-TGATAGACTAC 1908
Query 1285 TGGATATGCGA-GGAAATTATAGATGGAAGTGAAGGTATTGATA-AGGCTGAGAACCAAG 1342
||||||||||| |||| |||||||| || ||||| || ||| || |||||||| | | |
Sbjct 1909 TGGATATGCGAAGGAA-TTATAGATAGAGGTGAAAGTGTTG-TAGAGGCTGAGTAT-ATG 1965
Query 1343 -GTTATGAGATAATTGGTAGTCTTGT-TCGTGCATCATTGTTGATGGAAGAGG-TTGAAT 1399
||||||||||||||||||||||||| | ||||||||||||||||| ||| || |||| |
Sbjct 1966 AGTTATGAGATAATTGGTAGTCTTGTGT-GTGCATCATTGTTGATG-AAGGGGGTTGA-T 2022
Query 1400 T-GGATGGAGCAA-ATATTGTTTGTCTGCATGATGTTG-TTCGTGAAATGGCTTTATGGA 1456
||||||| || || |||| ||| ||||||| || | ||||||||||||| || ||||
Sbjct 2023 CAGGATGGAA-AAGATTTTGTGTGTATGCATGACGT-GATTCGTGAAATGGCCTTGTGGA 2080
Query 1457 TCGCATCTGATTTGGGAAAACAAAATGAGGCGTTTATTGTGCGTGCAAGTGTTGGGCTAC 1516
|||||||||||||||||| | |||| || | ||||||||||||||| ||||||||||||
Sbjct 2081 TCGCATCTGATTTGGGAAGAGAAAAGGATGTTTTTATTGTGCGTGCAGGTGTTGGGCTAC 2140
Query 1517 GTGAAATTCTAAAGGTT-GAGAATTGGAACGTCGTGAGAA-GGATGTCATTGATGAA--- 1571
||||||||| || |||| | || ||||||| | || |||| ||||||||||||||||
Sbjct 2141 GTGAAATTCCAAGGGTTAGGGA-TTGGAACATTGT-AGAAAGGATGTCATTGATGAAACT 2198
Query 1572 GA--A-TAATATT-GCT--CATCTTGA-TGGC-CGTCTTGATTGTATGGAACTCACAACT 1623
|| | ||| | | | ||| || | |||| | || ||| |||||| |||||||||||
Sbjct 2199 GAGGAATAACAAGAGGTTTCATGTT-ACTGGCAC-TCCTGAATGTATGAAACTCACAACT 2256
Query 1624 TTGCTACTACAAAGCACAC-A-TTTGGAAAAG-ATCTCGAGTGAATTCTTCAACTCCATG 1680
||||| || ||| || | | ||||| || | |||||||||||||||||||| | ||||
Sbjct 2257 TTGCTCCTGCAA--CATTCGAATTTGGGAA-GTATCTCGAGTGAATTCTTCAAGTACATG 2313
Query 1681 CCAAAGCTAGCTGTTTTGGATCTATCAGGCAATTATTACC-TCTCTG--AATTGCCAAAC 1737
||||| || ||||| ||||||||||| | ||| || || ||| || |||||||
Sbjct 2314 CCAAATCTTGCTGTGTTGGATCTATC-G--AATAATGACAGTCTTTGTGAATTGCC---- 2366
Query 1738 GGAA-TATCAGAACTAGTTTCCTTGCAATATCTCAACTTGTCAAGTACTGGTATACGTC- 1795
||| |||||| | |||||||| ||||||||||||||||||||| |||| | |||| ||
Sbjct 2367 GGATCTATCAGGATTAGTTTCCCTGCAATATCTCAACTTGTCAAATACTAGCATAC-TCC 2425
Query 1796 ATTTGCCTAAGGGTCTACAAGAGTTGAAGAAACTAATTCACTTGTACTTGGAGCGAACAA 1855
| |||||||||||| ||||| ||||||||||||||||| ||||| | |||||| ||||
Sbjct 2426 AATTGCCTAAGGGTGTACAAAAGTTGAAGAAACTAATTTACTTGGATTTGGAGAAAACAT 2485
Query 1856 --GTCAGCTTGGAAGTA-TGGTTGGGATATCATGCCTTCATAATTTGAAAGTTTTGAAAT 1912
|| | |||| ||| | | ||||||||| | || |||||||||||||||||||| |
Sbjct 2486 TTGTTAT-TTGGG-GTAGTACT-GGGATATCAAGTCTGCATAATTTGAAAGTTTTGAAGT 2542
Query 1913 TATCTGGTTCT-AGTTATGCATGGGATCTCGACA-CAGTGAAGGAGTTGGAAGCCTTGGA 1970
||| ||||||| | || | || ||| | | ||| |||||||||| ||||||||||||||
Sbjct 2543 TATTTGGTTCTCATTTTT--ATTGGAACACCACATCAGTGAAGGAATTGGAAGCCTTGGA 2600
Query 1971 ACACTTGGAAGTTTTAACCACAACTATCGAT 2001
||| |||||||||||||||| ||| || |||
Sbjct 2601 ACATTTGGAAGTTTTAACCATAACAATTGAT 2631
Score = 324 bits (175), Expect = 2e-87
Identities = 384/481 (80%), Gaps = 30/481 (6%)
Strand=Plus/Plus
Query 2023 CAATTCTTGAGCTCTCATAGGTTGATGAGTTGCATACGGTTTCTAAAG-ATATCGAATAA 2081
||||| || | ||| ||||||||||||||||| | || |||| ||| || |||||||
Sbjct 2728 CAATTTTTAACCTCACATAGGTTGATGAGTTGTACACAAATTCT-AAGAATCTCGAATAC 2786
Query 2082 TAGTAATAGAAATAGGAACTCATCTAGAATATCACTTCCAGTAACTATGGACAGGCTTCA 2141
| | | | | |||| |||||| ||||||||||||||| ||||||||||| |||||
Sbjct 2787 CA-T--CA-ATCT-GGAA-TCATCTGGAATATCACTTCCAGCAACTATGGACAAGCTTCG 2840
Query 2142 AGAA-TTTACCA--TTGAGCA-TTGCCATACCTCTGAGATAAAGATGGGAAGGATATGCA 2197
||| | || || || || | |||| ||| |||||||||||||||||||||||||||||
Sbjct 2841 TGAACTCTA-CATTTTTAGGAGTTGCAATATCTCTGAGATAAAGATGGGAAGGATATGCA 2899
Query 2198 GCTTCTCCAGCCTCATCGAAGTGAATCTA-AGC-A-ATTGTAGACGCCTGAGGGAATTGA 2254
|||||| |||||| || ||||| | || | | | |||||| | |||||||||||||||
Sbjct 2900 GCTTCTTGAGCCTCGTCAAAGTG-CT-TATA-CAAGATTGTAAAGGCCTGAGGGAATTGA 2956
Query 2255 CATTTCTGATGTTCGCTCCAAATCTTAAACGGCT-TCATGTTGTCTCTT-CAAATCAACT 2312
||||||||||||||||||||||||||||| | | |||||| | | |||| | ||
Sbjct 2957 CATTTCTGATGTTCGCTCCAAATCTTAAATTTTTGT-ATGTTGA-TGATGCAAAAGACCT 3014
Query 2313 AGAAGATATAATAAACAAAGAGAAAGCTCATGATGGTGAAAAATCAGGGATTGTTCCTTT 2372
|||||||||||||||||||||||||||| ||| | ||||| | ||| |||||||||||
Sbjct 3015 AGAAGATATAATAAACAAAGAGAAAGCTTGTGAAGTTGAAAT-T-AGG-ATTGTTCCTTT 3071
Query 2373 CCCAAAGCTGAATGAA-CTTCACTTATATAATCTACGGGAGCTGAAGAATATCTATTGGA 2431
| |||||||| | || ||||| || | |||||| | ||||| ||||||| || ||||
Sbjct 3072 TCAAAAGCTGACT-AATCTTCATTTGGAGCATCTACCGAAGCTGGAGAATATATACTGGA 3130
Query 2432 GTCCTCTA-CCATTTCCATGTCTAGAGAAAATCAATGTAATGGGCTGTCCAAATCTGAAA 2490
|||||||| || |||||||||||| |||||||| ||||| | | |||||||| ||||||
Sbjct 3131 GTCCTCTATCC-TTTCCATGTCTAAAGAAAATCGATGTATTCGAATGTCCAAACCTGAAA 3189
Query 2491 A 2491
|
Sbjct 3190 A 3190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101739044395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5